Wall clock time and date at job start Tue Mar 31 2020 22:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.47078 * 2 1 4 4 C 1.36943 * 120.00048 * 96.94414 * 3 2 1 5 5 H 1.07996 * 120.00356 * 159.78484 * 4 3 2 6 6 C 1.38818 * 119.99557 * 339.78344 * 4 3 2 7 7 N 1.31615 * 120.00147 * 356.17311 * 6 4 3 8 8 Si 1.86802 * 119.99638 * 176.17032 * 6 4 3 9 9 H 1.48495 * 109.46872 * 90.00029 * 8 6 4 10 10 H 1.48503 * 109.46996 * 209.99878 * 8 6 4 11 11 H 1.48498 * 109.46990 * 329.99934 * 8 6 4 12 12 C 1.46496 * 120.00127 * 276.93848 * 3 2 1 13 13 C 1.50700 * 109.46945 * 275.36509 * 12 3 2 14 14 N 1.30755 * 126.36270 * 92.24677 * 13 12 3 15 15 N 1.28432 * 110.64142 * 180.28954 * 14 13 12 16 16 N 1.28950 * 110.19710 * 359.74488 * 15 14 13 17 17 N 1.35047 * 126.36366 * 272.11046 * 13 12 3 18 18 C 1.40340 * 127.38266 * 359.97438 * 17 13 12 19 19 C 1.38825 * 120.01102 * 134.72864 * 18 17 13 20 20 C 1.38063 * 119.99374 * 180.02562 * 19 18 17 21 21 C 1.38750 * 120.00520 * 0.26063 * 20 19 18 22 22 O 1.35933 * 119.98554 * 179.73982 * 21 20 19 23 23 C 1.42900 * 116.99784 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.47248 * 300.00489 * 23 22 21 25 25 F 1.39901 * 109.47016 * 60.00321 * 23 22 21 26 26 C 1.38747 * 120.02092 * 359.48321 * 21 20 19 27 27 C 1.38065 * 120.00724 * 0.51424 * 26 21 20 28 28 H 1.08995 * 109.47130 * 188.30356 * 1 2 3 29 29 H 1.08998 * 109.47003 * 308.30714 * 1 2 3 30 30 H 1.09001 * 109.46953 * 68.30447 * 1 2 3 31 31 H 1.09003 * 109.46729 * 239.99603 * 2 1 3 32 32 H 1.09000 * 109.46804 * 120.00180 * 2 1 3 33 33 H 0.97004 * 119.99741 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47232 * 155.36672 * 12 3 2 35 35 H 1.09000 * 109.46971 * 35.36313 * 12 3 2 36 36 H 1.07999 * 120.00322 * 0.02562 * 19 18 17 37 37 H 1.07998 * 119.99462 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47044 * 180.02562 * 23 22 21 39 39 H 1.07994 * 119.99515 * 180.25398 * 26 21 20 40 40 H 1.07998 * 120.00303 * 179.76409 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3818 1.9790 1.1773 5 1 3.0309 2.8420 1.1668 6 6 1.9158 1.4755 2.3841 7 7 1.0653 0.4711 2.3936 8 14 2.4959 2.2235 3.9944 9 1 1.5814 3.3260 4.3859 10 1 2.4964 1.1815 5.0525 11 1 3.8712 2.7576 3.8251 12 6 2.1181 2.1229 -1.2594 13 6 3.4302 1.8033 -1.9280 14 7 3.6414 0.8626 -2.8112 15 7 4.8725 0.8531 -3.1770 16 7 5.5262 1.7804 -2.5642 17 7 4.6059 2.4371 -1.7283 18 6 4.8566 3.5162 -0.8667 19 6 5.9795 3.5066 -0.0504 20 6 6.2254 4.5682 0.7974 21 6 5.3477 5.6420 0.8375 22 8 5.5874 6.6845 1.6762 23 6 4.6426 7.7565 1.6652 24 9 4.5823 8.3119 0.3826 25 9 3.3806 7.2694 2.0222 26 6 4.2281 5.6544 0.0180 27 6 3.9815 4.5933 -0.8302 28 1 -0.3633 -1.0168 0.1484 29 1 -0.3633 0.6370 0.8064 30 1 -0.3633 0.3799 -0.9549 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.7394 0.1196 3.2369 34 1 2.0647 3.1925 -1.0564 35 1 1.2965 1.8363 -1.9158 36 1 6.6605 2.6689 -0.0786 37 1 7.0987 4.5606 1.4327 38 1 4.9522 8.5210 2.3777 39 1 3.5474 6.4923 0.0466 40 1 3.1080 4.6013 -1.4653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121068461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:40 Heat of formation + Delta-G solvation = 40.666216 kcal Electronic energy + Delta-G solvation = -30431.444824 eV Core-core repulsion = 25921.670599 eV Total energy + Delta-G solvation = -4509.774225 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.58786 -47.56966 -42.61072 -40.18364 -37.99020 -36.35398 -34.30188 -32.55647 -31.31966 -30.94748 -29.69036 -29.33459 -26.75767 -26.29425 -23.99185 -23.73580 -23.07852 -21.84752 -21.37006 -20.17536 -19.28839 -18.51597 -18.14382 -17.92524 -16.97653 -16.41879 -16.09678 -15.23955 -14.91907 -14.85613 -14.61110 -14.45301 -14.18980 -14.05829 -13.88440 -13.66083 -13.60290 -13.51857 -13.25416 -13.09926 -12.45487 -12.27309 -12.15302 -11.86839 -11.59575 -11.51958 -11.23070 -11.01908 -10.88627 -10.63034 -10.55512 -10.41022 -10.18508 -9.93446 -9.66391 -9.52353 -9.20829 -8.58146 -8.35525 -7.09144 -5.88863 -3.42804 0.73742 1.13077 1.67764 2.18779 2.33094 2.81614 3.20970 3.26091 3.33387 3.33876 3.44383 4.01156 4.31194 4.37470 4.53778 4.56188 4.62134 4.90392 4.95554 5.14597 5.25743 5.35433 5.36758 5.49181 5.67742 5.82508 5.93466 5.97608 6.11368 6.17211 6.25894 6.27746 6.56941 6.67299 6.91421 6.99764 7.04271 7.09307 7.50775 7.71255 8.00693 8.23307 8.96490 9.04391 9.58448 10.03423 11.08858 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009347 B = 0.005565 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.032233 B = 5030.183352 C = 6952.334521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.161 3.839 3 N -0.570 5.570 4 C -0.264 4.264 5 H 0.072 0.928 6 C 0.010 3.990 7 N -0.894 5.894 8 Si 0.905 3.095 9 H -0.284 1.284 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.206 3.794 13 C 0.261 3.739 14 N -0.342 5.342 15 N -0.047 5.047 16 N -0.107 5.107 17 N -0.331 5.331 18 C 0.127 3.873 19 C -0.059 4.059 20 C -0.117 4.117 21 C 0.112 3.888 22 O -0.318 6.318 23 C 0.410 3.590 24 F -0.199 7.199 25 F -0.193 7.193 26 C -0.169 4.169 27 C -0.065 4.065 28 H 0.026 0.974 29 H 0.083 0.917 30 H 0.007 0.993 31 H 0.009 0.991 32 H 0.096 0.904 33 H 0.255 0.745 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.182 0.818 39 H 0.144 0.856 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.088 14.529 -0.904 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.037 3.963 3 N -0.289 5.289 4 C -0.392 4.392 5 H 0.090 0.910 6 C -0.188 4.188 7 N -0.538 5.538 8 Si 0.735 3.265 9 H -0.211 1.211 10 H -0.214 1.214 11 H -0.204 1.204 12 C 0.071 3.929 13 C -0.019 4.019 14 N -0.193 5.193 15 N -0.042 5.042 16 N -0.092 5.092 17 N -0.122 5.122 18 C 0.036 3.964 19 C -0.079 4.079 20 C -0.136 4.136 21 C 0.069 3.931 22 O -0.236 6.236 23 C 0.320 3.680 24 F -0.181 7.181 25 F -0.174 7.174 26 C -0.188 4.188 27 C -0.086 4.086 28 H 0.045 0.955 29 H 0.102 0.898 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.198 0.802 39 H 0.162 0.838 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.900 13.626 -1.521 15.349 hybrid contribution -0.291 0.854 1.433 1.694 sum 6.609 14.481 -0.088 15.918 Atomic orbital electron populations 1.22162 0.98507 0.99759 0.99076 1.20947 0.92895 0.83450 0.98995 1.44205 1.73307 1.11229 1.00137 1.19271 1.24631 1.11949 0.83393 0.90992 1.24963 0.97445 0.98317 0.98107 1.70140 1.32536 1.26234 1.24928 0.86239 0.78594 0.78438 0.83278 1.21067 1.21430 1.20362 1.19743 0.86171 0.97681 0.89272 1.28808 0.92910 0.88563 0.91661 1.74456 1.09142 1.20483 1.15263 1.77901 0.99248 1.11262 1.15808 1.82489 1.14158 1.06893 1.05648 1.48861 1.08055 1.24719 1.30610 1.17256 0.98421 0.86851 0.93919 1.20813 0.96178 0.98181 0.92774 1.20239 1.00467 0.91639 1.01291 1.18876 0.95245 0.87981 0.91033 1.86622 1.48698 1.28448 1.59822 1.23379 0.75849 0.86242 0.82544 1.93099 1.95967 1.85433 1.43611 1.93152 1.43704 1.89018 1.91570 1.21308 0.97926 1.00950 0.98614 1.20805 0.98488 0.90732 0.98571 0.95496 0.89793 0.97365 0.97272 0.88613 0.93456 0.90037 0.89587 0.83986 0.83761 0.80163 0.83836 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.47 37.16 0.35 -2.66 16 2 C 0.16 3.80 5.60 -4.04 -0.02 3.78 16 3 N -0.57 -13.10 2.52 -174.61 -0.44 -13.54 16 4 C -0.26 -6.50 9.70 -15.05 -0.15 -6.65 16 5 H 0.07 1.74 7.12 -52.49 -0.37 1.37 16 6 C 0.01 0.26 5.26 -17.43 -0.09 0.17 16 7 N -0.89 -23.46 7.99 55.49 0.44 -23.02 16 8 Si 0.91 20.57 29.56 -169.99 -5.02 15.55 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.21 3.96 5.95 -5.20 -0.03 3.93 16 13 C 0.26 5.16 7.55 -155.20 -1.17 3.99 16 14 N -0.34 -7.22 12.16 32.75 0.40 -6.82 16 15 N -0.05 -0.99 13.39 60.35 0.81 -0.18 16 16 N -0.11 -2.11 13.85 60.35 0.84 -1.28 16 17 N -0.33 -6.23 3.73 -7.95 -0.03 -6.26 16 18 C 0.13 2.12 5.87 -83.52 -0.49 1.63 16 19 C -0.06 -0.89 9.91 -39.43 -0.39 -1.29 16 20 C -0.12 -1.55 9.98 -39.46 -0.39 -1.94 16 21 C 0.11 1.50 6.48 -39.20 -0.25 1.25 16 22 O -0.32 -3.56 10.43 -19.53 -0.20 -3.77 16 23 C 0.41 3.44 5.98 101.05 0.60 4.05 16 24 F -0.20 -1.88 15.56 2.25 0.04 -1.84 16 25 F -0.19 -2.17 15.59 2.25 0.04 -2.14 16 26 C -0.17 -2.29 8.25 -39.46 -0.33 -2.62 16 27 C -0.07 -0.96 8.23 -39.43 -0.32 -1.29 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 2.07 6.46 -51.93 -0.34 1.73 16 30 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 32 H 0.10 2.54 5.96 -51.93 -0.31 2.23 16 33 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.08 1.42 5.16 -51.93 -0.27 1.15 16 35 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 36 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.18 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.14 1.76 5.09 -52.49 -0.27 1.49 16 40 H 0.14 1.87 6.49 -52.49 -0.34 1.53 16 LS Contribution 345.65 15.07 5.21 5.21 Total: -1.00 -29.93 345.65 -4.60 -34.53 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -3.99 Total: 1.22 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -2.69 Total: 2.34 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 2.02 Total: -51.10 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -0.20 Total: -3.77 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.07 Total: -3.98 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.93 -4.60 -34.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121068461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.196 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds