Wall clock time and date at job start Tue Mar 31 2020 22:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.47078 * 2 1 4 4 C 1.36943 * 120.00048 * 96.94414 * 3 2 1 5 5 H 1.07996 * 120.00356 * 159.78484 * 4 3 2 6 6 C 1.38818 * 119.99557 * 339.78344 * 4 3 2 7 7 N 1.31615 * 120.00147 * 356.17311 * 6 4 3 8 8 Si 1.86802 * 119.99638 * 176.17032 * 6 4 3 9 9 H 1.48495 * 109.46872 * 90.00029 * 8 6 4 10 10 H 1.48503 * 109.46996 * 209.99878 * 8 6 4 11 11 H 1.48498 * 109.46990 * 329.99934 * 8 6 4 12 12 C 1.46496 * 120.00127 * 276.93848 * 3 2 1 13 13 C 1.50700 * 109.46945 * 275.36509 * 12 3 2 14 14 N 1.30755 * 126.36270 * 92.24677 * 13 12 3 15 15 N 1.28432 * 110.64142 * 180.28954 * 14 13 12 16 16 N 1.28950 * 110.19710 * 359.74488 * 15 14 13 17 17 N 1.35047 * 126.36366 * 272.11046 * 13 12 3 18 18 C 1.40340 * 127.38266 * 359.97438 * 17 13 12 19 19 C 1.38825 * 120.01102 * 134.72864 * 18 17 13 20 20 C 1.38063 * 119.99374 * 180.02562 * 19 18 17 21 21 C 1.38750 * 120.00520 * 0.26063 * 20 19 18 22 22 O 1.35933 * 119.98554 * 179.73982 * 21 20 19 23 23 C 1.42900 * 116.99784 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.47248 * 300.00489 * 23 22 21 25 25 F 1.39901 * 109.47016 * 60.00321 * 23 22 21 26 26 C 1.38747 * 120.02092 * 359.48321 * 21 20 19 27 27 C 1.38065 * 120.00724 * 0.51424 * 26 21 20 28 28 H 1.08995 * 109.47130 * 188.30356 * 1 2 3 29 29 H 1.08998 * 109.47003 * 308.30714 * 1 2 3 30 30 H 1.09001 * 109.46953 * 68.30447 * 1 2 3 31 31 H 1.09003 * 109.46729 * 239.99603 * 2 1 3 32 32 H 1.09000 * 109.46804 * 120.00180 * 2 1 3 33 33 H 0.97004 * 119.99741 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47232 * 155.36672 * 12 3 2 35 35 H 1.09000 * 109.46971 * 35.36313 * 12 3 2 36 36 H 1.07999 * 120.00322 * 0.02562 * 19 18 17 37 37 H 1.07998 * 119.99462 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47044 * 180.02562 * 23 22 21 39 39 H 1.07994 * 119.99515 * 180.25398 * 26 21 20 40 40 H 1.07998 * 120.00303 * 179.76409 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3818 1.9790 1.1773 5 1 3.0309 2.8420 1.1668 6 6 1.9158 1.4755 2.3841 7 7 1.0653 0.4711 2.3936 8 14 2.4959 2.2235 3.9944 9 1 1.5814 3.3260 4.3859 10 1 2.4964 1.1815 5.0525 11 1 3.8712 2.7576 3.8251 12 6 2.1181 2.1229 -1.2594 13 6 3.4302 1.8033 -1.9280 14 7 3.6414 0.8626 -2.8112 15 7 4.8725 0.8531 -3.1770 16 7 5.5262 1.7804 -2.5642 17 7 4.6059 2.4371 -1.7283 18 6 4.8566 3.5162 -0.8667 19 6 5.9795 3.5066 -0.0504 20 6 6.2254 4.5682 0.7974 21 6 5.3477 5.6420 0.8375 22 8 5.5874 6.6845 1.6762 23 6 4.6426 7.7565 1.6652 24 9 4.5823 8.3119 0.3826 25 9 3.3806 7.2694 2.0222 26 6 4.2281 5.6544 0.0180 27 6 3.9815 4.5933 -0.8302 28 1 -0.3633 -1.0168 0.1484 29 1 -0.3633 0.6370 0.8064 30 1 -0.3633 0.3799 -0.9549 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.7394 0.1196 3.2369 34 1 2.0647 3.1925 -1.0564 35 1 1.2965 1.8363 -1.9158 36 1 6.6605 2.6689 -0.0786 37 1 7.0987 4.5606 1.4327 38 1 4.9522 8.5210 2.3777 39 1 3.5474 6.4923 0.0466 40 1 3.1080 4.6013 -1.4653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121068461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:39 Heat of formation + Delta-G solvation = 23.827822 kcal Electronic energy + Delta-G solvation = -30432.174991 eV Core-core repulsion = 25921.670599 eV Total energy + Delta-G solvation = -4510.504393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.31169 -48.30592 -44.15338 -41.21458 -39.05504 -38.08646 -35.67969 -34.21125 -32.78722 -32.37522 -31.26748 -30.71119 -28.34520 -27.23549 -25.55774 -25.13929 -24.39231 -23.11617 -22.95596 -21.84569 -20.18072 -19.58090 -19.00356 -18.87906 -18.77825 -17.77734 -17.21240 -16.95214 -16.24241 -16.02428 -15.75847 -15.62404 -15.51123 -15.41192 -15.00201 -14.88684 -14.69375 -14.61488 -14.55834 -14.10361 -13.95641 -13.75778 -13.43672 -13.34866 -13.17217 -12.95494 -12.79521 -12.64642 -12.45827 -12.33946 -12.08012 -11.96833 -11.88294 -11.64147 -11.47473 -11.21387 -10.46816 -10.31135 -9.50696 -8.93915 -7.79442 -5.34078 -0.55183 0.03841 0.29608 0.80914 1.22009 1.46526 1.49001 1.52135 1.54901 2.31580 2.48185 2.55211 3.02459 3.34126 3.37059 3.48960 3.59350 3.60449 3.67901 3.69491 3.80057 3.97269 4.20185 4.25579 4.36847 4.49965 4.57896 4.67672 4.72679 4.75672 4.89636 5.09170 5.11038 5.15750 5.24879 5.28049 5.48587 5.59309 5.80045 5.83466 6.16168 6.33720 7.13908 7.39591 7.74488 8.17415 9.17229 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009347 B = 0.005565 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.032233 B = 5030.183352 C = 6952.334521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.168 3.832 3 N -0.583 5.583 4 C -0.259 4.259 5 H 0.077 0.923 6 C -0.037 4.037 7 N -0.915 5.915 8 Si 0.955 3.045 9 H -0.283 1.283 10 H -0.298 1.298 11 H -0.273 1.273 12 C 0.209 3.791 13 C 0.255 3.745 14 N -0.357 5.357 15 N -0.063 5.063 16 N -0.107 5.107 17 N -0.320 5.320 18 C 0.091 3.909 19 C -0.067 4.067 20 C -0.117 4.117 21 C 0.116 3.884 22 O -0.319 6.319 23 C 0.403 3.597 24 F -0.206 7.206 25 F -0.210 7.210 26 C -0.172 4.172 27 C -0.067 4.067 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.026 0.974 31 H 0.009 0.991 32 H 0.064 0.936 33 H 0.247 0.753 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.142 0.858 37 H 0.171 0.829 38 H 0.240 0.760 39 H 0.157 0.843 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.684 16.827 -0.349 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.044 3.956 3 N -0.302 5.302 4 C -0.388 4.388 5 H 0.094 0.906 6 C -0.233 4.233 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.198 1.198 12 C 0.077 3.923 13 C -0.025 4.025 14 N -0.209 5.209 15 N -0.058 5.058 16 N -0.093 5.093 17 N -0.111 5.111 18 C 0.000 4.000 19 C -0.087 4.087 20 C -0.136 4.136 21 C 0.072 3.928 22 O -0.236 6.236 23 C 0.314 3.686 24 F -0.187 7.187 25 F -0.192 7.192 26 C -0.192 4.192 27 C -0.088 4.088 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.027 0.973 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.160 0.840 37 H 0.189 0.811 38 H 0.256 0.744 39 H 0.174 0.826 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.514 15.960 -0.985 17.668 hybrid contribution -0.386 0.296 1.246 1.337 sum 7.129 16.256 0.261 17.752 Atomic orbital electron populations 1.21953 0.97395 0.99631 0.99022 1.20727 0.93699 0.83879 0.97303 1.44238 1.73819 1.11147 1.01042 1.19457 1.23819 1.11566 0.83983 0.90558 1.25557 0.98201 0.99117 1.00441 1.70295 1.33719 1.27335 1.24698 0.85455 0.78359 0.77434 0.80389 1.20916 1.22475 1.19754 1.19916 0.86131 0.98404 0.87899 1.28589 0.93323 0.88566 0.92016 1.74389 1.09478 1.21065 1.15993 1.77884 0.99320 1.12019 1.16536 1.82419 1.14411 1.06756 1.05675 1.48895 1.07415 1.24713 1.30097 1.17610 1.00159 0.87120 0.95115 1.20947 0.95759 0.98937 0.93026 1.20515 1.01261 0.90932 1.00881 1.19054 0.94668 0.88502 0.90580 1.86649 1.49626 1.28372 1.58969 1.24398 0.74749 0.86176 0.83285 1.93087 1.95908 1.85291 1.44453 1.93119 1.45057 1.89339 1.91677 1.21499 0.98388 1.00925 0.98341 1.20956 0.98462 0.90484 0.98851 0.94973 0.92229 0.95473 0.97289 0.91810 0.94268 0.88056 0.88179 0.84021 0.81149 0.74421 0.82584 0.83132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 9.47 71.98 0.68 -4.62 16 2 C 0.17 7.96 5.60 86.38 0.48 8.44 16 3 N -0.58 -26.45 2.52 -706.34 -1.78 -28.23 16 4 C -0.26 -12.59 9.70 84.03 0.81 -11.77 16 5 H 0.08 3.59 7.12 -2.91 -0.02 3.57 16 6 C -0.04 -1.90 5.26 84.86 0.45 -1.45 16 7 N -0.91 -48.56 7.99 21.65 0.17 -48.39 16 8 Si 0.95 41.91 29.56 68.60 2.03 43.94 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 C 0.21 7.80 5.95 85.63 0.51 8.31 16 13 C 0.26 9.92 7.55 138.05 1.04 10.96 16 14 N -0.36 -14.95 12.16 -50.30 -0.61 -15.57 16 15 N -0.06 -2.61 13.39 37.02 0.50 -2.12 16 16 N -0.11 -4.21 13.85 37.02 0.51 -3.70 16 17 N -0.32 -11.82 3.73 -179.05 -0.67 -12.49 16 18 C 0.09 2.92 5.87 38.06 0.22 3.14 16 19 C -0.07 -1.92 9.91 22.37 0.22 -1.70 16 20 C -0.12 -2.83 9.98 22.35 0.22 -2.60 16 21 C 0.12 2.80 6.48 22.51 0.15 2.95 16 22 O -0.32 -6.05 10.43 -92.80 -0.97 -7.02 16 23 C 0.40 5.32 5.98 113.37 0.68 5.99 16 24 F -0.21 -3.27 15.56 44.97 0.70 -2.57 16 25 F -0.21 -4.13 15.59 44.97 0.70 -3.43 16 26 C -0.17 -4.31 8.25 22.35 0.18 -4.12 16 27 C -0.07 -1.87 8.23 22.37 0.18 -1.69 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 2.93 6.46 -2.39 -0.02 2.91 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.01 0.42 8.12 -2.39 -0.02 0.40 16 32 H 0.06 3.44 5.96 -2.39 -0.01 3.43 16 33 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 34 H 0.10 3.34 5.16 -2.39 -0.01 3.33 16 35 H 0.10 3.44 8.11 -2.39 -0.02 3.42 16 36 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 37 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 38 H 0.24 0.29 8.14 -2.39 -0.02 0.28 16 39 H 0.16 3.45 5.09 -2.91 -0.01 3.43 16 40 H 0.15 3.75 6.49 -2.91 -0.02 3.73 16 Total: -1.00 -64.22 345.65 7.53 -56.69 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.11 Total: 11.04 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 5.84 Total: 11.85 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -1.88 Total: -110.49 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.97 Total: -7.02 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 1.40 Total: -6.00 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -64.22 7.53 -56.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121068461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.513 kcal (2) G-P(sol) polarization free energy of solvation -64.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds