Wall clock time and date at job start Tue Mar 31 2020 22:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35995 * 117.00081 * 2 1 4 4 C 1.38558 * 120.07405 * 359.96402 * 3 2 1 5 5 C 1.38247 * 119.99917 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.14468 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.14765 * 0.02562 * 6 5 4 8 8 C 1.38563 * 119.99765 * 359.97368 * 7 6 5 9 9 O 1.35999 * 120.07024 * 180.02562 * 8 7 6 10 10 C 1.42897 * 116.99765 * 359.97438 * 9 8 7 11 11 C 1.53005 * 109.46824 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47269 * 55.00561 * 11 10 9 13 13 C 1.52996 * 109.47303 * 294.99812 * 11 10 9 14 14 C 1.53007 * 109.46899 * 175.00109 * 11 10 9 15 15 N 1.46500 * 109.46618 * 184.99842 * 14 11 10 16 16 C 1.34787 * 119.99745 * 179.97438 * 15 14 11 17 17 O 1.21281 * 119.99333 * 0.02562 * 16 15 14 18 18 C 1.50690 * 119.99874 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47155 * 180.02562 * 18 16 15 20 20 C 1.76194 * 100.00552 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99610 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00334 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00249 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99896 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47322 * 89.99703 * 24 22 20 26 26 H 1.48501 * 109.47218 * 209.99836 * 24 22 20 27 27 H 1.48494 * 109.47323 * 329.99648 * 24 22 20 28 28 H 1.09001 * 109.47221 * 59.99407 * 1 2 3 29 29 H 1.09001 * 109.47520 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46964 * 299.99453 * 1 2 3 31 31 H 1.07995 * 120.00001 * 0.03822 * 4 3 2 32 32 H 1.07998 * 119.92703 * 180.27362 * 5 4 3 33 33 H 1.08004 * 119.92416 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.99988 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47596 * 299.99815 * 10 9 8 36 36 H 1.09004 * 109.47087 * 60.00573 * 10 9 8 37 37 H 1.09004 * 109.46756 * 60.00435 * 13 11 10 38 38 H 1.08995 * 109.47234 * 179.97438 * 13 11 10 39 39 H 1.08998 * 109.47570 * 300.00565 * 13 11 10 40 40 H 1.09001 * 109.46821 * 304.99947 * 14 11 10 41 41 H 1.08995 * 109.46889 * 65.00268 * 14 11 10 42 42 H 0.96998 * 120.00441 * 0.02562 * 15 14 11 43 43 H 1.08993 * 109.47680 * 300.00120 * 18 16 15 44 44 H 1.08999 * 109.47571 * 60.00561 * 18 16 15 45 45 H 0.97000 * 120.00246 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0008 5 6 1.9225 3.6057 -0.0013 6 6 3.3031 3.6797 -0.0005 7 6 4.0604 2.5232 0.0002 8 6 3.4359 1.2862 0.0008 9 8 4.1795 0.1475 0.0020 10 6 5.6002 0.3005 0.0022 11 6 6.2617 -1.0792 0.0030 12 1 5.8875 -1.6620 -0.8386 13 6 5.9323 -1.8019 1.3107 14 6 7.7781 -0.9178 -0.1225 15 7 8.4013 -2.2382 -0.2418 16 6 9.7394 -2.3431 -0.3652 17 8 10.4273 -1.3444 -0.3770 18 6 10.3805 -3.7013 -0.4884 19 16 12.1743 -3.5105 -0.6368 20 6 12.6526 -5.2016 -0.7628 21 1 11.9027 -5.9784 -0.7350 22 6 13.9931 -5.5356 -0.8969 23 7 14.9071 -4.5891 -0.9303 24 14 14.5001 -7.3286 -1.0298 25 1 14.5122 -7.7350 -2.4581 26 1 15.8577 -7.5031 -0.4539 27 1 13.5334 -8.1730 -0.2831 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2147 2.3196 -0.0007 32 1 1.3344 4.5115 0.0026 33 1 3.7910 4.6433 -0.0014 34 1 5.1386 2.5838 0.0012 35 1 5.9067 0.8494 -0.8883 36 1 5.9063 0.8511 0.8918 37 1 4.8521 -1.9168 1.4001 38 1 6.4032 -2.7849 1.3111 39 1 6.3066 -1.2190 2.1523 40 1 8.0083 -0.3259 -1.0084 41 1 8.1641 -0.4124 0.7626 42 1 7.8510 -3.0370 -0.2327 43 1 10.1506 -4.2934 0.3973 44 1 9.9941 -4.2066 -1.3735 45 1 15.8439 -4.8225 -1.0236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125506715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:45 Heat of formation + Delta-G solvation = -94.677853 kcal Electronic energy + Delta-G solvation = -25476.957657 eV Core-core repulsion = 21586.402452 eV Total energy + Delta-G solvation = -3890.555206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.90728 -39.42515 -38.84982 -37.35731 -36.03680 -32.92250 -32.42142 -30.71599 -30.35435 -29.33177 -27.59828 -27.23269 -25.80033 -25.30827 -22.67029 -22.52213 -20.69130 -20.24902 -19.02356 -17.83775 -17.66428 -16.87857 -16.56210 -16.25846 -16.02288 -15.78364 -15.25902 -15.17061 -15.02944 -14.79829 -14.68865 -14.25091 -13.91167 -13.59585 -13.34643 -13.04036 -12.88564 -12.85812 -12.55809 -12.54106 -12.10024 -11.84158 -11.60362 -11.55974 -11.49230 -11.36099 -11.05726 -11.01945 -11.01822 -10.97021 -10.75430 -9.81106 -9.42367 -9.15279 -9.06490 -8.89796 -8.23056 -8.18609 -6.49366 -6.21017 -3.91557 0.88327 1.05765 2.67759 2.88431 3.09861 3.11555 3.23075 3.29239 3.34388 3.34804 3.75745 4.21145 4.35099 4.44141 4.47346 4.51031 4.64321 4.67285 4.73125 4.74552 4.92712 5.01573 5.05022 5.09410 5.12481 5.14292 5.18278 5.23413 5.29282 5.53308 5.59938 5.69582 5.73125 5.77287 5.87729 5.90017 5.95931 6.05509 6.10366 6.14980 6.27322 6.58602 6.70982 7.22877 7.60300 7.69670 8.35932 8.60721 9.24353 10.86421 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.030507 B = 0.001575 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.589883 B =17770.023181 C =18515.835934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.096 3.904 4 C -0.174 4.174 5 C -0.121 4.121 6 C -0.116 4.116 7 C -0.174 4.174 8 C 0.106 3.894 9 O -0.300 6.300 10 C 0.066 3.934 11 C -0.100 4.100 12 H 0.089 0.911 13 C -0.147 4.147 14 C 0.129 3.871 15 N -0.736 5.736 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.467 13.403 2.889 34.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.051 3.949 4 C -0.193 4.193 5 C -0.139 4.139 6 C -0.134 4.134 7 C -0.193 4.193 8 C 0.060 3.940 9 O -0.214 6.214 10 C -0.010 4.010 11 C -0.119 4.119 12 H 0.108 0.892 13 C -0.205 4.205 14 C 0.004 3.996 15 N -0.392 5.392 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -30.088 14.722 2.864 33.619 hybrid contribution -0.863 -2.294 -0.095 2.452 sum -30.952 12.429 2.768 33.469 Atomic orbital electron populations 1.23067 0.78614 1.04068 1.01105 1.86193 1.20950 1.25848 1.88969 1.18286 0.89193 0.85306 1.02141 1.21075 0.99933 0.91611 1.06710 1.20862 0.94622 0.96993 1.01424 1.20901 0.93742 0.97987 1.00781 1.21170 1.00743 0.91128 1.06222 1.18255 0.88211 0.86239 1.01310 1.86140 1.18439 1.28118 1.88668 1.22763 0.78281 0.98076 1.01898 1.21317 0.94194 0.95561 1.00817 0.89231 1.21831 1.02339 1.00438 0.95870 1.21137 0.90053 0.85914 1.02481 1.45945 1.07427 1.08542 1.77253 1.20306 0.81244 0.91413 0.75186 1.90702 1.62057 1.38542 1.47909 1.23528 1.05804 0.96164 1.04919 1.85389 0.91251 1.11076 1.95662 1.22873 0.95241 0.92016 1.58274 0.90910 1.24989 0.95411 0.98605 0.94568 1.70016 1.01317 1.32383 1.46578 0.86166 0.77974 0.82889 0.78452 1.20274 1.20753 1.19703 0.92766 0.88145 0.92769 0.84884 0.85628 0.85487 0.84550 0.91533 0.91488 0.91578 0.92097 0.92375 0.91350 0.91219 0.76662 0.89176 0.89175 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.04 10.28 -34.23 -0.35 -3.40 16 3 C 0.10 0.95 6.70 -39.12 -0.26 0.68 16 4 C -0.17 -1.31 9.04 -39.46 -0.36 -1.67 16 5 C -0.12 -0.83 10.04 -39.57 -0.40 -1.22 16 6 C -0.12 -0.84 10.04 -39.57 -0.40 -1.24 16 7 C -0.17 -1.47 9.04 -39.46 -0.36 -1.82 16 8 C 0.11 1.09 6.70 -39.12 -0.26 0.82 16 9 O -0.30 -3.22 9.46 -34.24 -0.32 -3.55 16 10 C 0.07 0.56 4.12 37.16 0.15 0.71 16 11 C -0.10 -0.89 2.66 -90.62 -0.24 -1.13 16 12 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.15 -1.29 8.96 37.16 0.33 -0.95 16 14 C 0.13 1.44 5.06 -4.04 -0.02 1.42 16 15 N -0.74 -9.69 5.28 -60.29 -0.32 -10.01 16 16 C 0.53 9.89 7.85 -10.99 -0.09 9.80 16 17 O -0.52 -11.73 15.86 5.56 0.09 -11.64 16 18 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 21 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 24 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.22 7.66 -51.93 -0.40 -0.18 16 31 H 0.13 0.68 6.30 -52.49 -0.33 0.35 16 32 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 34 H 0.14 0.94 6.30 -52.49 -0.33 0.61 16 35 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 36 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 37 H 0.07 0.60 7.82 -51.93 -0.41 0.20 16 38 H 0.06 0.51 7.18 -51.93 -0.37 0.14 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.40 4.16 7.66 -40.82 -0.31 3.84 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 391.86 15.07 5.91 5.91 Total: -1.00 -36.21 391.86 -8.68 -44.89 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.69 Total: 0.04 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -0.48 Total: -9.33 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.42 Total: -35.49 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.59 Total: -18.58 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.21 -8.68 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125506715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.787 kcal (2) G-P(sol) polarization free energy of solvation -36.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds