Wall clock time and date at job start Tue Mar 31 2020 22:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81411 * 1 3 3 C 1.81397 * 102.99949 * 2 1 4 4 H 1.08994 * 109.47318 * 50.93610 * 3 2 1 5 5 C 1.53002 * 109.47077 * 290.93869 * 3 2 1 6 6 O 1.42899 * 109.46965 * 295.00482 * 5 3 2 7 7 C 1.53003 * 109.47126 * 170.94100 * 3 2 1 8 8 H 1.09001 * 109.47082 * 65.28803 * 7 3 2 9 9 C 1.52995 * 109.46991 * 185.29227 * 7 3 2 10 10 N 1.46500 * 109.46806 * 305.29423 * 7 3 2 11 11 C 1.34770 * 119.99910 * 150.77544 * 10 7 3 12 12 O 1.21286 * 120.00352 * 359.97438 * 11 10 7 13 13 C 1.50705 * 120.00039 * 179.97438 * 11 10 7 14 14 C 1.50702 * 109.47049 * 179.97438 * 13 11 10 15 15 C 1.38301 * 119.92827 * 269.72144 * 14 13 11 16 16 C 1.38099 * 120.06745 * 179.72486 * 15 14 13 17 17 C 1.38884 * 119.93005 * 0.57483 * 16 15 14 18 18 O 1.35751 * 120.06940 * 179.68197 * 17 16 15 19 19 C 1.34826 * 116.99853 * 186.04521 * 18 17 16 20 20 H 1.07997 * 120.00035 * 5.45837 * 19 18 17 21 21 C 1.38657 * 119.99996 * 185.46223 * 19 18 17 22 22 N 1.31557 * 119.99826 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00037 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46901 * 90.00163 * 23 21 19 25 25 H 1.48497 * 109.47129 * 209.99926 * 23 21 19 26 26 H 1.48499 * 109.47468 * 330.00152 * 23 21 19 27 27 C 1.38878 * 119.85780 * 359.70011 * 17 16 15 28 28 C 1.38093 * 119.93607 * 0.02562 * 27 17 16 29 29 H 1.08998 * 109.46323 * 65.04352 * 1 2 3 30 30 H 1.09003 * 109.47011 * 185.04291 * 1 2 3 31 31 H 1.08994 * 109.46830 * 305.04402 * 1 2 3 32 32 H 1.08995 * 109.47179 * 175.00158 * 5 3 2 33 33 H 1.08999 * 109.47202 * 55.00196 * 5 3 2 34 34 H 0.96704 * 113.99786 * 180.02562 * 6 5 3 35 35 H 1.09005 * 109.47264 * 60.00242 * 9 7 3 36 36 H 1.08998 * 109.47088 * 179.97438 * 9 7 3 37 37 H 1.09002 * 109.47331 * 299.99963 * 9 7 3 38 38 H 0.96998 * 120.00015 * 330.76527 * 10 7 3 39 39 H 1.09001 * 109.46870 * 299.99206 * 13 11 10 40 40 H 1.08997 * 109.47323 * 59.99809 * 13 11 10 41 41 H 1.08003 * 119.96508 * 359.97438 * 15 14 13 42 42 H 1.08003 * 120.03382 * 180.27386 * 16 15 14 43 43 H 0.96998 * 120.00250 * 180.02562 * 22 21 19 44 44 H 1.08005 * 120.02909 * 179.97438 * 27 17 16 45 45 H 1.08001 * 119.96801 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.6729 2.2672 0.7979 5 6 1.8346 2.3804 -1.3473 6 8 2.6382 1.8067 -2.3803 7 6 3.7249 1.9440 0.2271 8 1 4.2717 1.5263 -0.6183 9 6 4.0493 3.4333 0.3588 10 7 4.1182 1.2480 1.4548 11 6 5.3646 0.7502 1.5774 12 8 6.1605 0.8780 0.6712 13 6 5.7694 0.0348 2.8405 14 6 7.2011 -0.4208 2.7229 15 6 7.4871 -1.6706 2.2044 16 6 8.7983 -2.0887 2.0901 17 6 9.8296 -1.2575 2.5076 18 8 11.1192 -1.6683 2.4025 19 6 12.0622 -0.8682 2.9397 20 1 11.7715 0.0068 3.5021 21 6 13.4051 -1.1686 2.7699 22 7 13.7592 -2.2347 2.0852 23 14 14.7115 -0.0598 3.5135 24 1 15.0357 -0.5277 4.8852 25 1 15.9351 -0.1040 2.6733 26 1 14.2023 1.3339 3.5734 27 6 9.5387 -0.0054 3.0332 28 6 8.2258 0.4093 3.1396 29 1 -0.3632 0.4336 -0.9317 30 1 -0.3633 -1.0237 0.0903 31 1 -0.3633 0.5901 0.8413 32 1 1.9970 3.4577 -1.3165 33 1 0.7830 2.1771 -1.5499 34 1 2.4466 2.1499 -3.2639 35 1 3.5025 3.8509 1.2044 36 1 5.1198 3.5591 0.5211 37 1 3.7566 3.9511 -0.5546 38 1 3.4816 1.1456 2.1794 39 1 5.6719 0.7122 3.6889 40 1 5.1242 -0.8308 2.9905 41 1 6.6844 -2.3186 1.8847 42 1 9.0213 -3.0631 1.6809 43 1 14.6986 -2.4451 1.9667 44 1 10.3386 0.6431 3.3592 45 1 7.9990 1.3827 3.5487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126303714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:38 Heat of formation + Delta-G solvation = -90.503383 kcal Electronic energy + Delta-G solvation = -26434.440812 eV Core-core repulsion = 22544.066625 eV Total energy + Delta-G solvation = -3890.374187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.87737 -38.80338 -37.85252 -36.45814 -35.49080 -32.51734 -32.17193 -31.02253 -30.03049 -29.57626 -28.59802 -26.59926 -25.15522 -24.40665 -21.85206 -21.43275 -20.78357 -19.93005 -18.02758 -17.87642 -17.43943 -16.81517 -16.66149 -15.84902 -15.29578 -15.27470 -14.66868 -14.56163 -14.36606 -14.11504 -13.96668 -13.85289 -13.60698 -13.56929 -13.33675 -13.27675 -13.06233 -12.69785 -12.57789 -12.34679 -12.07882 -11.81946 -11.62838 -11.38927 -11.31177 -11.17806 -10.76065 -10.65838 -10.50178 -10.49255 -10.34191 -10.08298 -9.54906 -9.25459 -9.06953 -8.73051 -8.02804 -7.91656 -7.04815 -6.36130 -3.94385 1.24366 2.20983 2.36998 2.38301 2.93017 3.16907 3.19089 3.24095 3.27095 3.71192 4.04325 4.25740 4.36384 4.65283 4.67734 4.73176 4.79280 4.85812 4.90090 5.06072 5.14055 5.20519 5.23007 5.30478 5.37355 5.41839 5.44668 5.48415 5.79332 5.84244 5.90975 5.98385 5.99517 6.33734 6.48489 6.54242 6.82477 7.03500 7.16404 7.22062 7.35283 7.48759 7.54934 7.60661 7.96164 8.09355 8.48359 9.09646 9.81847 10.82262 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022786 B = 0.002069 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.552784 B =13531.747915 C =13871.411919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.213 6.213 3 C -0.071 4.071 4 H 0.100 0.900 5 C 0.084 3.916 6 O -0.553 6.553 7 C 0.165 3.835 8 H 0.110 0.890 9 C -0.158 4.158 10 N -0.732 5.732 11 C 0.513 3.487 12 O -0.519 6.519 13 C -0.079 4.079 14 C -0.167 4.167 15 C -0.059 4.059 16 C -0.191 4.191 17 C 0.156 3.844 18 O -0.179 6.179 19 C -0.389 4.389 20 H 0.091 0.909 21 C 0.037 3.963 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.232 4.232 28 C -0.058 4.058 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.380 0.620 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.576 10.924 -2.330 31.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.014 5.986 3 C -0.200 4.200 4 H 0.118 0.882 5 C 0.003 3.997 6 O -0.358 6.358 7 C 0.058 3.942 8 H 0.128 0.872 9 C -0.218 4.218 10 N -0.386 5.386 11 C 0.299 3.701 12 O -0.392 6.392 13 C -0.119 4.119 14 C -0.168 4.168 15 C -0.077 4.077 16 C -0.210 4.210 17 C 0.102 3.898 18 O -0.083 6.083 19 C -0.466 4.466 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.193 1.193 27 C -0.251 4.251 28 C -0.076 4.076 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.227 0.773 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -27.723 9.460 -2.656 29.412 hybrid contribution -0.957 2.025 0.225 2.251 sum -28.680 11.485 -2.432 30.989 Atomic orbital electron populations 1.23480 0.95893 1.06534 1.04469 1.87454 1.04996 1.08591 1.97566 1.23728 1.00826 0.96135 0.99335 0.88197 1.22182 0.93755 0.96323 0.87400 1.86629 1.62649 1.67994 1.18488 1.20532 0.90675 0.93090 0.89857 0.87212 1.22214 1.03190 0.94695 1.01722 1.46105 1.14349 1.59468 1.18665 1.20997 0.81014 0.78207 0.89833 1.90749 1.50654 1.56633 1.41195 1.20400 0.96049 1.00417 0.95056 1.18644 0.92317 0.96295 1.09582 1.20415 0.95119 0.95072 0.97128 1.20152 0.90958 1.00666 1.09270 1.19393 0.86094 0.91863 0.92415 1.83992 1.10520 1.45492 1.68302 1.21306 0.84949 1.08302 1.31997 0.89181 1.25281 0.97134 0.97246 0.96978 1.70043 1.17607 1.24530 1.37748 0.85721 0.79538 0.79535 0.78671 1.19944 1.20321 1.19256 1.21096 0.96636 0.97887 1.09505 1.20495 0.92203 0.97274 0.97614 0.90844 0.88009 0.90717 0.92374 0.93488 0.77268 0.92582 0.91177 0.91650 0.76854 0.89182 0.88921 0.87345 0.86588 0.92122 0.85667 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 10.47 101.05 1.06 0.32 16 2 S -0.21 -1.97 20.95 -107.50 -2.25 -4.22 16 3 C -0.07 -0.52 2.27 -26.73 -0.06 -0.59 16 4 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 5 C 0.08 0.50 6.23 37.16 0.23 0.74 16 6 O -0.55 -4.47 12.44 -35.23 -0.44 -4.91 16 7 C 0.16 1.69 2.11 -67.93 -0.14 1.54 16 8 H 0.11 1.58 6.69 -51.93 -0.35 1.23 16 9 C -0.16 -1.39 9.28 37.15 0.34 -1.05 16 10 N -0.73 -7.76 4.38 -53.81 -0.24 -8.00 16 11 C 0.51 7.55 7.82 -10.99 -0.09 7.46 16 12 O -0.52 -10.33 15.63 5.55 0.09 -10.24 16 13 C -0.08 -1.06 5.83 -29.03 -0.17 -1.23 16 14 C -0.17 -3.08 4.38 -104.57 -0.46 -3.53 16 15 C -0.06 -1.16 9.69 -39.61 -0.38 -1.54 16 16 C -0.19 -4.38 9.99 -39.39 -0.39 -4.77 16 17 C 0.16 4.02 6.65 -39.11 -0.26 3.76 16 18 O -0.18 -5.38 9.76 0.06 0.00 -5.37 16 19 C -0.39 -11.32 9.44 30.89 0.29 -11.03 16 20 H 0.09 2.43 5.30 -52.49 -0.28 2.15 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -26.18 13.67 55.48 0.76 -25.43 16 23 Si 0.94 21.23 29.55 -169.99 -5.02 16.21 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 C -0.23 -5.41 9.13 -39.40 -0.36 -5.77 16 28 C -0.06 -1.14 9.69 -39.61 -0.38 -1.53 16 29 H 0.07 0.35 7.39 -51.92 -0.38 -0.03 16 30 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.26 6.82 -51.93 -0.35 -0.10 16 33 H 0.05 0.22 7.12 -51.93 -0.37 -0.15 16 34 H 0.38 1.37 9.12 45.56 0.42 1.79 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.48 6.69 -51.93 -0.35 0.13 16 38 H 0.40 3.07 8.64 -40.82 -0.35 2.71 16 39 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 40 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 41 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 42 H 0.12 2.56 8.06 -52.48 -0.42 2.14 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.13 2.91 5.72 -52.48 -0.30 2.61 16 45 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -37.39 389.03 -7.78 -45.17 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.67 Total: 7.18 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -0.87 Total: -16.25 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.52 Total: -33.42 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.35 Total: -20.52 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.97 SS G_CDS: -2.25 Total: -4.22 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.39 -7.78 -45.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126303714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.331 kcal (2) G-P(sol) polarization free energy of solvation -37.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds