Wall clock time and date at job start Tue Mar 31 2020 22:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81411 * 1 3 3 C 1.81397 * 102.99949 * 2 1 4 4 H 1.08994 * 109.47318 * 50.93610 * 3 2 1 5 5 C 1.53002 * 109.47077 * 290.93869 * 3 2 1 6 6 O 1.42899 * 109.46965 * 295.00482 * 5 3 2 7 7 C 1.53003 * 109.47126 * 170.94100 * 3 2 1 8 8 H 1.09001 * 109.47082 * 65.28803 * 7 3 2 9 9 C 1.52995 * 109.46991 * 185.29227 * 7 3 2 10 10 N 1.46500 * 109.46806 * 305.29423 * 7 3 2 11 11 C 1.34770 * 119.99910 * 150.77544 * 10 7 3 12 12 O 1.21286 * 120.00352 * 359.97438 * 11 10 7 13 13 C 1.50705 * 120.00039 * 179.97438 * 11 10 7 14 14 C 1.50702 * 109.47049 * 179.97438 * 13 11 10 15 15 C 1.38301 * 119.92827 * 269.72144 * 14 13 11 16 16 C 1.38099 * 120.06745 * 179.72486 * 15 14 13 17 17 C 1.38884 * 119.93005 * 0.57483 * 16 15 14 18 18 O 1.35751 * 120.06940 * 179.68197 * 17 16 15 19 19 C 1.34826 * 116.99853 * 186.04521 * 18 17 16 20 20 H 1.07997 * 120.00035 * 5.45837 * 19 18 17 21 21 C 1.38657 * 119.99996 * 185.46223 * 19 18 17 22 22 N 1.31557 * 119.99826 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00037 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46901 * 90.00163 * 23 21 19 25 25 H 1.48497 * 109.47129 * 209.99926 * 23 21 19 26 26 H 1.48499 * 109.47468 * 330.00152 * 23 21 19 27 27 C 1.38878 * 119.85780 * 359.70011 * 17 16 15 28 28 C 1.38093 * 119.93607 * 0.02562 * 27 17 16 29 29 H 1.08998 * 109.46323 * 65.04352 * 1 2 3 30 30 H 1.09003 * 109.47011 * 185.04291 * 1 2 3 31 31 H 1.08994 * 109.46830 * 305.04402 * 1 2 3 32 32 H 1.08995 * 109.47179 * 175.00158 * 5 3 2 33 33 H 1.08999 * 109.47202 * 55.00196 * 5 3 2 34 34 H 0.96704 * 113.99786 * 180.02562 * 6 5 3 35 35 H 1.09005 * 109.47264 * 60.00242 * 9 7 3 36 36 H 1.08998 * 109.47088 * 179.97438 * 9 7 3 37 37 H 1.09002 * 109.47331 * 299.99963 * 9 7 3 38 38 H 0.96998 * 120.00015 * 330.76527 * 10 7 3 39 39 H 1.09001 * 109.46870 * 299.99206 * 13 11 10 40 40 H 1.08997 * 109.47323 * 59.99809 * 13 11 10 41 41 H 1.08003 * 119.96508 * 359.97438 * 15 14 13 42 42 H 1.08003 * 120.03382 * 180.27386 * 16 15 14 43 43 H 0.96998 * 120.00250 * 180.02562 * 22 21 19 44 44 H 1.08005 * 120.02909 * 179.97438 * 27 17 16 45 45 H 1.08001 * 119.96801 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.6729 2.2672 0.7979 5 6 1.8346 2.3804 -1.3473 6 8 2.6382 1.8067 -2.3803 7 6 3.7249 1.9440 0.2271 8 1 4.2717 1.5263 -0.6183 9 6 4.0493 3.4333 0.3588 10 7 4.1182 1.2480 1.4548 11 6 5.3646 0.7502 1.5774 12 8 6.1605 0.8780 0.6712 13 6 5.7694 0.0348 2.8405 14 6 7.2011 -0.4208 2.7229 15 6 7.4871 -1.6706 2.2044 16 6 8.7983 -2.0887 2.0901 17 6 9.8296 -1.2575 2.5076 18 8 11.1192 -1.6683 2.4025 19 6 12.0622 -0.8682 2.9397 20 1 11.7715 0.0068 3.5021 21 6 13.4051 -1.1686 2.7699 22 7 13.7592 -2.2347 2.0852 23 14 14.7115 -0.0598 3.5135 24 1 15.0357 -0.5277 4.8852 25 1 15.9351 -0.1040 2.6733 26 1 14.2023 1.3339 3.5734 27 6 9.5387 -0.0054 3.0332 28 6 8.2258 0.4093 3.1396 29 1 -0.3632 0.4336 -0.9317 30 1 -0.3633 -1.0237 0.0903 31 1 -0.3633 0.5901 0.8413 32 1 1.9970 3.4577 -1.3165 33 1 0.7830 2.1771 -1.5499 34 1 2.4466 2.1499 -3.2639 35 1 3.5025 3.8509 1.2044 36 1 5.1198 3.5591 0.5211 37 1 3.7566 3.9511 -0.5546 38 1 3.4816 1.1456 2.1794 39 1 5.6719 0.7122 3.6889 40 1 5.1242 -0.8308 2.9905 41 1 6.6844 -2.3186 1.8847 42 1 9.0213 -3.0631 1.6809 43 1 14.6986 -2.4451 1.9667 44 1 10.3386 0.6431 3.3592 45 1 7.9990 1.3827 3.5487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126303714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:37 Heat of formation + Delta-G solvation = -119.138419 kcal Electronic energy + Delta-G solvation = -26435.682520 eV Core-core repulsion = 22544.066625 eV Total energy + Delta-G solvation = -3891.615895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.12660 -40.46408 -38.69370 -38.06861 -36.40080 -34.39244 -33.40121 -32.32986 -31.76078 -30.17146 -29.15074 -28.16248 -27.00795 -25.20277 -23.62087 -22.67670 -21.75524 -21.21171 -19.83825 -18.85487 -18.56990 -18.21735 -17.63528 -16.71102 -16.60136 -16.36073 -15.97373 -15.86893 -15.79840 -15.48439 -15.15240 -14.93451 -14.80036 -14.56462 -14.36797 -14.30806 -14.10698 -14.00505 -13.62974 -13.58384 -13.27183 -12.95761 -12.78591 -12.66358 -12.45959 -12.35735 -12.26766 -12.20270 -12.11801 -12.02147 -11.19976 -11.01916 -10.87221 -10.71698 -10.59458 -10.02795 -9.75344 -8.88731 -8.58357 -8.46634 -6.14782 0.62314 0.67425 0.70421 1.33908 1.44117 1.52384 1.70142 1.80956 2.18302 2.28629 2.86084 3.19295 3.25553 3.52083 3.67590 3.85710 3.89453 4.06646 4.17359 4.20330 4.24418 4.33374 4.37586 4.39471 4.45705 4.50610 4.51482 4.61297 4.65784 4.72936 4.76963 4.81979 4.94251 5.06925 5.12316 5.14997 5.26005 5.31917 5.57351 5.58478 5.72505 5.79698 6.03277 6.24182 6.69034 6.92752 6.97642 7.44310 7.79617 8.77100 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022786 B = 0.002069 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.552784 B =13531.747915 C =13871.411919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.292 6.292 3 C -0.054 4.054 4 H 0.132 0.868 5 C 0.080 3.920 6 O -0.584 6.584 7 C 0.165 3.835 8 H 0.063 0.937 9 C -0.152 4.152 10 N -0.710 5.710 11 C 0.513 3.487 12 O -0.582 6.582 13 C -0.077 4.077 14 C -0.143 4.143 15 C -0.060 4.060 16 C -0.207 4.207 17 C 0.111 3.889 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.026 4.026 22 N -0.922 5.922 23 Si 1.022 2.978 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.254 1.254 27 C -0.242 4.242 28 C -0.060 4.060 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.079 0.921 38 H 0.416 0.584 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.142 0.858 42 H 0.111 0.889 43 H 0.273 0.727 44 H 0.118 0.882 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.759 13.662 -0.710 36.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.065 6.065 3 C -0.183 4.183 4 H 0.150 0.850 5 C 0.000 4.000 6 O -0.392 6.392 7 C 0.059 3.941 8 H 0.081 0.919 9 C -0.212 4.212 10 N -0.363 5.363 11 C 0.300 3.700 12 O -0.461 6.461 13 C -0.116 4.116 14 C -0.145 4.145 15 C -0.078 4.078 16 C -0.226 4.226 17 C 0.061 3.939 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.223 4.223 22 N -0.561 5.561 23 Si 0.840 3.160 24 H -0.185 1.185 25 H -0.196 1.196 26 H -0.178 1.178 27 C -0.262 4.262 28 C -0.078 4.078 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.245 0.755 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.253 0.747 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.160 0.840 42 H 0.129 0.871 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -32.031 12.225 -1.015 34.299 hybrid contribution -0.105 1.202 -0.334 1.252 sum -32.136 13.427 -1.349 34.855 Atomic orbital electron populations 1.23473 0.91894 1.07219 1.05817 1.87707 1.09539 1.11456 1.97798 1.23724 0.98625 0.94627 1.01367 0.85030 1.22343 0.94368 0.97122 0.86142 1.86600 1.63642 1.68947 1.20020 1.20479 0.92281 0.93500 0.87885 0.91883 1.22151 1.01541 0.93766 1.03700 1.45886 1.13274 1.57867 1.19310 1.21128 0.81616 0.77908 0.89308 1.90752 1.52655 1.59356 1.43307 1.20520 0.92712 1.02564 0.95832 1.19260 0.95094 0.94872 1.05226 1.20855 0.94361 0.96326 0.96215 1.20419 0.92079 1.00519 1.09567 1.19926 0.85485 0.93803 0.94642 1.83948 1.12174 1.47190 1.70782 1.21817 0.85677 1.08714 1.32723 0.88249 1.26655 0.99378 0.98956 0.97347 1.70197 1.18309 1.27153 1.40410 0.84555 0.75777 0.77558 0.78076 1.18474 1.19552 1.17764 1.21226 0.98347 0.96991 1.09606 1.20925 0.90887 0.98925 0.97014 0.89948 0.87814 0.88707 0.90348 0.91661 0.75477 0.89772 0.94256 0.90207 0.74673 0.85170 0.85625 0.84048 0.87107 0.91848 0.86415 0.84272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.47 113.37 1.19 0.30 16 2 S -0.29 -4.75 20.95 -56.49 -1.18 -5.94 16 3 C -0.05 -0.63 2.27 30.60 0.07 -0.56 16 4 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 5 C 0.08 0.72 6.23 71.98 0.45 1.17 16 6 O -0.58 -8.81 12.44 -148.98 -1.85 -10.66 16 7 C 0.16 3.05 2.11 44.99 0.09 3.14 16 8 H 0.06 1.83 6.69 -2.39 -0.02 1.82 16 9 C -0.15 -2.29 9.28 71.98 0.67 -1.62 16 10 N -0.71 -12.95 4.38 -442.53 -1.94 -14.89 16 11 C 0.51 13.85 7.82 87.66 0.69 14.53 16 12 O -0.58 -23.00 15.63 -3.05 -0.05 -23.04 16 13 C -0.08 -1.73 5.83 29.10 0.17 -1.56 16 14 C -0.14 -4.94 4.38 -19.83 -0.09 -5.03 16 15 C -0.06 -2.29 9.69 22.25 0.22 -2.07 16 16 C -0.21 -9.85 9.99 22.39 0.22 -9.63 16 17 C 0.11 6.08 6.65 22.58 0.15 6.23 16 18 O -0.23 -15.08 9.76 -22.71 -0.22 -15.30 16 19 C -0.41 -25.45 9.44 67.92 0.64 -24.81 16 20 H 0.10 5.64 5.30 -2.91 -0.02 5.62 16 21 C -0.03 -1.57 5.49 84.83 0.47 -1.11 16 22 N -0.92 -59.13 13.67 21.61 0.30 -58.84 16 23 Si 1.02 44.84 29.55 68.60 2.03 46.86 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 27 C -0.24 -11.61 9.13 22.39 0.20 -11.40 16 28 C -0.06 -2.27 9.69 22.25 0.22 -2.06 16 29 H 0.08 0.50 7.39 -2.39 -0.02 0.48 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.40 6.82 -2.39 -0.02 0.38 16 33 H 0.07 0.36 7.12 -2.39 -0.02 0.35 16 34 H 0.40 2.47 9.12 -74.05 -0.68 1.79 16 35 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.96 6.69 -2.39 -0.02 0.95 16 38 H 0.42 4.59 8.64 -92.71 -0.80 3.79 16 39 H 0.13 2.00 8.08 -2.39 -0.02 1.99 16 40 H 0.13 2.12 8.08 -2.39 -0.02 2.10 16 41 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.11 5.22 8.06 -2.91 -0.02 5.20 16 43 H 0.27 15.95 8.31 -92.71 -0.77 15.17 16 44 H 0.12 5.68 5.72 -2.91 -0.02 5.66 16 45 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -91.33 389.03 1.98 -89.34 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -0.45 Total: 26.93 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 5.35 Total: -34.46 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -1.64 Total: -73.73 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -2.12 Total: -49.01 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: -4.75 SS G_CDS: -1.18 Total: -5.94 kcal Total: -91.33 1.98 -89.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126303714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.795 kcal (2) G-P(sol) polarization free energy of solvation -91.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds