Wall clock time and date at job start Tue Mar 31 2020 22:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81402 * 102.99961 * 2 1 4 4 H 1.08999 * 109.46945 * 304.99818 * 3 2 1 5 5 C 1.52997 * 109.46936 * 65.00283 * 3 2 1 6 6 O 1.42896 * 109.47450 * 65.00026 * 5 3 2 7 7 C 1.53002 * 109.46996 * 185.00035 * 3 2 1 8 8 H 1.09006 * 109.47059 * 179.97438 * 7 3 2 9 9 C 1.52997 * 109.47076 * 60.00333 * 7 3 2 10 10 N 1.46494 * 109.47293 * 300.00001 * 7 3 2 11 11 C 1.34780 * 119.99917 * 205.00374 * 10 7 3 12 12 O 1.21282 * 120.00129 * 359.97438 * 11 10 7 13 13 C 1.50702 * 119.99933 * 180.02562 * 11 10 7 14 14 C 1.50701 * 109.47242 * 179.97438 * 13 11 10 15 15 C 1.38299 * 119.93217 * 269.72899 * 14 13 11 16 16 C 1.38093 * 120.06953 * 179.72477 * 15 14 13 17 17 C 1.38883 * 119.92808 * 0.56550 * 16 15 14 18 18 O 1.35754 * 120.06438 * 179.68623 * 17 16 15 19 19 C 1.34826 * 116.99724 * 174.49160 * 18 17 16 20 20 H 1.07998 * 120.00100 * 5.04739 * 19 18 17 21 21 C 1.38654 * 119.99970 * 185.05457 * 19 18 17 22 22 N 1.31557 * 120.00012 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99959 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47263 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47148 * 119.99951 * 23 21 19 26 26 H 1.48504 * 109.47096 * 239.99883 * 23 21 19 27 27 C 1.38871 * 119.86468 * 359.70509 * 17 16 15 28 28 C 1.38101 * 119.93230 * 0.02562 * 27 17 16 29 29 H 1.08999 * 109.47128 * 299.99421 * 1 2 3 30 30 H 1.08994 * 109.47426 * 60.00165 * 1 2 3 31 31 H 1.09006 * 109.46838 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47120 * 185.00294 * 5 3 2 33 33 H 1.09003 * 109.47111 * 304.99658 * 5 3 2 34 34 H 0.96699 * 114.00019 * 179.97438 * 6 5 3 35 35 H 1.08999 * 109.47683 * 59.99717 * 9 7 3 36 36 H 1.09005 * 109.47066 * 179.97438 * 9 7 3 37 37 H 1.09002 * 109.47342 * 299.99668 * 9 7 3 38 38 H 0.97002 * 120.00191 * 24.99733 * 10 7 3 39 39 H 1.09002 * 109.47056 * 59.99417 * 13 11 10 40 40 H 1.09001 * 109.46884 * 299.99904 * 13 11 10 41 41 H 1.08005 * 119.96050 * 359.97425 * 15 14 13 42 42 H 1.07999 * 120.03730 * 180.26989 * 16 15 14 43 43 H 0.97002 * 120.00021 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.03853 * 179.97438 * 27 17 16 45 45 H 1.07997 * 119.96732 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7428 2.4015 1.3074 6 8 2.4730 1.8450 2.4024 7 6 3.7370 1.9412 -0.1257 8 1 3.9821 3.0033 -0.1262 9 6 4.2162 1.3072 -1.4331 10 7 4.3990 1.2872 1.0056 11 6 5.6188 1.7002 1.4031 12 8 6.1686 2.6131 0.8239 13 6 6.3002 1.0271 2.5666 14 6 7.6415 1.6715 2.8047 15 6 8.7660 1.1803 2.1668 16 6 9.9956 1.7721 2.3785 17 6 10.1042 2.8544 3.2420 18 8 11.3126 3.4344 3.4570 19 6 11.3304 4.5489 4.2154 20 1 10.4230 4.8950 4.6881 21 6 12.5134 5.2510 4.3885 22 7 13.6188 4.8292 3.8131 23 14 12.5379 6.7956 5.4388 24 1 11.1756 7.0545 5.9702 25 1 13.4828 6.6106 6.5693 26 1 12.9748 7.9494 4.6121 27 6 8.9741 3.3418 3.8854 28 6 7.7464 2.7491 3.6653 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9075 3.4784 1.2707 33 1 0.6797 2.2009 1.4401 34 1 2.2211 2.2020 3.2650 35 1 3.7236 1.7938 -2.2749 36 1 5.2954 1.4313 -1.5229 37 1 3.9710 0.2451 -1.4332 38 1 3.9595 0.5569 1.4687 39 1 6.4401 -0.0306 2.3434 40 1 5.6830 1.1315 3.4590 41 1 8.6817 0.3353 1.4993 42 1 10.8727 1.3908 1.8767 43 1 14.4464 5.3206 3.9339 44 1 9.0554 4.1831 4.5578 45 1 6.8672 3.1275 4.1656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126303925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:42 Heat of formation + Delta-G solvation = -84.945092 kcal Electronic energy + Delta-G solvation = -26765.324637 eV Core-core repulsion = 22875.191476 eV Total energy + Delta-G solvation = -3890.133161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.83763 -38.80548 -37.71061 -36.40911 -35.35434 -32.45983 -32.08912 -30.96903 -30.03343 -29.81359 -28.75512 -26.48847 -25.03955 -23.86717 -21.86773 -21.80892 -20.70897 -19.93304 -17.97236 -17.87166 -17.23776 -16.81990 -16.67866 -15.63810 -15.31490 -15.12758 -14.90605 -14.53470 -14.31649 -14.20326 -14.01464 -13.73581 -13.57780 -13.48767 -13.29673 -13.15766 -12.95561 -12.61508 -12.58711 -12.35268 -12.09904 -11.90010 -11.67985 -11.35298 -11.19140 -11.17254 -10.74509 -10.64472 -10.59005 -10.49540 -10.34960 -10.13386 -9.46320 -9.21901 -8.81355 -8.73583 -8.02657 -8.01613 -7.03920 -6.36270 -3.94482 1.16525 2.09740 2.37001 2.40535 3.02856 3.17106 3.19000 3.24634 3.41783 3.71807 4.04059 4.15823 4.43539 4.63374 4.68432 4.69628 4.87496 4.90022 4.98482 5.14038 5.18482 5.20849 5.26263 5.27945 5.40731 5.47030 5.50246 5.64670 5.82612 5.87772 5.88039 5.98302 6.12851 6.33331 6.54313 6.66893 6.83033 7.04012 7.16767 7.22508 7.36222 7.50193 7.55566 7.82371 7.97184 8.09599 8.61360 9.09771 9.81963 10.82245 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.002106 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.494900 B =13289.094451 C =13676.182886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.225 6.225 3 C -0.071 4.071 4 H 0.109 0.891 5 C 0.083 3.917 6 O -0.550 6.550 7 C 0.170 3.830 8 H 0.095 0.905 9 C -0.168 4.168 10 N -0.710 5.710 11 C 0.512 3.488 12 O -0.532 6.532 13 C -0.078 4.078 14 C -0.164 4.164 15 C -0.061 4.061 16 C -0.191 4.191 17 C 0.155 3.845 18 O -0.181 6.181 19 C -0.389 4.389 20 H 0.092 0.908 21 C 0.037 3.963 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.276 1.276 27 C -0.232 4.232 28 C -0.057 4.057 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.378 0.622 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.407 0.593 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.268 0.732 44 H 0.125 0.875 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.174 -8.495 -5.633 30.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.001 5.999 3 C -0.200 4.200 4 H 0.127 0.873 5 C 0.003 3.997 6 O -0.356 6.356 7 C 0.063 3.937 8 H 0.112 0.888 9 C -0.226 4.226 10 N -0.366 5.366 11 C 0.299 3.701 12 O -0.408 6.408 13 C -0.118 4.118 14 C -0.165 4.165 15 C -0.079 4.079 16 C -0.210 4.210 17 C 0.102 3.898 18 O -0.084 6.084 19 C -0.465 4.465 20 H 0.109 0.891 21 C -0.167 4.167 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.252 4.252 28 C -0.076 4.076 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.226 0.774 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.245 0.755 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.078 0.922 44 H 0.143 0.857 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -27.345 -9.029 -6.619 29.548 hybrid contribution -1.579 1.924 1.107 2.724 sum -28.924 -7.105 -5.512 30.290 Atomic orbital electron populations 1.23474 0.95270 1.06551 1.04667 1.86965 1.06092 1.09297 1.97524 1.23807 1.00624 0.95721 0.99862 0.87276 1.22164 0.94152 0.96627 0.86742 1.86546 1.64254 1.67781 1.16986 1.20471 0.86693 0.99083 0.87428 0.88755 1.22266 1.02609 1.01745 0.96008 1.46049 1.18586 1.38629 1.33362 1.20924 0.80691 0.83491 0.84973 1.90721 1.64454 1.29401 1.56200 1.20369 0.95032 0.99803 0.96626 1.18681 0.92771 1.00852 1.04176 1.20409 0.91699 0.98347 0.97468 1.20151 0.97803 0.99471 1.03604 1.19372 0.86033 0.92146 0.92269 1.83977 1.23694 1.38273 1.62494 1.21363 0.97039 1.01102 1.26998 0.89102 1.25278 0.94397 0.99039 0.97953 1.70054 0.99540 1.38966 1.41462 0.85656 0.78707 0.80135 0.78961 1.19161 1.20230 1.20210 1.21096 0.92701 1.04740 1.06629 1.20494 0.96165 0.94292 0.96612 0.90656 0.90619 0.88026 0.92601 0.93704 0.77430 0.91941 0.91433 0.91305 0.75473 0.89317 0.89088 0.87427 0.86629 0.92199 0.85700 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.59 10.45 101.05 1.06 0.46 16 2 S -0.22 -1.65 18.97 -107.50 -2.04 -3.69 16 3 C -0.07 -0.49 2.58 -26.73 -0.07 -0.56 16 4 H 0.11 0.59 8.14 -51.92 -0.42 0.17 16 5 C 0.08 0.49 6.58 37.16 0.24 0.74 16 6 O -0.55 -3.75 10.35 -35.23 -0.36 -4.11 16 7 C 0.17 1.70 2.31 -67.93 -0.16 1.54 16 8 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 9 C -0.17 -1.67 9.25 37.16 0.34 -1.33 16 10 N -0.71 -7.95 3.42 -53.81 -0.18 -8.13 16 11 C 0.51 7.61 7.79 -10.98 -0.09 7.52 16 12 O -0.53 -10.40 15.70 5.56 0.09 -10.31 16 13 C -0.08 -1.08 5.83 -29.03 -0.17 -1.25 16 14 C -0.16 -3.02 4.38 -104.57 -0.46 -3.47 16 15 C -0.06 -1.19 9.69 -39.61 -0.38 -1.57 16 16 C -0.19 -4.36 9.99 -39.40 -0.39 -4.75 16 17 C 0.16 3.99 6.65 -39.11 -0.26 3.73 16 18 O -0.18 -5.40 9.76 0.05 0.00 -5.40 16 19 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 20 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 21 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -26.17 13.67 55.48 0.76 -25.41 16 23 Si 0.94 21.24 29.55 -169.99 -5.02 16.22 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 27 C -0.23 -5.40 9.17 -39.40 -0.36 -5.77 16 28 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 29 H 0.07 0.30 7.02 -51.92 -0.36 -0.07 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.04 0.20 6.72 -51.93 -0.35 -0.15 16 34 H 0.38 1.31 9.12 45.56 0.42 1.73 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.67 6.92 -51.93 -0.36 0.31 16 38 H 0.41 4.12 6.34 -40.82 -0.26 3.86 16 39 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 40 H 0.09 1.06 8.08 -51.93 -0.42 0.64 16 41 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 42 H 0.12 2.54 8.06 -52.49 -0.42 2.11 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 45 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -35.86 384.11 -7.51 -43.38 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.66 Total: 7.96 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -0.88 Total: -16.29 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.57 Total: -33.54 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.28 Total: -19.82 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.04 Total: -3.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.86 -7.51 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126303925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.568 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds