Wall clock time and date at job start Tue Mar 31 2020 22:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81402 * 102.99961 * 2 1 4 4 H 1.08999 * 109.46945 * 304.99818 * 3 2 1 5 5 C 1.52997 * 109.46936 * 65.00283 * 3 2 1 6 6 O 1.42896 * 109.47450 * 65.00026 * 5 3 2 7 7 C 1.53002 * 109.46996 * 185.00035 * 3 2 1 8 8 H 1.09006 * 109.47059 * 179.97438 * 7 3 2 9 9 C 1.52997 * 109.47076 * 60.00333 * 7 3 2 10 10 N 1.46494 * 109.47293 * 300.00001 * 7 3 2 11 11 C 1.34780 * 119.99917 * 205.00374 * 10 7 3 12 12 O 1.21282 * 120.00129 * 359.97438 * 11 10 7 13 13 C 1.50702 * 119.99933 * 180.02562 * 11 10 7 14 14 C 1.50701 * 109.47242 * 179.97438 * 13 11 10 15 15 C 1.38299 * 119.93217 * 269.72899 * 14 13 11 16 16 C 1.38093 * 120.06953 * 179.72477 * 15 14 13 17 17 C 1.38883 * 119.92808 * 0.56550 * 16 15 14 18 18 O 1.35754 * 120.06438 * 179.68623 * 17 16 15 19 19 C 1.34826 * 116.99724 * 174.49160 * 18 17 16 20 20 H 1.07998 * 120.00100 * 5.04739 * 19 18 17 21 21 C 1.38654 * 119.99970 * 185.05457 * 19 18 17 22 22 N 1.31557 * 120.00012 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99959 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47263 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47148 * 119.99951 * 23 21 19 26 26 H 1.48504 * 109.47096 * 239.99883 * 23 21 19 27 27 C 1.38871 * 119.86468 * 359.70509 * 17 16 15 28 28 C 1.38101 * 119.93230 * 0.02562 * 27 17 16 29 29 H 1.08999 * 109.47128 * 299.99421 * 1 2 3 30 30 H 1.08994 * 109.47426 * 60.00165 * 1 2 3 31 31 H 1.09006 * 109.46838 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47120 * 185.00294 * 5 3 2 33 33 H 1.09003 * 109.47111 * 304.99658 * 5 3 2 34 34 H 0.96699 * 114.00019 * 179.97438 * 6 5 3 35 35 H 1.08999 * 109.47683 * 59.99717 * 9 7 3 36 36 H 1.09005 * 109.47066 * 179.97438 * 9 7 3 37 37 H 1.09002 * 109.47342 * 299.99668 * 9 7 3 38 38 H 0.97002 * 120.00191 * 24.99733 * 10 7 3 39 39 H 1.09002 * 109.47056 * 59.99417 * 13 11 10 40 40 H 1.09001 * 109.46884 * 299.99904 * 13 11 10 41 41 H 1.08005 * 119.96050 * 359.97425 * 15 14 13 42 42 H 1.07999 * 120.03730 * 180.26989 * 16 15 14 43 43 H 0.97002 * 120.00021 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.03853 * 179.97438 * 27 17 16 45 45 H 1.07997 * 119.96732 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7428 2.4015 1.3074 6 8 2.4730 1.8450 2.4024 7 6 3.7370 1.9412 -0.1257 8 1 3.9821 3.0033 -0.1262 9 6 4.2162 1.3072 -1.4331 10 7 4.3990 1.2872 1.0056 11 6 5.6188 1.7002 1.4031 12 8 6.1686 2.6131 0.8239 13 6 6.3002 1.0271 2.5666 14 6 7.6415 1.6715 2.8047 15 6 8.7660 1.1803 2.1668 16 6 9.9956 1.7721 2.3785 17 6 10.1042 2.8544 3.2420 18 8 11.3126 3.4344 3.4570 19 6 11.3304 4.5489 4.2154 20 1 10.4230 4.8950 4.6881 21 6 12.5134 5.2510 4.3885 22 7 13.6188 4.8292 3.8131 23 14 12.5379 6.7956 5.4388 24 1 11.1756 7.0545 5.9702 25 1 13.4828 6.6106 6.5693 26 1 12.9748 7.9494 4.6121 27 6 8.9741 3.3418 3.8854 28 6 7.7464 2.7491 3.6653 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9075 3.4784 1.2707 33 1 0.6797 2.2009 1.4401 34 1 2.2211 2.2020 3.2650 35 1 3.7236 1.7938 -2.2749 36 1 5.2954 1.4313 -1.5229 37 1 3.9710 0.2451 -1.4332 38 1 3.9595 0.5569 1.4687 39 1 6.4401 -0.0306 2.3434 40 1 5.6830 1.1315 3.4590 41 1 8.6817 0.3353 1.4993 42 1 10.8727 1.3908 1.8767 43 1 14.4464 5.3206 3.9339 44 1 9.0554 4.1831 4.5578 45 1 6.8672 3.1275 4.1656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126303925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:41 Heat of formation + Delta-G solvation = -110.654242 kcal Electronic energy + Delta-G solvation = -26766.439470 eV Core-core repulsion = 22875.191476 eV Total energy + Delta-G solvation = -3891.247994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.09190 -40.44731 -38.62820 -37.96747 -36.19127 -34.38288 -33.32565 -32.22438 -31.75084 -30.47342 -29.21596 -28.12123 -26.94757 -24.54398 -23.61222 -22.90644 -21.89123 -21.18339 -19.82607 -18.84729 -18.54545 -17.93985 -17.63404 -16.56425 -16.53923 -16.25579 -15.98228 -15.75422 -15.67569 -15.54693 -15.44018 -15.03046 -14.59055 -14.54766 -14.35564 -14.15725 -14.06169 -13.76072 -13.66081 -13.56065 -13.32912 -12.97025 -12.81151 -12.71585 -12.48785 -12.38073 -12.24805 -12.20655 -12.09007 -11.89013 -11.15956 -11.10274 -10.84459 -10.67011 -10.58602 -9.80392 -9.74081 -8.87228 -8.54026 -8.46425 -6.14411 0.63447 0.66706 0.71429 1.33936 1.43057 1.53097 1.65442 1.88957 2.18131 2.40933 2.87659 3.19399 3.26268 3.54185 3.57624 3.91679 3.94639 4.08019 4.20483 4.24501 4.32640 4.33930 4.40111 4.44882 4.47832 4.53857 4.55934 4.62228 4.62602 4.75900 4.79912 4.83393 4.97812 4.98954 5.12002 5.16529 5.29409 5.33020 5.58883 5.71340 5.73397 5.81818 6.04206 6.25382 6.81478 6.97202 6.98139 7.53995 7.80193 8.77433 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.002106 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.494900 B =13289.094451 C =13676.182886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.264 6.264 3 C -0.062 4.062 4 H 0.127 0.873 5 C 0.084 3.916 6 O -0.569 6.569 7 C 0.166 3.834 8 H 0.074 0.926 9 C -0.162 4.162 10 N -0.689 5.689 11 C 0.513 3.487 12 O -0.588 6.588 13 C -0.077 4.077 14 C -0.140 4.140 15 C -0.060 4.060 16 C -0.206 4.206 17 C 0.111 3.889 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.027 4.027 22 N -0.922 5.922 23 Si 1.021 2.979 24 H -0.252 1.252 25 H -0.266 1.266 26 H -0.269 1.269 27 C -0.242 4.242 28 C -0.059 4.059 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.393 0.607 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.417 0.583 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.143 0.857 42 H 0.111 0.889 43 H 0.272 0.728 44 H 0.118 0.882 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.638 -9.245 -5.104 35.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.038 6.038 3 C -0.191 4.191 4 H 0.145 0.855 5 C 0.004 3.996 6 O -0.376 6.376 7 C 0.060 3.940 8 H 0.092 0.908 9 C -0.220 4.220 10 N -0.343 5.343 11 C 0.300 3.700 12 O -0.468 6.468 13 C -0.116 4.116 14 C -0.141 4.141 15 C -0.078 4.078 16 C -0.225 4.225 17 C 0.061 3.939 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.117 0.883 21 C -0.223 4.223 22 N -0.561 5.561 23 Si 0.840 3.160 24 H -0.175 1.175 25 H -0.190 1.190 26 H -0.194 1.194 27 C -0.262 4.262 28 C -0.077 4.077 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.243 0.757 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.256 0.744 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.161 0.839 42 H 0.129 0.871 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -31.906 -9.841 -6.087 33.940 hybrid contribution -0.539 1.907 0.808 2.140 sum -32.446 -7.934 -5.279 33.816 Atomic orbital electron populations 1.23513 0.92291 1.07308 1.05713 1.87076 1.09396 1.09692 1.97663 1.23732 0.98104 0.95794 1.01423 0.85546 1.22194 0.95108 0.96336 0.85965 1.86467 1.64869 1.68259 1.18040 1.20521 0.88919 0.97723 0.86835 0.90782 1.22202 1.00739 1.02257 0.96828 1.45891 1.17325 1.38066 1.33063 1.20998 0.81381 0.82789 0.84783 1.90725 1.65957 1.31993 1.58132 1.20472 0.92491 1.00840 0.97813 1.19258 0.94775 0.99050 1.01032 1.20856 0.90633 0.98887 0.97448 1.20420 0.99390 0.99247 1.03432 1.19913 0.86037 0.93600 0.94359 1.83938 1.26033 1.39586 1.64573 1.21862 0.97906 1.01602 1.27501 0.88258 1.26640 0.93559 1.02762 0.99379 1.70201 1.00478 1.41259 1.44144 0.84503 0.79553 0.74928 0.77005 1.17508 1.19036 1.19399 1.21219 0.93481 1.04940 1.06524 1.20907 0.95835 0.94232 0.96741 0.89684 0.89497 0.87416 0.92692 0.91678 0.75735 0.90205 0.94413 0.90876 0.74378 0.86159 0.85729 0.83920 0.87060 0.91867 0.86436 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.45 113.37 1.18 0.52 16 2 S -0.26 -3.10 18.97 -56.49 -1.07 -4.17 16 3 C -0.06 -0.68 2.58 30.59 0.08 -0.61 16 4 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 5 C 0.08 0.73 6.58 71.98 0.47 1.20 16 6 O -0.57 -5.80 10.35 -148.98 -1.54 -7.35 16 7 C 0.17 3.03 2.31 44.99 0.10 3.14 16 8 H 0.07 1.69 7.58 -2.38 -0.02 1.68 16 9 C -0.16 -3.02 9.25 71.98 0.67 -2.36 16 10 N -0.69 -13.61 3.42 -442.53 -1.51 -15.12 16 11 C 0.51 13.92 7.79 87.66 0.68 14.61 16 12 O -0.59 -22.41 15.70 -3.04 -0.05 -22.46 16 13 C -0.08 -1.80 5.83 29.10 0.17 -1.63 16 14 C -0.14 -4.81 4.38 -19.83 -0.09 -4.90 16 15 C -0.06 -2.28 9.69 22.25 0.22 -2.06 16 16 C -0.21 -9.68 9.99 22.39 0.22 -9.46 16 17 C 0.11 6.00 6.65 22.58 0.15 6.15 16 18 O -0.23 -14.99 9.76 -22.74 -0.22 -15.21 16 19 C -0.41 -25.32 9.49 67.92 0.64 -24.68 16 20 H 0.10 5.64 5.20 -2.91 -0.02 5.62 16 21 C -0.03 -1.57 5.49 84.83 0.47 -1.11 16 22 N -0.92 -58.83 13.67 21.61 0.30 -58.54 16 23 Si 1.02 44.73 29.55 68.60 2.03 46.76 16 24 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 C -0.24 -11.51 9.17 22.39 0.21 -11.31 16 28 C -0.06 -2.25 9.69 22.25 0.22 -2.03 16 29 H 0.08 0.33 7.02 -2.39 -0.02 0.31 16 30 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.32 6.72 -2.39 -0.02 0.30 16 34 H 0.39 1.38 9.12 -74.06 -0.68 0.70 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.07 1.30 6.92 -2.39 -0.02 1.29 16 38 H 0.42 6.98 6.34 -92.71 -0.59 6.40 16 39 H 0.12 2.17 8.08 -2.39 -0.02 2.15 16 40 H 0.12 2.20 8.08 -2.39 -0.02 2.18 16 41 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 42 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 43 H 0.27 15.82 8.31 -92.71 -0.77 15.04 16 44 H 0.12 5.63 5.64 -2.91 -0.02 5.61 16 45 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -84.89 384.11 3.08 -81.81 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.24 Total: 28.82 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: 5.39 Total: -34.53 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -1.22 Total: -73.66 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.81 Total: -45.02 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -1.07 Total: -4.17 kcal Total: -84.89 3.08 -81.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126303925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.842 kcal (2) G-P(sol) polarization free energy of solvation -84.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds