Wall clock time and date at job start Tue Mar 31 2020 22:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47283 * 2 1 4 4 C 1.46503 * 119.99900 * 270.27600 * 3 2 1 5 5 C 1.52995 * 109.47004 * 280.26554 * 4 3 2 6 6 C 1.34773 * 119.99937 * 89.99899 * 3 2 1 7 7 O 1.21556 * 120.00276 * 357.11844 * 6 3 2 8 8 C 1.47853 * 120.00078 * 177.11995 * 6 3 2 9 9 C 1.39577 * 120.13966 * 322.27568 * 8 6 3 10 10 C 1.37959 * 119.84770 * 179.74630 * 9 8 6 11 11 C 1.38359 * 120.14720 * 0.53061 * 10 9 8 12 12 S 1.76194 * 119.85318 * 179.71954 * 11 10 9 13 13 O 1.42096 * 104.28071 * 26.09216 * 12 11 10 14 14 O 1.42105 * 104.27948 * 153.95053 * 12 11 10 15 15 C 1.81403 * 104.45317 * 270.02189 * 12 11 10 16 16 C 1.52993 * 109.47217 * 180.02562 * 15 12 11 17 17 C 1.50703 * 109.47237 * 180.02562 * 16 15 12 18 18 H 1.07999 * 119.99574 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00260 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99897 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00233 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47069 * 89.99992 * 21 19 17 23 23 H 1.48497 * 109.47373 * 210.00302 * 21 19 17 24 24 H 1.48499 * 109.46666 * 330.00043 * 21 19 17 25 25 C 1.38358 * 120.29210 * 359.74361 * 11 10 9 26 26 C 1.37962 * 120.14250 * 359.97438 * 25 11 10 27 27 H 1.08998 * 109.47018 * 60.00172 * 1 2 3 28 28 H 1.08997 * 109.46765 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46717 * 299.99955 * 1 2 3 30 30 H 1.08998 * 109.47438 * 239.99852 * 2 1 3 31 31 H 1.09008 * 109.47131 * 120.00018 * 2 1 3 32 32 H 1.08995 * 109.46981 * 40.26479 * 4 3 2 33 33 H 1.08997 * 109.47093 * 160.26594 * 4 3 2 34 34 H 1.08999 * 109.47090 * 80.62968 * 5 4 3 35 35 H 1.09003 * 109.47108 * 200.63346 * 5 4 3 36 36 H 1.09006 * 109.47288 * 320.62848 * 5 4 3 37 37 H 1.08003 * 120.07648 * 359.97438 * 9 8 6 38 38 H 1.08002 * 119.92527 * 180.27087 * 10 9 8 39 39 H 1.09008 * 109.46737 * 300.00319 * 15 12 11 40 40 H 1.09000 * 109.47146 * 59.99940 * 15 12 11 41 41 H 1.09000 * 109.47604 * 299.99904 * 16 15 12 42 42 H 1.09000 * 109.47312 * 59.99795 * 16 15 12 43 43 H 0.97004 * 120.00072 * 179.97438 * 20 19 17 44 44 H 1.07996 * 119.92827 * 180.02562 * 25 11 10 45 45 H 1.08001 * 120.06714 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2568 2.0738 -1.2688 5 6 3.6032 1.6321 -1.8457 6 6 2.2430 2.0165 1.1672 7 8 1.9909 1.4623 2.2192 8 6 2.7961 3.3877 1.1680 9 6 3.7654 3.7530 0.2325 10 6 4.2735 5.0356 0.2354 11 6 3.8323 5.9557 1.1698 12 16 4.4920 7.5895 1.1712 13 8 4.9067 7.8011 -0.1714 14 8 3.4661 8.3812 1.7545 15 6 5.9292 7.4966 2.2741 16 6 6.5960 8.8709 2.3598 17 6 7.7903 8.7936 3.2756 18 1 8.0477 7.8579 3.7494 19 6 8.5538 9.9176 3.5093 20 7 9.5958 9.8502 4.3089 21 14 8.1082 11.5363 2.6903 22 1 7.1747 12.2923 3.5634 23 1 9.3400 12.3365 2.4724 24 1 7.4555 11.2668 1.3839 25 6 2.8758 5.5983 2.1035 26 6 2.3553 4.3207 2.1078 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.4616 1.8273 -1.9722 33 1 2.2703 3.1503 -1.0981 34 1 3.4854 0.6726 -2.3494 35 1 3.9542 2.3768 -2.5601 36 1 4.3292 1.5322 -1.0388 37 1 4.1142 3.0342 -0.4943 38 1 5.0205 5.3208 -0.4906 39 1 5.6050 7.1878 3.2680 40 1 6.6415 6.7705 1.8823 41 1 6.9200 9.1802 1.3661 42 1 5.8834 9.5967 2.7518 43 1 10.1331 10.6409 4.4731 44 1 2.5354 6.3213 2.8299 45 1 1.6090 4.0429 2.8374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129777321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:35 Heat of formation + Delta-G solvation = -70.612699 kcal Electronic energy + Delta-G solvation = -27004.679235 eV Core-core repulsion = 23115.167573 eV Total energy + Delta-G solvation = -3889.511662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97091 -38.71037 -36.82645 -36.75734 -35.64669 -34.00498 -33.22716 -31.62594 -31.51757 -31.04798 -29.98456 -26.08235 -25.12072 -24.12300 -23.26842 -22.72813 -21.23239 -19.76994 -18.93804 -18.07111 -17.69148 -17.11126 -16.83594 -15.97759 -15.69076 -15.47861 -15.45736 -14.97314 -14.79246 -14.34431 -14.22894 -14.10197 -13.69666 -13.55703 -13.35838 -13.18751 -13.01372 -12.93130 -12.80765 -12.50220 -12.19311 -11.94800 -11.78511 -11.75516 -11.67572 -11.44857 -11.35437 -11.29233 -11.25172 -10.87833 -10.48201 -10.32839 -10.13125 -9.74444 -9.53408 -9.34470 -9.29080 -9.19750 -8.68600 -6.18618 -4.20627 0.13242 0.46122 1.02178 2.27160 2.46613 3.12166 3.25314 3.27230 3.32951 3.36215 3.95201 4.12649 4.22282 4.33719 4.35595 4.54947 4.59112 4.63187 4.64933 4.84268 4.86148 4.96839 5.02596 5.09186 5.14011 5.14623 5.26166 5.31221 5.35945 5.44474 5.46647 5.50247 5.61593 5.68359 5.74570 5.76293 5.86039 5.91551 6.08593 6.20387 6.47814 6.76278 6.85603 6.88752 7.50772 7.69408 8.33387 8.82405 9.40323 10.93557 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023857 B = 0.002421 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.397416 B =11560.761852 C =11656.394798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.607 5.607 4 C 0.089 3.911 5 C -0.182 4.182 6 C 0.558 3.442 7 O -0.527 6.527 8 C -0.088 4.088 9 C -0.131 4.131 10 C -0.031 4.031 11 C -0.633 4.633 12 S 2.468 3.532 13 O -0.943 6.943 14 O -0.943 6.943 15 C -0.556 4.556 16 C -0.009 4.009 17 C -0.521 4.521 18 H 0.079 0.921 19 C 0.072 3.928 20 N -0.894 5.894 21 Si 0.869 3.131 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.261 1.261 25 C -0.028 4.028 26 C -0.088 4.088 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.035 0.965 42 H 0.031 0.969 43 H 0.267 0.733 44 H 0.150 0.850 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.253 -18.809 -12.774 27.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.340 5.340 4 C -0.033 4.033 5 C -0.240 4.240 6 C 0.346 3.654 7 O -0.403 6.403 8 C -0.091 4.091 9 C -0.149 4.149 10 C -0.050 4.050 11 C -0.718 4.718 12 S 2.651 3.349 13 O -0.940 6.940 14 O -0.940 6.940 15 C -0.689 4.689 16 C -0.048 4.048 17 C -0.560 4.560 18 H 0.097 0.903 19 C -0.131 4.131 20 N -0.532 5.532 21 Si 0.695 3.305 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.185 1.185 25 C -0.047 4.047 26 C -0.107 4.107 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.168 0.832 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.638 -18.374 -12.630 27.820 hybrid contribution 0.064 0.004 -0.017 0.066 sum -16.574 -18.371 -12.647 27.787 Atomic orbital electron populations 1.22128 0.95673 1.02381 1.02478 1.21456 0.94602 0.81667 1.03358 1.47966 1.65785 1.14399 1.05881 1.21957 0.97912 0.98542 0.84937 1.22405 0.97128 1.02742 1.01739 1.18451 0.77670 0.85640 0.83612 1.90804 1.51383 1.67235 1.30887 1.20143 0.98214 0.93653 0.97084 1.22123 0.96792 0.97484 0.98528 1.20980 0.96714 0.91933 0.95374 1.31189 1.10485 1.25250 1.04847 1.06487 0.77702 0.73859 0.76886 1.93531 1.83510 1.83643 1.33349 1.93538 1.55327 1.65793 1.79347 1.30031 1.14921 1.09858 1.14111 1.19482 0.97626 0.88171 0.99524 1.20819 1.09242 0.98365 1.27542 0.90294 1.24983 0.94579 0.98953 0.94577 1.69880 1.17073 1.30085 1.36143 0.86925 0.78585 0.83951 0.81000 1.19631 1.20760 1.18544 1.21009 0.92139 0.96154 0.95391 1.21311 0.99771 0.92474 0.97163 0.92540 0.91421 0.92072 0.90275 0.89690 0.90125 0.88800 0.91706 0.90506 0.91296 0.83006 0.83296 0.85061 0.85072 0.94648 0.95082 0.92326 0.83185 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.24 37.16 0.38 -0.67 16 2 C 0.11 0.75 6.09 -4.04 -0.02 0.73 16 3 N -0.61 -4.99 2.47 -174.80 -0.43 -5.42 16 4 C 0.09 0.52 5.57 -4.04 -0.02 0.50 16 5 C -0.18 -0.84 8.61 37.16 0.32 -0.52 16 6 C 0.56 6.40 7.35 -12.33 -0.09 6.31 16 7 O -0.53 -7.71 16.48 5.32 0.09 -7.62 16 8 C -0.09 -1.00 5.15 -104.97 -0.54 -1.54 16 9 C -0.13 -1.31 7.45 -39.18 -0.29 -1.60 16 10 C -0.03 -0.36 9.45 -39.64 -0.37 -0.73 16 11 C -0.63 -8.34 5.66 -39.49 -0.22 -8.56 16 12 S 2.47 39.44 5.15 -107.50 -0.55 38.89 16 13 O -0.94 -16.97 17.11 -57.54 -0.98 -17.96 16 14 O -0.94 -17.25 17.11 -57.54 -0.98 -18.24 16 15 C -0.56 -9.56 5.92 37.15 0.22 -9.34 16 16 C -0.01 -0.20 4.05 -27.88 -0.11 -0.32 16 17 C -0.52 -14.14 9.66 -34.44 -0.33 -14.47 16 18 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 19 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 20 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 21 Si 0.87 20.96 27.47 -169.99 -4.67 16.30 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 25 C -0.03 -0.35 9.45 -39.64 -0.37 -0.72 16 26 C -0.09 -1.03 9.62 -39.19 -0.38 -1.41 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.08 0.70 7.46 -51.92 -0.39 0.31 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.62 5.21 -51.93 -0.27 0.35 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.39 6.72 -51.93 -0.35 0.04 16 37 H 0.15 1.13 3.24 -52.48 -0.17 0.96 16 38 H 0.15 1.48 7.56 -52.49 -0.40 1.08 16 39 H 0.13 2.03 8.14 -51.92 -0.42 1.61 16 40 H 0.13 2.00 8.14 -51.92 -0.42 1.58 16 41 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 42 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.15 1.67 7.56 -52.49 -0.40 1.27 16 45 H 0.14 1.47 8.04 -52.49 -0.42 1.05 16 LS Contribution 380.32 15.07 5.73 5.73 Total: -1.00 -35.71 380.32 -9.52 -45.23 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.55 Total: -0.65 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: -1.94 Total: -30.42 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.34 Total: -31.26 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -1.88 Total: -43.82 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.30 kcal Atomic # 16 Polarization: 39.44 SS G_CDS: -0.55 Total: 38.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.71 -9.52 -45.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129777321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.379 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds