Wall clock time and date at job start Tue Mar 31 2020 22:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47283 * 2 1 4 4 C 1.46503 * 119.99900 * 270.27600 * 3 2 1 5 5 C 1.52995 * 109.47004 * 280.26554 * 4 3 2 6 6 C 1.34773 * 119.99937 * 89.99899 * 3 2 1 7 7 O 1.21556 * 120.00276 * 357.11844 * 6 3 2 8 8 C 1.47853 * 120.00078 * 177.11995 * 6 3 2 9 9 C 1.39577 * 120.13966 * 322.27568 * 8 6 3 10 10 C 1.37959 * 119.84770 * 179.74630 * 9 8 6 11 11 C 1.38359 * 120.14720 * 0.53061 * 10 9 8 12 12 S 1.76194 * 119.85318 * 179.71954 * 11 10 9 13 13 O 1.42096 * 104.28071 * 26.09216 * 12 11 10 14 14 O 1.42105 * 104.27948 * 153.95053 * 12 11 10 15 15 C 1.81403 * 104.45317 * 270.02189 * 12 11 10 16 16 C 1.52993 * 109.47217 * 180.02562 * 15 12 11 17 17 C 1.50703 * 109.47237 * 180.02562 * 16 15 12 18 18 H 1.07999 * 119.99574 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00260 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99897 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00233 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47069 * 89.99992 * 21 19 17 23 23 H 1.48497 * 109.47373 * 210.00302 * 21 19 17 24 24 H 1.48499 * 109.46666 * 330.00043 * 21 19 17 25 25 C 1.38358 * 120.29210 * 359.74361 * 11 10 9 26 26 C 1.37962 * 120.14250 * 359.97438 * 25 11 10 27 27 H 1.08998 * 109.47018 * 60.00172 * 1 2 3 28 28 H 1.08997 * 109.46765 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46717 * 299.99955 * 1 2 3 30 30 H 1.08998 * 109.47438 * 239.99852 * 2 1 3 31 31 H 1.09008 * 109.47131 * 120.00018 * 2 1 3 32 32 H 1.08995 * 109.46981 * 40.26479 * 4 3 2 33 33 H 1.08997 * 109.47093 * 160.26594 * 4 3 2 34 34 H 1.08999 * 109.47090 * 80.62968 * 5 4 3 35 35 H 1.09003 * 109.47108 * 200.63346 * 5 4 3 36 36 H 1.09006 * 109.47288 * 320.62848 * 5 4 3 37 37 H 1.08003 * 120.07648 * 359.97438 * 9 8 6 38 38 H 1.08002 * 119.92527 * 180.27087 * 10 9 8 39 39 H 1.09008 * 109.46737 * 300.00319 * 15 12 11 40 40 H 1.09000 * 109.47146 * 59.99940 * 15 12 11 41 41 H 1.09000 * 109.47604 * 299.99904 * 16 15 12 42 42 H 1.09000 * 109.47312 * 59.99795 * 16 15 12 43 43 H 0.97004 * 120.00072 * 179.97438 * 20 19 17 44 44 H 1.07996 * 119.92827 * 180.02562 * 25 11 10 45 45 H 1.08001 * 120.06714 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2568 2.0738 -1.2688 5 6 3.6032 1.6321 -1.8457 6 6 2.2430 2.0165 1.1672 7 8 1.9909 1.4623 2.2192 8 6 2.7961 3.3877 1.1680 9 6 3.7654 3.7530 0.2325 10 6 4.2735 5.0356 0.2354 11 6 3.8323 5.9557 1.1698 12 16 4.4920 7.5895 1.1712 13 8 4.9067 7.8011 -0.1714 14 8 3.4661 8.3812 1.7545 15 6 5.9292 7.4966 2.2741 16 6 6.5960 8.8709 2.3598 17 6 7.7903 8.7936 3.2756 18 1 8.0477 7.8579 3.7494 19 6 8.5538 9.9176 3.5093 20 7 9.5958 9.8502 4.3089 21 14 8.1082 11.5363 2.6903 22 1 7.1747 12.2923 3.5634 23 1 9.3400 12.3365 2.4724 24 1 7.4555 11.2668 1.3839 25 6 2.8758 5.5983 2.1035 26 6 2.3553 4.3207 2.1078 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.4616 1.8273 -1.9722 33 1 2.2703 3.1503 -1.0981 34 1 3.4854 0.6726 -2.3494 35 1 3.9542 2.3768 -2.5601 36 1 4.3292 1.5322 -1.0388 37 1 4.1142 3.0342 -0.4943 38 1 5.0205 5.3208 -0.4906 39 1 5.6050 7.1878 3.2680 40 1 6.6415 6.7705 1.8823 41 1 6.9200 9.1802 1.3661 42 1 5.8834 9.5967 2.7518 43 1 10.1331 10.6409 4.4731 44 1 2.5354 6.3213 2.8299 45 1 1.6090 4.0429 2.8374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129777321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:35 Heat of formation + Delta-G solvation = -94.617628 kcal Electronic energy + Delta-G solvation = -27005.720167 eV Core-core repulsion = 23115.167573 eV Total energy + Delta-G solvation = -3890.552594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78072 -39.59385 -38.17057 -37.51444 -37.01751 -35.87635 -33.86707 -33.45953 -32.48329 -31.82320 -30.58748 -27.89766 -25.99111 -24.60059 -24.12999 -23.55455 -22.96622 -20.51867 -20.13943 -19.41948 -18.78346 -18.38539 -17.78211 -17.06813 -16.92093 -16.54880 -16.38309 -16.28487 -15.85787 -15.56121 -15.22755 -15.02751 -14.79316 -14.69390 -14.34928 -14.14993 -13.98838 -13.77680 -13.68844 -13.48000 -13.18963 -13.09830 -13.04174 -13.00002 -12.93819 -12.70541 -12.30411 -12.24558 -12.16094 -11.98577 -11.94183 -11.82844 -11.65515 -11.29562 -11.05647 -10.81609 -10.48189 -10.16764 -9.86733 -8.33584 -6.39643 -1.01090 -0.64313 0.13437 1.35897 1.37494 1.38937 1.47460 1.77793 1.93299 2.32572 2.33178 2.85836 3.00651 3.11495 3.20845 3.62476 3.73378 3.92672 3.94670 4.02074 4.10618 4.13071 4.17125 4.29146 4.36704 4.41184 4.44436 4.52723 4.60033 4.70463 4.77354 4.82577 4.89977 4.91329 4.96583 4.99390 5.05541 5.11252 5.13097 5.23671 5.33904 5.47960 5.49736 5.58613 6.15178 6.19078 6.67071 6.89067 7.24676 8.81861 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023857 B = 0.002421 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.397416 B =11560.761852 C =11656.394798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.082 3.918 5 C -0.182 4.182 6 C 0.552 3.448 7 O -0.569 6.569 8 C -0.091 4.091 9 C -0.117 4.117 10 C -0.035 4.035 11 C -0.637 4.637 12 S 2.498 3.502 13 O -0.962 6.962 14 O -0.968 6.968 15 C -0.565 4.565 16 C -0.020 4.020 17 C -0.526 4.526 18 H 0.049 0.951 19 C 0.011 3.989 20 N -0.941 5.941 21 Si 0.926 3.074 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.244 1.244 25 C -0.036 4.036 26 C -0.096 4.096 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.033 0.967 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.181 0.819 38 H 0.167 0.833 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.039 0.961 42 H 0.035 0.965 43 H 0.269 0.731 44 H 0.158 0.842 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.514 -19.829 -15.521 30.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.329 5.329 4 C -0.040 4.040 5 C -0.239 4.239 6 C 0.341 3.659 7 O -0.449 6.449 8 C -0.094 4.094 9 C -0.136 4.136 10 C -0.054 4.054 11 C -0.725 4.725 12 S 2.683 3.317 13 O -0.959 6.959 14 O -0.965 6.965 15 C -0.697 4.697 16 C -0.059 4.059 17 C -0.565 4.565 18 H 0.067 0.933 19 C -0.187 4.187 20 N -0.581 5.581 21 Si 0.749 3.251 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.168 1.168 25 C -0.054 4.054 26 C -0.115 4.115 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.052 0.948 30 H 0.129 0.871 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.197 0.803 38 H 0.185 0.815 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.175 0.825 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.882 -19.363 -15.415 30.534 hybrid contribution 0.393 0.109 0.801 0.899 sum -17.489 -19.254 -14.614 29.835 Atomic orbital electron populations 1.22088 0.95220 1.03218 1.01638 1.21633 0.94959 0.80872 1.04020 1.48105 1.64156 1.14827 1.05807 1.22202 0.99681 0.97995 0.84077 1.22401 0.95812 1.04023 1.01691 1.18542 0.77682 0.85651 0.84038 1.90784 1.53505 1.68097 1.32499 1.20331 0.98300 0.93657 0.97109 1.22394 0.95553 0.97355 0.98280 1.21279 0.96883 0.92054 0.95150 1.30659 1.11607 1.23650 1.06575 1.05250 0.76460 0.74432 0.75592 1.93499 1.83744 1.84696 1.33996 1.93503 1.55665 1.67686 1.79650 1.30026 1.16367 1.07264 1.16036 1.19445 0.96405 0.91591 0.98436 1.21164 1.10634 0.97144 1.27603 0.93273 1.25901 0.94564 1.02906 0.95349 1.70018 1.18616 1.31290 1.38183 0.86006 0.78774 0.79534 0.80822 1.18672 1.20168 1.16751 1.21136 0.92145 0.96636 0.95518 1.21434 1.00091 0.92372 0.97622 0.91390 0.89836 0.94769 0.87091 0.91496 0.87861 0.89481 0.90291 0.89097 0.92251 0.80270 0.81545 0.83817 0.83410 0.94249 0.94667 0.92183 0.82482 0.83684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 10.24 71.98 0.74 -1.03 16 2 C 0.11 1.23 6.09 86.38 0.53 1.75 16 3 N -0.60 -8.61 2.47 -825.22 -2.04 -10.65 16 4 C 0.08 0.69 5.57 86.38 0.48 1.17 16 5 C -0.18 -0.99 8.61 71.98 0.62 -0.37 16 6 C 0.55 12.17 7.35 86.79 0.64 12.80 16 7 O -0.57 -16.80 16.48 -3.89 -0.06 -16.86 16 8 C -0.09 -1.93 5.15 -20.09 -0.10 -2.04 16 9 C -0.12 -2.07 7.45 22.53 0.17 -1.90 16 10 C -0.04 -0.72 9.45 22.23 0.21 -0.51 16 11 C -0.64 -15.77 5.66 22.33 0.13 -15.64 16 12 S 2.50 76.66 5.15 -56.49 -0.29 76.37 16 13 O -0.96 -33.01 17.11 -127.65 -2.18 -35.20 16 14 O -0.97 -34.51 17.11 -127.65 -2.18 -36.70 16 15 C -0.57 -19.03 5.92 71.98 0.43 -18.61 16 16 C -0.02 -0.90 4.05 29.85 0.12 -0.78 16 17 C -0.53 -29.05 9.66 25.60 0.25 -28.80 16 18 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 19 C 0.01 0.64 5.47 84.65 0.46 1.10 16 20 N -0.94 -57.40 13.96 21.45 0.30 -57.10 16 21 Si 0.93 42.88 27.47 68.60 1.88 44.76 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.24 -10.53 6.54 99.48 0.65 -9.88 16 25 C -0.04 -0.84 9.45 22.23 0.21 -0.63 16 26 C -0.10 -2.17 9.62 22.53 0.22 -1.95 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.11 0.59 8.07 -2.39 -0.02 0.57 16 31 H 0.07 1.05 7.46 -2.38 -0.02 1.03 16 32 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 0.88 5.21 -2.39 -0.01 0.87 16 34 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.09 0.29 8.14 -2.39 -0.02 0.28 16 36 H 0.06 0.47 6.72 -2.38 -0.02 0.45 16 37 H 0.18 2.09 3.24 -2.91 -0.01 2.08 16 38 H 0.17 2.81 7.56 -2.91 -0.02 2.79 16 39 H 0.14 4.40 8.14 -2.39 -0.02 4.38 16 40 H 0.15 4.39 8.14 -2.39 -0.02 4.37 16 41 H 0.04 1.72 7.20 -2.39 -0.02 1.70 16 42 H 0.04 1.53 7.57 -2.39 -0.02 1.52 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.16 3.40 7.56 -2.91 -0.02 3.38 16 45 H 0.15 3.05 8.04 -2.91 -0.02 3.03 16 Total: -1.00 -78.60 380.32 1.44 -77.15 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.94 Total: 13.65 kcal Atomic # 6 Polarization: -60.52 SS G_CDS: 5.09 Total: -55.43 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -1.74 Total: -67.75 kcal Atomic # 8 Polarization: -84.32 SS G_CDS: -4.43 Total: -88.75 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.76 kcal Atomic # 16 Polarization: 76.66 SS G_CDS: -0.29 Total: 76.37 kcal Total: -78.60 1.44 -77.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129777321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.465 kcal (2) G-P(sol) polarization free energy of solvation -78.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds