Wall clock time and date at job start Tue Mar 31 2020 23:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35906 * 116.99582 * 2 1 4 4 C 1.38638 * 119.95097 * 359.93200 * 3 2 1 5 5 C 1.38125 * 119.87152 * 180.02562 * 4 3 2 6 6 C 1.38176 * 119.99607 * 0.02998 * 5 4 3 7 7 C 1.38502 * 120.33130 * 359.97438 * 6 5 4 8 8 C 1.38167 * 119.88175 * 0.02725 * 7 6 5 9 9 C 1.51366 * 109.77275 * 179.97438 * 8 7 6 10 10 C 1.54352 * 105.16787 * 342.82126 * 9 8 7 11 11 C 1.51376 * 130.35825 * 179.97438 * 7 6 5 12 12 H 1.08994 * 110.38798 * 316.19502 * 11 7 6 13 13 N 1.46497 * 110.30572 * 78.30664 * 11 7 6 14 14 S 1.65594 * 120.00126 * 230.40088 * 13 11 7 15 15 O 1.42104 * 104.27704 * 308.19075 * 14 13 11 16 16 O 1.42101 * 104.27853 * 180.33758 * 14 13 11 17 17 C 1.81395 * 104.45080 * 64.26444 * 14 13 11 18 18 C 1.53003 * 109.47253 * 176.40037 * 17 14 13 19 19 C 1.52998 * 109.47342 * 179.97438 * 18 17 14 20 20 C 1.50691 * 109.47269 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00188 * 0.02562 * 20 19 18 22 22 C 1.37884 * 120.00042 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00145 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99901 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.46993 * 269.99798 * 24 22 20 26 26 H 1.48502 * 109.47153 * 30.00158 * 24 22 20 27 27 H 1.48507 * 109.46896 * 149.99688 * 24 22 20 28 28 H 1.08997 * 109.47342 * 60.00271 * 1 2 3 29 29 H 1.09002 * 109.46708 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46926 * 300.00055 * 1 2 3 31 31 H 1.07997 * 120.06649 * 0.09842 * 4 3 2 32 32 H 1.08001 * 119.99873 * 180.02562 * 5 4 3 33 33 H 1.07997 * 119.83435 * 179.97438 * 6 5 4 34 34 H 1.09007 * 110.29839 * 223.90088 * 9 8 7 35 35 H 1.08996 * 110.30209 * 101.75051 * 9 8 7 36 36 H 1.09003 * 110.81953 * 268.11742 * 10 9 8 37 37 H 1.08990 * 110.99332 * 144.64115 * 10 9 8 38 38 H 0.97002 * 119.99660 * 50.39870 * 13 11 7 39 39 H 1.09003 * 109.47063 * 56.40301 * 17 14 13 40 40 H 1.09002 * 109.47078 * 296.40104 * 17 14 13 41 41 H 1.09003 * 109.46870 * 60.00146 * 18 17 14 42 42 H 1.08994 * 109.47350 * 300.00218 * 18 17 14 43 43 H 1.09004 * 109.46491 * 59.99926 * 19 18 17 44 44 H 1.08994 * 109.47330 * 300.00541 * 19 18 17 45 45 H 0.97007 * 119.99601 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2898 2.3730 -0.0014 5 6 1.9185 3.6029 -0.0020 6 6 3.2984 3.6733 -0.0017 7 6 4.0579 2.5150 -0.0004 8 6 3.4335 1.2825 0.0001 9 6 4.4727 0.1820 0.0010 10 6 5.7849 0.8654 -0.4391 11 6 5.5600 2.3278 -0.0003 12 1 6.0279 3.0116 -0.7084 13 7 6.0991 2.5429 1.3447 14 16 7.3803 3.5677 1.5691 15 8 8.3554 3.1189 0.6379 16 8 7.6266 3.5198 2.9678 17 6 6.7454 5.1979 1.0901 18 6 7.8203 6.2576 1.3401 19 6 7.2850 7.6325 0.9354 20 6 8.3439 8.6761 1.1811 21 1 9.3030 8.3876 1.5851 22 6 8.0884 9.9995 0.8902 23 7 6.9206 10.3509 0.3978 24 14 9.4009 11.2932 1.1954 25 1 9.2588 11.8267 2.5739 26 1 10.7449 10.6818 1.0372 27 1 9.2422 12.3996 0.2176 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2113 2.3167 -0.0009 32 1 1.3314 4.5094 -0.0027 33 1 3.7873 4.6363 -0.0025 34 1 4.1970 -0.5991 -0.7076 35 1 4.5808 -0.2354 1.0020 36 1 5.9119 0.8006 -1.5198 37 1 6.6423 0.4332 0.0768 38 1 5.7055 2.0850 2.1039 39 1 5.8604 5.4314 1.6820 40 1 6.4830 5.1891 0.0321 41 1 8.7053 6.0241 0.7482 42 1 8.0827 6.2664 2.3979 43 1 6.3998 7.8662 1.5271 44 1 7.0229 7.6234 -0.1225 45 1 6.2392 9.6789 0.2389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131962771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:24 Heat of formation + Delta-G solvation = -102.977539 kcal Electronic energy + Delta-G solvation = -27181.905435 eV Core-core repulsion = 23290.990328 eV Total energy + Delta-G solvation = -3890.915107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.94687 -38.85485 -36.96121 -36.19358 -35.80157 -34.93967 -33.34425 -32.29922 -30.42688 -29.49795 -27.49486 -27.45753 -26.61492 -23.47960 -22.72336 -21.36172 -21.12433 -21.01646 -19.33100 -18.28334 -17.61216 -16.92555 -16.64543 -16.37146 -16.08057 -15.91629 -15.69099 -15.37266 -14.66467 -14.52994 -14.33277 -14.10144 -13.76524 -13.34289 -13.19931 -13.05048 -12.56287 -12.42902 -12.20116 -12.06816 -12.06386 -11.92960 -11.86562 -11.73858 -11.54304 -11.47935 -11.28930 -11.25609 -11.16053 -10.81695 -10.79358 -10.15116 -10.10497 -9.97354 -9.53066 -9.01816 -8.59398 -8.41554 -8.37397 -6.41592 -4.11312 0.35836 0.95940 1.15684 2.76329 2.94558 3.42857 3.46231 3.46429 3.62142 3.85555 3.99520 4.23537 4.34843 4.51285 4.56993 4.59865 4.70278 4.75641 4.81001 4.88293 4.94574 5.03390 5.06290 5.11210 5.17616 5.22948 5.36454 5.44261 5.50148 5.59870 5.72574 5.76167 5.83852 5.93128 6.04363 6.13881 6.17087 6.27859 6.30431 6.45233 6.70380 6.84030 7.05433 7.25593 7.37734 8.12834 8.41165 8.82556 9.60840 10.99256 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.002698 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.277023 B =10375.507793 C =11778.778660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.133 3.867 4 C -0.201 4.201 5 C -0.082 4.082 6 C -0.127 4.127 7 C -0.076 4.076 8 C -0.115 4.115 9 C -0.072 4.072 10 C -0.130 4.130 11 C 0.192 3.808 12 H 0.102 0.898 13 N -1.111 6.111 14 S 2.600 3.400 15 O -0.958 6.958 16 O -0.960 6.960 17 C -0.614 4.614 18 C -0.098 4.098 19 C 0.018 3.982 20 C -0.607 4.607 21 H 0.052 0.948 22 C 0.015 3.985 23 N -0.913 5.913 24 Si 1.072 2.928 25 H -0.287 1.287 26 H -0.287 1.287 27 H -0.284 1.284 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.416 0.584 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.011 0.989 44 H 0.011 0.989 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.762 -22.378 -2.316 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.088 3.912 4 C -0.220 4.220 5 C -0.100 4.100 6 C -0.146 4.146 7 C -0.078 4.078 8 C -0.116 4.116 9 C -0.109 4.109 10 C -0.169 4.169 11 C 0.085 3.915 12 H 0.120 0.880 13 N -0.867 5.867 14 S 2.696 3.304 15 O -0.948 6.948 16 O -0.951 6.951 17 C -0.745 4.745 18 C -0.137 4.137 19 C -0.021 4.021 20 C -0.645 4.645 21 H 0.070 0.930 22 C -0.188 4.188 23 N -0.549 5.549 24 Si 0.900 3.100 25 H -0.214 1.214 26 H -0.213 1.213 27 H -0.209 1.209 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.250 0.750 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.030 0.970 44 H 0.030 0.970 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.387 -21.155 -2.274 24.620 hybrid contribution -1.639 -1.192 0.227 2.040 sum -14.026 -22.348 -2.046 26.464 Atomic orbital electron populations 1.23053 0.78521 1.03904 1.01347 1.86080 1.21219 1.26945 1.88781 1.18573 0.90691 0.84339 0.97610 1.21180 0.99956 0.92212 1.08603 1.20885 0.94252 0.97203 0.97641 1.20706 0.93581 0.97932 1.02377 1.20566 0.95300 0.92710 0.99242 1.19827 0.90516 0.96430 1.04847 1.20929 0.91657 0.95998 1.02334 1.22720 0.97959 0.93889 1.02307 1.20069 0.89245 0.98565 0.83636 0.87964 1.55818 1.54289 1.62497 1.14065 1.05361 0.73948 0.76698 0.74438 1.93587 1.56953 1.79146 1.65121 1.93586 1.83610 1.86617 1.31245 1.30619 1.11841 1.20116 1.11952 1.21351 0.94751 0.95632 1.01981 1.19180 0.96843 0.90042 0.95996 1.22096 1.01036 0.94023 1.47336 0.92957 1.25885 1.00380 0.98704 0.93856 1.70772 1.04945 1.37759 1.41400 0.83504 0.74465 0.75352 0.76697 1.21364 1.21345 1.20944 0.92661 0.88283 0.92672 0.85241 0.85214 0.85439 0.90356 0.90213 0.89566 0.89103 0.74982 0.85256 0.85599 0.91479 0.91310 0.97046 0.97033 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.96 10.45 -19.45 -0.20 -3.16 16 3 C 0.13 1.35 6.69 -39.17 -0.26 1.08 16 4 C -0.20 -1.81 9.03 -39.48 -0.36 -2.17 16 5 C -0.08 -0.77 10.04 -39.65 -0.40 -1.17 16 6 C -0.13 -1.32 10.04 -39.51 -0.40 -1.72 16 7 C -0.08 -0.80 5.77 -104.22 -0.60 -1.40 16 8 C -0.11 -1.19 6.11 -104.06 -0.64 -1.82 16 9 C -0.07 -0.63 6.71 -26.85 -0.18 -0.81 16 10 C -0.13 -1.16 6.78 -25.33 -0.17 -1.33 16 11 C 0.19 1.97 3.34 -68.06 -0.23 1.74 16 12 H 0.10 0.99 7.67 -51.93 -0.40 0.59 16 13 N -1.11 -12.13 5.31 -5.00 -0.03 -12.16 16 14 S 2.60 37.61 5.32 -107.50 -0.57 37.04 16 15 O -0.96 -16.33 17.80 -57.54 -1.02 -17.36 16 16 O -0.96 -16.86 18.08 -57.54 -1.04 -17.90 16 17 C -0.61 -9.24 6.05 37.16 0.22 -9.02 16 18 C -0.10 -1.98 5.16 -26.73 -0.14 -2.12 16 19 C 0.02 0.44 4.28 -27.89 -0.12 0.32 16 20 C -0.61 -17.28 9.11 -34.44 -0.31 -17.59 16 21 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 22 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 23 N -0.91 -27.72 13.65 55.43 0.76 -26.97 16 24 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H 0.05 0.26 7.65 -51.93 -0.40 -0.14 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.13 0.87 6.29 -52.49 -0.33 0.54 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 38 H 0.42 3.96 8.92 -34.47 -0.31 3.65 16 39 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 40 H 0.13 1.65 7.93 -51.92 -0.41 1.24 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 43 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 44 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 16 45 H 0.27 8.03 7.22 -40.82 -0.29 7.74 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -36.62 384.51 -10.88 -47.50 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.80 Total: 1.43 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: -2.68 Total: -34.51 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.73 Total: -39.12 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -2.27 Total: -38.41 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Atomic # 16 Polarization: 37.61 SS G_CDS: -0.57 Total: 37.04 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.62 -10.88 -47.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131962771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.480 kcal (2) G-P(sol) polarization free energy of solvation -36.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds