Wall clock time and date at job start Tue Mar 31 2020 22:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 109.47251 * 2 1 4 4 C 1.52999 * 109.47199 * 240.00133 * 2 1 3 5 5 S 1.81400 * 109.47172 * 179.97438 * 4 2 1 6 6 C 1.81404 * 102.99902 * 180.02562 * 5 4 2 7 7 O 1.42101 * 109.47027 * 63.61555 * 5 4 2 8 8 N 1.46498 * 109.47139 * 120.00067 * 2 1 3 9 9 C 1.46497 * 120.00219 * 59.99916 * 8 2 1 10 10 C 1.34783 * 120.00022 * 239.99689 * 8 2 1 11 11 O 1.21282 * 120.00033 * 0.02562 * 10 8 2 12 12 C 1.50697 * 119.99917 * 179.97438 * 10 8 2 13 13 C 1.50698 * 109.47110 * 180.02562 * 12 10 8 14 14 C 1.38320 * 119.96576 * 269.72177 * 13 12 10 15 15 C 1.38279 * 120.14055 * 179.76258 * 14 13 12 16 16 C 1.38121 * 120.06625 * 0.51629 * 15 14 13 17 17 C 1.38860 * 119.93148 * 359.74429 * 16 15 14 18 18 O 1.35755 * 120.06973 * 179.97438 * 17 16 15 19 19 C 1.34832 * 116.99667 * 354.48523 * 18 17 16 20 20 H 1.07995 * 120.00554 * 5.06358 * 19 18 17 21 21 C 1.38660 * 119.99633 * 185.05749 * 19 18 17 22 22 N 1.31556 * 120.00062 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99886 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47413 * 60.00081 * 23 21 19 25 25 H 1.48498 * 109.47287 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47388 * 300.00244 * 23 21 19 27 27 C 1.38085 * 119.96634 * 89.99950 * 13 12 10 28 28 H 1.08997 * 109.47285 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46952 * 300.00400 * 1 2 3 30 30 H 1.09004 * 109.46880 * 59.99465 * 1 2 3 31 31 H 1.08997 * 109.47394 * 299.99850 * 4 2 1 32 32 H 1.09004 * 109.46877 * 60.00400 * 4 2 1 33 33 H 1.08993 * 109.47445 * 60.00228 * 6 5 4 34 34 H 1.09000 * 109.46913 * 180.02562 * 6 5 4 35 35 H 1.08995 * 109.46941 * 299.99775 * 6 5 4 36 36 H 1.09001 * 109.47332 * 270.00438 * 9 8 2 37 37 H 1.09003 * 109.46521 * 30.00181 * 9 8 2 38 38 H 1.08997 * 109.47671 * 149.99650 * 9 8 2 39 39 H 1.08997 * 109.47091 * 60.00219 * 12 10 8 40 40 H 1.09003 * 109.47227 * 300.00670 * 12 10 8 41 41 H 1.08005 * 119.92876 * 0.02562 * 14 13 12 42 42 H 1.07997 * 119.97151 * 180.25535 * 15 14 13 43 43 H 1.08005 * 120.03714 * 179.71820 * 16 15 14 44 44 H 0.97001 * 120.00070 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.03129 * 359.95667 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 3.8540 -0.7205 -1.2496 6 6 4.2620 -1.6037 -2.7807 7 8 4.3281 -1.4619 -0.1339 8 7 2.0183 -0.6906 1.1961 9 6 1.6644 -2.0932 1.4280 10 6 2.7932 -0.0356 2.0833 11 8 3.0859 1.1256 1.8916 12 6 3.2951 -0.7459 3.3140 13 6 4.1319 0.2014 4.1346 14 6 5.4952 0.2855 3.9160 15 6 6.2657 1.1571 4.6634 16 6 5.6775 1.9389 5.6384 17 6 4.3101 1.8528 5.8640 18 8 3.7291 2.6195 6.8219 19 6 4.5497 3.3585 7.5956 20 1 5.6089 3.3866 7.3865 21 6 4.0337 4.0824 8.6596 22 7 2.7434 4.0487 8.9140 23 14 5.1704 5.1066 9.7311 24 1 5.8486 6.1304 8.8960 25 1 4.3780 5.7794 10.7916 26 1 6.1883 4.2251 10.3570 27 6 3.5380 0.9804 5.1078 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.8428 -1.0677 -3.6321 34 1 5.3451 -1.6651 -2.8871 35 1 3.8435 -2.6093 -2.7426 36 1 0.7375 -2.1444 1.9993 37 1 1.5295 -2.5968 0.4708 38 1 2.4628 -2.5819 1.9863 39 1 3.9004 -1.6025 3.0177 40 1 2.4470 -1.0881 3.9072 41 1 5.9580 -0.3277 3.1569 42 1 7.3292 1.2236 4.4876 43 1 6.2806 2.6162 6.2250 44 1 2.3823 4.5554 9.6581 45 1 2.4741 0.9114 5.2806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135702617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:15 Heat of formation + Delta-G solvation = -64.708860 kcal Electronic energy + Delta-G solvation = -27335.660916 eV Core-core repulsion = 23446.405264 eV Total energy + Delta-G solvation = -3889.255652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.06325 -38.76718 -36.78628 -36.03538 -35.75492 -32.96187 -32.18382 -31.40472 -29.31761 -29.03012 -27.65918 -27.06143 -26.81988 -25.13323 -22.26440 -21.43836 -20.54535 -19.07526 -17.68735 -17.48994 -17.21894 -16.80835 -16.14459 -15.90024 -15.35020 -14.96120 -14.78800 -14.60118 -14.34033 -14.25601 -13.69071 -13.54658 -13.36090 -13.32975 -13.17914 -13.08970 -12.91889 -12.62266 -12.38624 -12.35626 -12.19857 -12.12502 -11.88528 -11.68775 -11.37765 -11.25389 -11.14413 -10.70532 -10.63770 -10.47389 -10.36750 -10.29848 -9.55362 -9.21494 -8.72648 -8.70271 -8.42430 -7.90941 -7.07311 -6.33551 -3.92299 1.26701 2.23800 2.39765 2.54631 2.89367 3.02675 3.20177 3.21902 3.23837 3.60900 4.06093 4.36182 4.64064 4.69164 4.79635 4.86588 4.91788 4.98401 5.04329 5.14000 5.18620 5.24529 5.34214 5.35440 5.42522 5.44804 5.56336 5.57962 5.65216 5.80552 5.88576 5.90480 5.93169 6.11352 6.32663 6.47786 6.50042 6.80637 7.06889 7.20198 7.39127 7.43862 7.52194 7.57207 7.97880 8.12006 8.38776 9.12358 9.85003 10.85008 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021007 B = 0.002518 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.549063 B =11117.569762 C =11757.082423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.113 0.887 4 C -0.465 4.465 5 S 1.250 4.750 6 C -0.498 4.498 7 O -0.828 6.828 8 N -0.620 5.620 9 C 0.085 3.915 10 C 0.531 3.469 11 O -0.523 6.523 12 C -0.092 4.092 13 C -0.030 4.030 14 C -0.192 4.192 15 C -0.076 4.076 16 C -0.231 4.231 17 C 0.154 3.846 18 O -0.182 6.182 19 C -0.389 4.389 20 H 0.090 0.910 21 C 0.038 3.962 22 N -0.867 5.867 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.271 1.271 27 C -0.175 4.175 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.125 0.875 44 H 0.269 0.731 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 -11.260 -23.752 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.051 3.949 3 H 0.131 0.869 4 C -0.602 4.602 5 S 1.447 4.553 6 C -0.655 4.655 7 O -0.823 6.823 8 N -0.356 5.356 9 C -0.058 4.058 10 C 0.320 3.680 11 O -0.398 6.398 12 C -0.132 4.132 13 C -0.031 4.031 14 C -0.211 4.211 15 C -0.094 4.094 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.086 6.086 19 C -0.466 4.466 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.502 5.502 23 Si 0.765 3.235 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.196 1.196 27 C -0.194 4.194 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.143 0.857 44 H 0.079 0.921 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.617 -10.132 -22.936 25.127 hybrid contribution -0.330 -1.835 0.274 1.885 sum -1.947 -11.968 -22.662 25.702 Atomic orbital electron populations 1.22096 0.94254 1.02188 1.02798 1.20559 0.94725 0.97757 0.81874 0.86933 1.28172 1.21981 1.06037 1.03992 1.71141 0.86091 1.13696 0.84415 1.27753 1.08421 1.10506 1.18798 1.93156 1.72565 1.73485 1.43064 1.47936 1.52143 1.12481 1.23066 1.21655 1.00857 0.81798 1.01493 1.20646 0.76703 0.86757 0.83924 1.90709 1.56417 1.16551 1.76079 1.20600 1.00377 0.98540 0.93636 1.18699 0.93285 0.96253 0.94860 1.20398 0.93282 1.04072 1.03382 1.20674 0.98344 0.95305 0.95074 1.21159 0.95186 1.05389 1.03311 1.19260 0.91182 0.89835 0.89575 1.83978 1.34934 1.50089 1.39551 1.21262 0.91212 1.24987 1.09119 0.89235 1.25256 0.96642 0.97819 0.96857 1.70035 1.11412 1.39922 1.28871 0.85802 0.79084 0.79471 0.79172 1.19561 1.20383 1.19592 1.19933 0.99065 1.00259 1.00159 0.92602 0.91672 0.91325 0.89449 0.85711 0.87310 0.87866 0.90576 0.92802 0.92177 0.90485 0.88091 0.88741 0.87802 0.87544 0.85691 0.92150 0.86991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.19 37.16 0.34 -0.88 16 2 C 0.16 1.49 2.70 -67.93 -0.18 1.31 16 3 H 0.11 1.20 6.90 -51.92 -0.36 0.85 16 4 C -0.46 -3.02 5.28 37.16 0.20 -2.82 16 5 S 1.25 9.74 13.68 -107.50 -1.47 8.27 16 6 C -0.50 -2.81 10.74 101.05 1.09 -1.73 16 7 O -0.83 -11.40 16.28 -35.23 -0.57 -11.98 16 8 N -0.62 -7.56 1.58 -173.93 -0.27 -7.84 16 9 C 0.09 0.83 9.05 59.85 0.54 1.37 16 10 C 0.53 8.61 7.06 -10.98 -0.08 8.53 16 11 O -0.52 -10.30 15.36 5.56 0.09 -10.22 16 12 C -0.09 -1.47 4.38 -29.04 -0.13 -1.60 16 13 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 14 C -0.19 -3.83 9.70 -39.54 -0.38 -4.22 16 15 C -0.08 -1.55 10.04 -39.61 -0.40 -1.95 16 16 C -0.23 -5.45 9.17 -39.39 -0.36 -5.81 16 17 C 0.15 4.03 6.65 -39.11 -0.26 3.77 16 18 O -0.18 -5.46 9.76 0.03 0.00 -5.46 16 19 C -0.39 -11.38 9.49 30.89 0.29 -11.08 16 20 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.87 -26.29 13.67 55.48 0.76 -25.53 16 23 Si 0.94 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 C -0.17 -4.06 9.65 -39.39 -0.38 -4.44 16 28 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.58 6.66 -51.93 -0.35 0.23 16 32 H 0.12 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 38 H 0.08 0.78 6.44 -51.93 -0.33 0.44 16 39 H 0.10 1.47 7.34 -51.93 -0.38 1.09 16 40 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 41 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 42 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.11 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -38.78 383.97 -7.48 -46.26 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.50 Total: 4.11 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -0.27 Total: -19.65 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.48 Total: -33.37 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.49 Total: -27.66 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 9.74 SS G_CDS: -1.47 Total: 8.27 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.78 -7.48 -46.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135702617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.448 kcal (2) G-P(sol) polarization free energy of solvation -38.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds