Wall clock time and date at job start Tue Mar 31 2020 22:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 109.47251 * 2 1 4 4 C 1.52999 * 109.47199 * 240.00133 * 2 1 3 5 5 S 1.81400 * 109.47172 * 179.97438 * 4 2 1 6 6 C 1.81404 * 102.99902 * 180.02562 * 5 4 2 7 7 O 1.42101 * 109.47027 * 63.61555 * 5 4 2 8 8 N 1.46498 * 109.47139 * 120.00067 * 2 1 3 9 9 C 1.46497 * 120.00219 * 59.99916 * 8 2 1 10 10 C 1.34783 * 120.00022 * 239.99689 * 8 2 1 11 11 O 1.21282 * 120.00033 * 0.02562 * 10 8 2 12 12 C 1.50697 * 119.99917 * 179.97438 * 10 8 2 13 13 C 1.50698 * 109.47110 * 180.02562 * 12 10 8 14 14 C 1.38320 * 119.96576 * 269.72177 * 13 12 10 15 15 C 1.38279 * 120.14055 * 179.76258 * 14 13 12 16 16 C 1.38121 * 120.06625 * 0.51629 * 15 14 13 17 17 C 1.38860 * 119.93148 * 359.74429 * 16 15 14 18 18 O 1.35755 * 120.06973 * 179.97438 * 17 16 15 19 19 C 1.34832 * 116.99667 * 354.48523 * 18 17 16 20 20 H 1.07995 * 120.00554 * 5.06358 * 19 18 17 21 21 C 1.38660 * 119.99633 * 185.05749 * 19 18 17 22 22 N 1.31556 * 120.00062 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99886 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47413 * 60.00081 * 23 21 19 25 25 H 1.48498 * 109.47287 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47388 * 300.00244 * 23 21 19 27 27 C 1.38085 * 119.96634 * 89.99950 * 13 12 10 28 28 H 1.08997 * 109.47285 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46952 * 300.00400 * 1 2 3 30 30 H 1.09004 * 109.46880 * 59.99465 * 1 2 3 31 31 H 1.08997 * 109.47394 * 299.99850 * 4 2 1 32 32 H 1.09004 * 109.46877 * 60.00400 * 4 2 1 33 33 H 1.08993 * 109.47445 * 60.00228 * 6 5 4 34 34 H 1.09000 * 109.46913 * 180.02562 * 6 5 4 35 35 H 1.08995 * 109.46941 * 299.99775 * 6 5 4 36 36 H 1.09001 * 109.47332 * 270.00438 * 9 8 2 37 37 H 1.09003 * 109.46521 * 30.00181 * 9 8 2 38 38 H 1.08997 * 109.47671 * 149.99650 * 9 8 2 39 39 H 1.08997 * 109.47091 * 60.00219 * 12 10 8 40 40 H 1.09003 * 109.47227 * 300.00670 * 12 10 8 41 41 H 1.08005 * 119.92876 * 0.02562 * 14 13 12 42 42 H 1.07997 * 119.97151 * 180.25535 * 15 14 13 43 43 H 1.08005 * 120.03714 * 179.71820 * 16 15 14 44 44 H 0.97001 * 120.00070 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.03129 * 359.95667 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 3.8540 -0.7205 -1.2496 6 6 4.2620 -1.6037 -2.7807 7 8 4.3281 -1.4619 -0.1339 8 7 2.0183 -0.6906 1.1961 9 6 1.6644 -2.0932 1.4280 10 6 2.7932 -0.0356 2.0833 11 8 3.0859 1.1256 1.8916 12 6 3.2951 -0.7459 3.3140 13 6 4.1319 0.2014 4.1346 14 6 5.4952 0.2855 3.9160 15 6 6.2657 1.1571 4.6634 16 6 5.6775 1.9389 5.6384 17 6 4.3101 1.8528 5.8640 18 8 3.7291 2.6195 6.8219 19 6 4.5497 3.3585 7.5956 20 1 5.6089 3.3866 7.3865 21 6 4.0337 4.0824 8.6596 22 7 2.7434 4.0487 8.9140 23 14 5.1704 5.1066 9.7311 24 1 5.8486 6.1304 8.8960 25 1 4.3780 5.7794 10.7916 26 1 6.1883 4.2251 10.3570 27 6 3.5380 0.9804 5.1078 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.8428 -1.0677 -3.6321 34 1 5.3451 -1.6651 -2.8871 35 1 3.8435 -2.6093 -2.7426 36 1 0.7375 -2.1444 1.9993 37 1 1.5295 -2.5968 0.4708 38 1 2.4628 -2.5819 1.9863 39 1 3.9004 -1.6025 3.0177 40 1 2.4470 -1.0881 3.9072 41 1 5.9580 -0.3277 3.1569 42 1 7.3292 1.2236 4.4876 43 1 6.2806 2.6162 6.2250 44 1 2.3823 4.5554 9.6581 45 1 2.4741 0.9114 5.2806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135702617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:14 Heat of formation + Delta-G solvation = -91.532276 kcal Electronic energy + Delta-G solvation = -27336.824067 eV Core-core repulsion = 23446.405264 eV Total energy + Delta-G solvation = -3890.418803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30994 -40.53404 -38.37778 -37.34599 -36.54054 -34.37064 -34.00589 -32.74059 -30.85966 -29.79646 -28.47999 -28.23836 -27.81281 -27.21984 -23.56466 -23.15068 -22.03079 -20.17138 -19.40980 -18.73197 -18.33440 -18.31531 -17.10550 -16.98002 -16.69795 -16.25923 -16.11121 -16.05449 -15.50200 -15.46365 -15.36956 -14.89531 -14.61580 -14.35213 -14.17882 -14.05862 -13.96682 -13.73604 -13.58801 -13.48818 -13.30966 -13.00704 -12.95430 -12.88106 -12.75750 -12.50768 -12.44578 -12.35986 -12.23313 -12.11615 -11.93569 -11.20172 -10.98449 -10.85907 -10.76054 -9.66860 -9.64021 -9.03351 -8.98266 -8.45472 -6.14221 0.51684 0.69247 0.74996 1.35137 1.46736 1.52011 1.67843 1.85834 2.05221 2.19399 2.83801 2.99954 3.16769 3.42577 3.64884 3.81816 3.98262 4.07499 4.12822 4.16603 4.29985 4.30846 4.32423 4.36458 4.51116 4.53420 4.57887 4.58850 4.65636 4.72293 4.79577 4.80834 4.89849 5.04173 5.11141 5.13850 5.15851 5.26752 5.30220 5.62061 5.64704 5.71834 5.76501 6.03655 6.19956 6.35218 6.98689 7.21008 7.79906 8.77996 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021007 B = 0.002518 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.549063 B =11117.569762 C =11757.082423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.142 3.858 3 H 0.097 0.903 4 C -0.450 4.450 5 S 1.249 4.751 6 C -0.484 4.484 7 O -0.893 6.893 8 N -0.612 5.612 9 C 0.078 3.922 10 C 0.526 3.474 11 O -0.570 6.570 12 C -0.092 4.092 13 C -0.023 4.023 14 C -0.182 4.182 15 C -0.070 4.070 16 C -0.243 4.243 17 C 0.116 3.884 18 O -0.233 6.233 19 C -0.415 4.415 20 H 0.101 0.899 21 C -0.024 4.024 22 N -0.923 5.923 23 Si 1.021 2.979 24 H -0.257 1.257 25 H -0.270 1.270 26 H -0.256 1.256 27 C -0.191 4.191 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.133 0.867 42 H 0.147 0.853 43 H 0.122 0.878 44 H 0.273 0.727 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 -12.629 -26.661 29.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.039 3.961 3 H 0.115 0.885 4 C -0.588 4.588 5 S 1.449 4.551 6 C -0.643 4.643 7 O -0.889 6.889 8 N -0.346 5.346 9 C -0.065 4.065 10 C 0.316 3.684 11 O -0.449 6.449 12 C -0.131 4.131 13 C -0.023 4.023 14 C -0.201 4.201 15 C -0.087 4.087 16 C -0.263 4.263 17 C 0.066 3.934 18 O -0.140 6.140 19 C -0.491 4.491 20 H 0.118 0.882 21 C -0.221 4.221 22 N -0.561 5.561 23 Si 0.839 3.161 24 H -0.182 1.182 25 H -0.195 1.195 26 H -0.181 1.181 27 C -0.210 4.210 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.184 0.816 33 H 0.160 0.840 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.151 0.849 42 H 0.164 0.836 43 H 0.140 0.860 44 H 0.082 0.918 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.795 -11.567 -25.895 28.372 hybrid contribution -0.627 -1.639 0.815 1.935 sum -1.421 -13.207 -25.080 28.380 Atomic orbital electron populations 1.22068 0.92718 1.03009 1.03002 1.20845 0.95922 0.97300 0.82049 0.88505 1.28029 1.20175 1.06577 1.03978 1.70431 0.86780 1.13714 0.84179 1.27613 1.08604 1.10174 1.17875 1.93070 1.74650 1.74998 1.46177 1.47977 1.50461 1.13267 1.22887 1.21865 1.01358 0.80372 1.02885 1.20578 0.77189 0.86254 0.84425 1.90688 1.58657 1.18343 1.77233 1.20660 1.00854 0.97998 0.93626 1.19120 0.94186 0.95440 0.93603 1.20865 0.93162 1.03196 1.02828 1.21094 1.00403 0.93843 0.93398 1.21287 0.94248 1.06257 1.04471 1.19799 0.92870 0.90821 0.89875 1.83941 1.36439 1.52116 1.41458 1.21811 0.91936 1.25581 1.09815 0.88158 1.26630 0.98562 0.98892 0.98020 1.70190 1.13870 1.41868 1.30180 0.84628 0.76830 0.77646 0.76960 1.18173 1.19473 1.18062 1.20126 0.98887 1.00900 1.01104 0.91392 0.93890 0.88795 0.88760 0.81554 0.83951 0.87979 0.91176 0.91259 0.90253 0.90876 0.86131 0.86955 0.84916 0.83565 0.85984 0.91837 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.19 71.98 0.66 -1.36 16 2 C 0.14 2.47 2.70 44.99 0.12 2.59 16 3 H 0.10 2.02 6.90 -2.38 -0.02 2.01 16 4 C -0.45 -4.35 5.28 71.98 0.38 -3.97 16 5 S 1.25 17.08 13.68 -56.49 -0.77 16.31 16 6 C -0.48 -3.93 10.74 113.37 1.22 -2.72 16 7 O -0.89 -23.74 16.28 -148.98 -2.43 -26.17 16 8 N -0.61 -14.16 1.58 -822.59 -1.30 -15.46 16 9 C 0.08 1.35 9.05 127.77 1.16 2.50 16 10 C 0.53 16.94 7.06 87.66 0.62 17.56 16 11 O -0.57 -22.92 15.36 -3.04 -0.05 -22.97 16 12 C -0.09 -2.88 4.38 29.10 0.13 -2.75 16 13 C -0.02 -0.92 4.37 -19.88 -0.09 -1.01 16 14 C -0.18 -6.98 9.70 22.30 0.22 -6.76 16 15 C -0.07 -2.76 10.04 22.25 0.22 -2.53 16 16 C -0.24 -11.74 9.17 22.39 0.21 -11.53 16 17 C 0.12 6.39 6.65 22.58 0.15 6.54 16 18 O -0.23 -14.96 9.76 -22.81 -0.22 -15.18 16 19 C -0.42 -25.49 9.49 67.92 0.64 -24.85 16 20 H 0.10 5.66 5.20 -2.91 -0.02 5.64 16 21 C -0.02 -1.42 5.49 84.84 0.47 -0.95 16 22 N -0.92 -58.76 13.67 21.61 0.30 -58.47 16 23 Si 1.02 44.53 29.55 68.60 2.03 46.56 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 27 C -0.19 -9.27 9.65 22.39 0.22 -9.06 16 28 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.09 0.86 6.66 -2.39 -0.02 0.84 16 32 H 0.17 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.08 6.43 -2.39 -0.02 1.06 16 38 H 0.07 1.34 6.44 -2.39 -0.02 1.33 16 39 H 0.12 3.30 7.34 -2.39 -0.02 3.28 16 40 H 0.11 3.06 8.05 -2.39 -0.02 3.05 16 41 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 42 H 0.15 4.60 8.06 -2.91 -0.02 4.58 16 43 H 0.12 5.84 5.64 -2.91 -0.02 5.82 16 44 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 45 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -91.31 383.97 4.87 -86.44 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.99 Total: 27.22 kcal Atomic # 6 Polarization: -44.60 SS G_CDS: 6.32 Total: -38.28 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -1.00 Total: -73.93 kcal Atomic # 8 Polarization: -61.63 SS G_CDS: -2.69 Total: -64.32 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 17.08 SS G_CDS: -0.77 Total: 16.31 kcal Total: -91.31 4.87 -86.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135702617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.094 kcal (2) G-P(sol) polarization free energy of solvation -91.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds