Wall clock time and date at job start Tue Mar 31 2020 22:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 109.47251 * 2 1 4 4 C 1.52999 * 109.47199 * 240.00133 * 2 1 3 5 5 S 1.81400 * 109.47172 * 179.97438 * 4 2 1 6 6 C 1.81404 * 102.99902 * 180.02562 * 5 4 2 7 7 O 1.42103 * 109.47303 * 296.38734 * 5 4 2 8 8 N 1.46498 * 109.47139 * 120.00067 * 2 1 3 9 9 C 1.46497 * 120.00219 * 59.99916 * 8 2 1 10 10 C 1.34783 * 120.00022 * 239.99689 * 8 2 1 11 11 O 1.21282 * 120.00033 * 0.02562 * 10 8 2 12 12 C 1.50697 * 119.99917 * 179.97438 * 10 8 2 13 13 C 1.50698 * 109.47110 * 180.02562 * 12 10 8 14 14 C 1.38320 * 119.96576 * 269.72177 * 13 12 10 15 15 C 1.38279 * 120.14055 * 179.76258 * 14 13 12 16 16 C 1.38121 * 120.06625 * 0.51629 * 15 14 13 17 17 C 1.38860 * 119.93148 * 359.74429 * 16 15 14 18 18 O 1.35755 * 120.06973 * 179.97438 * 17 16 15 19 19 C 1.34832 * 116.99667 * 354.48523 * 18 17 16 20 20 H 1.07995 * 120.00554 * 5.06358 * 19 18 17 21 21 C 1.38660 * 119.99633 * 185.05749 * 19 18 17 22 22 N 1.31555 * 119.99681 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00028 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46922 * 89.99860 * 23 21 19 25 25 H 1.48498 * 109.47173 * 209.99865 * 23 21 19 26 26 H 1.48505 * 109.47159 * 330.00108 * 23 21 19 27 27 C 1.38085 * 119.96634 * 89.99950 * 13 12 10 28 28 H 1.08997 * 109.47285 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46952 * 300.00400 * 1 2 3 30 30 H 1.09004 * 109.46880 * 59.99465 * 1 2 3 31 31 H 1.08997 * 109.47394 * 299.99850 * 4 2 1 32 32 H 1.09004 * 109.46877 * 60.00400 * 4 2 1 33 33 H 1.08993 * 109.47445 * 60.00228 * 6 5 4 34 34 H 1.09000 * 109.46913 * 180.02562 * 6 5 4 35 35 H 1.08995 * 109.46941 * 299.99775 * 6 5 4 36 36 H 1.09001 * 109.47332 * 270.00438 * 9 8 2 37 37 H 1.09003 * 109.46521 * 30.00181 * 9 8 2 38 38 H 1.08997 * 109.47671 * 149.99650 * 9 8 2 39 39 H 1.08997 * 109.47091 * 60.00219 * 12 10 8 40 40 H 1.09003 * 109.47227 * 300.00670 * 12 10 8 41 41 H 1.08005 * 119.92876 * 0.02562 * 14 13 12 42 42 H 1.07997 * 119.97151 * 180.25535 * 15 14 13 43 43 H 1.08005 * 120.03714 * 179.71820 * 16 15 14 44 44 H 0.97001 * 119.99674 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.03129 * 359.95667 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 3.8540 -0.7205 -1.2496 6 6 4.2620 -1.6037 -2.7807 7 8 4.3272 0.6167 -1.3343 8 7 2.0183 -0.6906 1.1961 9 6 1.6644 -2.0932 1.4280 10 6 2.7932 -0.0356 2.0833 11 8 3.0859 1.1256 1.8916 12 6 3.2951 -0.7459 3.3140 13 6 4.1319 0.2014 4.1346 14 6 5.4952 0.2855 3.9160 15 6 6.2657 1.1571 4.6634 16 6 5.6775 1.9389 5.6384 17 6 4.3101 1.8528 5.8640 18 8 3.7291 2.6195 6.8219 19 6 4.5497 3.3585 7.5956 20 1 5.6089 3.3866 7.3865 21 6 4.0337 4.0824 8.6596 22 7 4.8343 4.8037 9.4142 23 14 2.2018 4.0334 9.0216 24 1 1.9125 2.9203 9.9611 25 1 1.7837 5.3197 9.6346 26 1 1.4528 3.8210 7.7570 27 6 3.5380 0.9804 5.1078 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.8428 -1.0677 -3.6321 34 1 5.3451 -1.6651 -2.8871 35 1 3.8435 -2.6093 -2.7426 36 1 0.7375 -2.1444 1.9993 37 1 1.5295 -2.5968 0.4708 38 1 2.4628 -2.5819 1.9863 39 1 3.9004 -1.6025 3.0177 40 1 2.4470 -1.0881 3.9072 41 1 5.9580 -0.3277 3.1569 42 1 7.3292 1.2236 4.4876 43 1 6.2806 2.6162 6.2250 44 1 4.4732 5.3105 10.1584 45 1 2.4741 0.9114 5.2806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135702689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:21 Heat of formation + Delta-G solvation = -95.676258 kcal Electronic energy + Delta-G solvation = -27210.612205 eV Core-core repulsion = 23320.013705 eV Total energy + Delta-G solvation = -3890.598500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29254 -40.59958 -38.44019 -37.34391 -36.81567 -34.48830 -34.03892 -32.72529 -31.02185 -29.86307 -28.40641 -28.29847 -27.55296 -27.15206 -23.62189 -23.07892 -21.91868 -20.03635 -19.58911 -18.78240 -18.51811 -18.14984 -17.05688 -16.96744 -16.81254 -16.40226 -16.27719 -15.85568 -15.64560 -15.49810 -15.28315 -14.94763 -14.51995 -14.42347 -14.27902 -14.13780 -13.97696 -13.84722 -13.75285 -13.39237 -13.24708 -13.07460 -13.02637 -12.83085 -12.67677 -12.58090 -12.48042 -12.40534 -12.26008 -11.92279 -11.89078 -11.29349 -11.11617 -10.92025 -10.76620 -9.64455 -9.62224 -9.18833 -9.02959 -8.50156 -6.22727 0.52147 0.59634 0.73893 1.28725 1.33995 1.50739 1.72818 1.78494 2.07147 2.27942 2.78655 2.88422 3.08345 3.14850 3.66643 3.81071 3.99496 4.11003 4.12190 4.24193 4.27310 4.33917 4.46235 4.48657 4.51658 4.54503 4.59566 4.70457 4.73638 4.74890 4.86797 4.96894 5.00982 5.10691 5.12277 5.21575 5.28522 5.31754 5.41489 5.67974 5.68537 5.76502 5.78592 5.93538 6.28016 6.48464 6.84217 7.32036 7.59997 8.61945 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.002676 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.052707 B =10461.348927 C =11205.670768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.151 3.849 3 H 0.047 0.953 4 C -0.445 4.445 5 S 1.252 4.748 6 C -0.484 4.484 7 O -0.929 6.929 8 N -0.613 5.613 9 C 0.050 3.950 10 C 0.503 3.497 11 O -0.582 6.582 12 C -0.089 4.089 13 C -0.029 4.029 14 C -0.170 4.170 15 C -0.081 4.081 16 C -0.243 4.243 17 C 0.116 3.884 18 O -0.248 6.248 19 C -0.400 4.400 20 H 0.078 0.922 21 C 0.008 3.992 22 N -0.925 5.925 23 Si 0.973 3.027 24 H -0.259 1.259 25 H -0.267 1.267 26 H -0.269 1.269 27 C -0.182 4.182 28 H 0.098 0.902 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.176 0.824 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.157 0.843 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.159 0.841 40 H 0.131 0.869 41 H 0.154 0.846 42 H 0.138 0.862 43 H 0.104 0.896 44 H 0.285 0.715 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.161 -27.713 -23.496 37.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.046 3.954 3 H 0.065 0.935 4 C -0.583 4.583 5 S 1.454 4.546 6 C -0.643 4.643 7 O -0.925 6.925 8 N -0.347 5.347 9 C -0.090 4.090 10 C 0.292 3.708 11 O -0.460 6.460 12 C -0.128 4.128 13 C -0.030 4.030 14 C -0.188 4.188 15 C -0.099 4.099 16 C -0.262 4.262 17 C 0.068 3.932 18 O -0.156 6.156 19 C -0.476 4.476 20 H 0.096 0.904 21 C -0.190 4.190 22 N -0.566 5.566 23 Si 0.795 3.205 24 H -0.183 1.183 25 H -0.191 1.191 26 H -0.193 1.193 27 C -0.201 4.201 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.193 0.807 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.175 0.825 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.177 0.823 40 H 0.149 0.851 41 H 0.172 0.828 42 H 0.156 0.844 43 H 0.122 0.878 44 H 0.094 0.906 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.577 -26.538 -22.712 35.967 hybrid contribution -0.825 2.538 -1.210 2.931 sum -9.402 -23.999 -23.922 35.166 Atomic orbital electron populations 1.22054 0.92360 1.04411 1.01842 1.20451 0.95973 0.95611 0.83367 0.93458 1.27907 1.19238 1.09939 1.01260 1.69543 0.87275 0.95654 1.02109 1.27617 1.09047 1.12331 1.15322 1.93119 1.75722 1.39295 1.84372 1.48126 1.50422 1.14657 1.21518 1.22435 1.03224 0.78043 1.05295 1.21275 0.77924 0.86561 0.85026 1.90823 1.58691 1.19734 1.76796 1.20840 1.01730 0.97927 0.92264 1.19336 0.94145 0.95843 0.93653 1.21087 0.93345 1.02305 1.02104 1.21128 1.00516 0.94497 0.93786 1.21311 0.94843 1.05815 1.04276 1.19625 0.92570 0.91193 0.89833 1.83503 1.36211 1.53240 1.42664 1.20714 0.91810 1.25351 1.09721 0.90450 1.25302 1.04706 0.94788 0.94192 1.69736 1.37587 1.30442 1.18873 0.85194 0.77911 0.78533 0.78893 1.18318 1.19142 1.19329 1.20302 0.99361 0.99916 1.00510 0.88355 0.93832 0.91518 0.80657 0.88736 0.91367 0.87603 0.82472 0.91333 0.87133 0.87348 0.82348 0.85109 0.82829 0.84392 0.87803 0.90579 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.19 71.98 0.66 -1.17 16 2 C 0.15 2.59 2.70 44.99 0.12 2.71 16 3 H 0.05 1.41 6.90 -2.38 -0.02 1.39 16 4 C -0.44 -4.22 5.27 71.98 0.38 -3.84 16 5 S 1.25 18.43 13.38 -56.49 -0.76 17.67 16 6 C -0.48 -3.71 10.74 113.37 1.22 -2.50 16 7 O -0.93 -32.17 18.14 -148.98 -2.70 -34.88 16 8 N -0.61 -8.68 2.30 -822.59 -1.89 -10.57 16 9 C 0.05 0.05 9.30 127.77 1.19 1.24 16 10 C 0.50 12.27 7.67 87.66 0.67 12.94 16 11 O -0.58 -22.97 15.36 -3.04 -0.05 -23.02 16 12 C -0.09 -1.64 4.38 29.10 0.13 -1.52 16 13 C -0.03 -0.94 4.37 -19.88 -0.09 -1.03 16 14 C -0.17 -5.45 9.70 22.30 0.22 -5.24 16 15 C -0.08 -3.11 10.04 22.25 0.22 -2.88 16 16 C -0.24 -11.80 9.17 22.39 0.21 -11.59 16 17 C 0.12 5.96 6.65 22.58 0.15 6.11 16 18 O -0.25 -14.53 8.59 -22.81 -0.20 -14.72 16 19 C -0.40 -25.08 9.95 67.92 0.68 -24.40 16 20 H 0.08 5.10 5.44 -2.91 -0.02 5.09 16 21 C 0.01 0.48 5.49 84.84 0.47 0.95 16 22 N -0.93 -57.67 13.96 21.61 0.30 -57.37 16 23 Si 0.97 47.71 28.62 68.60 1.96 49.67 16 24 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 27 C -0.18 -7.57 9.65 22.39 0.22 -7.35 16 28 H 0.10 0.50 7.67 -2.39 -0.02 0.48 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.18 -0.34 6.66 -2.39 -0.02 -0.36 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.16 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.11 -0.66 6.43 -2.39 -0.02 -0.67 16 38 H 0.11 -0.40 6.44 -2.39 -0.02 -0.42 16 39 H 0.16 1.20 7.34 -2.39 -0.02 1.18 16 40 H 0.13 1.73 8.05 -2.39 -0.02 1.71 16 41 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 42 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 43 H 0.10 5.50 5.64 -2.91 -0.02 5.49 16 44 H 0.28 16.20 8.31 -92.71 -0.77 15.43 16 45 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -104.55 385.97 4.10 -100.45 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.99 Total: 10.34 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 6.43 Total: -37.57 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -1.59 Total: -67.95 kcal Atomic # 8 Polarization: -69.67 SS G_CDS: -2.94 Total: -72.62 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.96 Total: 49.67 kcal Atomic # 16 Polarization: 18.43 SS G_CDS: -0.76 Total: 17.67 kcal Total: -104.55 4.10 -100.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135702689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.771 kcal (2) G-P(sol) polarization free energy of solvation -104.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds