Wall clock time and date at job start Tue Mar 31 2020 23:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00096 * 2 1 4 4 C 1.34783 * 119.99993 * 180.02562 * 2 1 3 5 5 O 1.21279 * 119.99774 * 359.97438 * 4 2 1 6 6 C 1.50705 * 119.99679 * 179.97438 * 4 2 1 7 7 N 1.46500 * 109.46576 * 179.97438 * 6 4 2 8 8 C 1.34784 * 126.58671 * 125.00421 * 7 6 4 9 9 C 1.36668 * 106.83741 * 180.23977 * 8 7 6 10 10 C 1.47378 * 125.78024 * 179.73707 * 9 8 7 11 11 O 1.21518 * 120.00371 * 359.97438 * 10 9 8 12 12 O 1.34755 * 119.99812 * 179.97438 * 10 9 8 13 13 C 1.45206 * 116.99856 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47009 * 180.02562 * 13 12 10 15 15 O 1.21289 * 119.99870 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00154 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00250 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47257 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99748 * 359.97438 * 18 17 16 20 20 C 1.37883 * 120.00167 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99636 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99920 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47096 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47178 * 119.99957 * 22 20 18 25 25 H 1.48500 * 109.46706 * 239.99519 * 22 20 18 26 26 N 1.34445 * 108.43336 * 359.59971 * 9 8 7 27 27 N 1.28756 * 109.51685 * 0.40680 * 26 9 8 28 28 H 1.08995 * 109.47205 * 269.99837 * 1 2 3 29 29 H 1.08999 * 109.47095 * 29.99523 * 1 2 3 30 30 H 1.09003 * 109.47069 * 149.99715 * 1 2 3 31 31 H 1.09001 * 109.46901 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46707 * 300.00215 * 3 2 1 33 33 H 1.08994 * 109.46830 * 60.00423 * 3 2 1 34 34 H 1.08994 * 109.47229 * 59.99942 * 6 4 2 35 35 H 1.08997 * 109.47055 * 299.99538 * 6 4 2 36 36 H 1.08002 * 126.57778 * 359.96682 * 8 7 6 37 37 H 1.08998 * 109.46776 * 299.99914 * 13 12 10 38 38 H 1.08993 * 109.47011 * 60.00269 * 13 12 10 39 39 H 0.96998 * 119.99662 * 359.97438 * 16 14 13 40 40 H 1.09005 * 109.46933 * 300.00089 * 17 16 14 41 41 H 1.09000 * 109.47121 * 59.99335 * 17 16 14 42 42 H 0.96996 * 119.99573 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 7 4.1342 -2.5484 -0.0010 8 6 4.9870 -3.0991 -0.8877 9 6 5.1618 -4.4016 -0.5123 10 6 6.0119 -5.3898 -1.2000 11 8 6.6334 -5.0698 -2.1939 12 8 6.0998 -6.6484 -0.7265 13 6 6.9553 -7.5683 -1.4547 14 6 6.9283 -8.9174 -0.7837 15 8 6.2541 -9.0870 0.2102 16 7 7.6534 -9.9355 -1.2879 17 6 7.6268 -11.2471 -0.6359 18 6 8.5156 -12.2015 -1.3908 19 1 9.0469 -11.8648 -2.2688 20 6 8.6498 -13.5049 -0.9614 21 7 8.0024 -13.9149 0.1075 22 14 9.7511 -14.6881 -1.8976 23 1 10.3617 -13.9856 -3.0547 24 1 10.8229 -15.1843 -0.9974 25 1 8.9438 -15.8351 -2.3852 26 7 4.4294 -4.6277 0.5922 27 7 3.8044 -3.5513 0.9217 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 3.2692 1.0695 -0.0005 32 1 1.9341 1.8403 -0.8900 33 1 1.9342 1.8402 0.8900 34 1 4.0096 -0.6535 0.8888 35 1 4.0089 -0.6532 -0.8911 36 1 5.4411 -2.6069 -1.7350 37 1 6.5957 -7.6652 -2.4791 38 1 7.9761 -7.1864 -1.4625 39 1 8.1923 -9.7999 -2.0829 40 1 7.9853 -11.1508 0.3890 41 1 6.6058 -11.6289 -0.6292 42 1 8.0971 -14.8317 0.4098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138840050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:20 Heat of formation + Delta-G solvation = -35.594491 kcal Electronic energy + Delta-G solvation = -27548.300126 eV Core-core repulsion = 23146.306504 eV Total energy + Delta-G solvation = -4401.993622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.59831 -40.54754 -40.19635 -38.57931 -36.33382 -36.31497 -35.09788 -34.16587 -32.34905 -31.51949 -30.30577 -29.10124 -28.26451 -26.73754 -26.33433 -24.27374 -22.90044 -22.46712 -21.23544 -20.14926 -19.85035 -18.55829 -18.09132 -17.43448 -17.23195 -16.81773 -16.66074 -16.46144 -15.99398 -15.73906 -15.39335 -15.06954 -14.93907 -14.64037 -14.39876 -14.19267 -14.08703 -13.43872 -13.35861 -13.14465 -13.01666 -12.88135 -12.73276 -12.58866 -12.22624 -11.93921 -11.69946 -11.52551 -11.17723 -10.94938 -10.90363 -10.85059 -10.64477 -10.42074 -10.29871 -9.65733 -9.48550 -9.36560 -9.08246 -8.73089 -7.90745 -6.14407 -4.21576 0.66023 1.33581 1.40456 1.78110 2.22184 2.39938 2.86179 3.26015 3.28146 3.33031 3.36209 3.44806 3.74008 3.83282 4.02883 4.10929 4.20555 4.35083 4.41397 4.54768 4.62271 4.65592 4.83800 4.88290 4.93209 5.12693 5.21663 5.22239 5.30401 5.40836 5.43829 5.57997 5.80210 6.25442 6.45685 7.30023 7.33654 7.38505 7.49865 7.53316 7.67303 7.79892 7.97904 8.57766 8.78164 9.05140 9.44655 10.95818 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.038798 B = 0.001548 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.506979 B =18088.974421 C =18494.267021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.620 5.620 3 C 0.071 3.929 4 C 0.498 3.502 5 O -0.500 6.500 6 C 0.106 3.894 7 N -0.359 5.359 8 C 0.103 3.897 9 C -0.080 4.080 10 C 0.558 3.442 11 O -0.509 6.509 12 O -0.307 6.307 13 C 0.049 3.951 14 C 0.498 3.502 15 O -0.528 6.528 16 N -0.707 5.707 17 C 0.250 3.750 18 C -0.544 4.544 19 H 0.065 0.935 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 N -0.172 5.172 27 N -0.028 5.028 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.211 0.789 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.392 0.608 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.296 38.083 -4.319 39.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.356 5.356 3 C -0.072 4.072 4 C 0.283 3.717 5 O -0.373 6.373 6 C -0.020 4.020 7 N -0.143 5.143 8 C -0.053 4.053 9 C -0.216 4.216 10 C 0.400 3.600 11 O -0.398 6.398 12 O -0.220 6.220 13 C -0.029 4.029 14 C 0.281 3.719 15 O -0.405 6.405 16 N -0.358 5.358 17 C 0.130 3.870 18 C -0.582 4.582 19 H 0.083 0.917 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 N -0.047 5.047 27 N -0.010 5.010 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.227 0.773 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.225 0.775 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.771 36.930 -2.516 38.551 hybrid contribution 1.420 -0.051 -1.844 2.328 sum -9.351 36.879 -4.360 38.295 Atomic orbital electron populations 1.21691 0.77971 1.03531 1.02475 1.47664 1.07709 1.05823 1.74391 1.21966 0.96871 0.85327 1.03082 1.20355 0.89241 0.84247 0.77875 1.90881 1.69098 1.30485 1.46799 1.21828 0.93806 0.78780 1.07557 1.49971 1.31843 1.11385 1.21111 1.23230 0.93020 0.93505 0.95512 1.20179 1.08399 0.93069 0.99954 1.19404 0.78179 0.81274 0.81106 1.90868 1.43918 1.80098 1.24868 1.86719 1.62266 1.19592 1.53447 1.22948 0.95318 0.88383 0.96232 1.19860 0.81589 0.84963 0.85485 1.90745 1.41169 1.83263 1.25286 1.46336 1.46312 1.12206 1.30940 1.19178 0.97918 0.76323 0.93556 1.21252 1.28610 0.95518 1.12841 0.91714 1.24958 0.95881 0.98113 0.95077 1.69989 1.41322 1.17635 1.23204 0.86340 0.80114 0.80673 0.79650 1.19617 1.20806 1.20811 1.74946 1.03221 1.17134 1.09410 1.82270 1.18050 0.89687 1.10957 0.92205 0.90779 0.90202 0.90389 0.91193 0.91162 0.85116 0.84611 0.77254 0.88265 0.88246 0.77483 0.95227 0.95229 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.33 10.48 59.85 0.63 0.95 16 2 N -0.62 -2.39 3.27 -189.51 -0.62 -3.01 16 3 C 0.07 -0.03 10.60 59.85 0.63 0.60 16 4 C 0.50 3.46 7.71 -10.98 -0.08 3.37 16 5 O -0.50 -6.33 15.31 5.56 0.09 -6.24 16 6 C 0.11 0.38 5.33 -5.19 -0.03 0.35 16 7 N -0.36 -3.22 3.41 -62.23 -0.21 -3.44 16 8 C 0.10 0.90 11.27 -16.82 -0.19 0.71 16 9 C -0.08 -1.09 7.02 -83.57 -0.59 -1.68 16 10 C 0.56 8.46 7.96 34.45 0.27 8.73 16 11 O -0.51 -7.52 16.65 -19.28 -0.32 -7.85 16 12 O -0.31 -5.50 9.76 -47.32 -0.46 -5.96 16 13 C 0.05 0.78 5.95 36.01 0.21 1.00 16 14 C 0.50 10.52 7.91 -10.99 -0.09 10.43 16 15 O -0.53 -13.75 16.50 -14.11 -0.23 -13.99 16 16 N -0.71 -15.10 5.55 -61.47 -0.34 -15.44 16 17 C 0.25 6.73 5.43 -5.20 -0.03 6.70 16 18 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 19 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.88 -26.33 13.29 55.43 0.74 -25.59 16 22 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 N -0.17 -2.79 12.39 32.83 0.41 -2.39 16 27 N -0.03 -0.40 12.88 60.35 0.78 0.38 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.10 8.07 -51.93 -0.42 -0.32 16 30 H 0.08 0.48 7.42 -51.93 -0.39 0.09 16 31 H 0.08 -0.20 5.77 -51.93 -0.30 -0.50 16 32 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.13 0.11 7.79 -51.93 -0.40 -0.29 16 35 H 0.14 -0.14 7.73 -51.93 -0.40 -0.54 16 36 H 0.21 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 380.32 15.07 5.73 5.73 Total: -1.00 -42.41 380.32 -4.31 -46.72 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.16 Total: -2.59 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 0.33 Total: 17.68 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.75 Total: -49.49 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.93 Total: -34.03 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -42.41 -4.31 -46.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138840050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.125 kcal (2) G-P(sol) polarization free energy of solvation -42.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds