Wall clock time and date at job start Tue Mar 31 2020 23:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00096 * 2 1 4 4 C 1.34783 * 119.99993 * 180.02562 * 2 1 3 5 5 O 1.21279 * 119.99774 * 359.97438 * 4 2 1 6 6 C 1.50705 * 119.99679 * 179.97438 * 4 2 1 7 7 N 1.46500 * 109.46576 * 179.97438 * 6 4 2 8 8 C 1.34784 * 126.58671 * 125.00421 * 7 6 4 9 9 C 1.36668 * 106.83741 * 180.23977 * 8 7 6 10 10 C 1.47378 * 125.78024 * 179.73707 * 9 8 7 11 11 O 1.21518 * 120.00371 * 359.97438 * 10 9 8 12 12 O 1.34755 * 119.99812 * 179.97438 * 10 9 8 13 13 C 1.45206 * 116.99856 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47009 * 180.02562 * 13 12 10 15 15 O 1.21289 * 119.99870 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00154 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00250 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47257 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99748 * 359.97438 * 18 17 16 20 20 C 1.37883 * 120.00167 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99636 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99920 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47096 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47178 * 119.99957 * 22 20 18 25 25 H 1.48500 * 109.46706 * 239.99519 * 22 20 18 26 26 N 1.34445 * 108.43336 * 359.59971 * 9 8 7 27 27 N 1.28756 * 109.51685 * 0.40680 * 26 9 8 28 28 H 1.08995 * 109.47205 * 269.99837 * 1 2 3 29 29 H 1.08999 * 109.47095 * 29.99523 * 1 2 3 30 30 H 1.09003 * 109.47069 * 149.99715 * 1 2 3 31 31 H 1.09001 * 109.46901 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46707 * 300.00215 * 3 2 1 33 33 H 1.08994 * 109.46830 * 60.00423 * 3 2 1 34 34 H 1.08994 * 109.47229 * 59.99942 * 6 4 2 35 35 H 1.08997 * 109.47055 * 299.99538 * 6 4 2 36 36 H 1.08002 * 126.57778 * 359.96682 * 8 7 6 37 37 H 1.08998 * 109.46776 * 299.99914 * 13 12 10 38 38 H 1.08993 * 109.47011 * 60.00269 * 13 12 10 39 39 H 0.96998 * 119.99662 * 359.97438 * 16 14 13 40 40 H 1.09005 * 109.46933 * 300.00089 * 17 16 14 41 41 H 1.09000 * 109.47121 * 59.99335 * 17 16 14 42 42 H 0.96996 * 119.99573 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 7 4.1342 -2.5484 -0.0010 8 6 4.9870 -3.0991 -0.8877 9 6 5.1618 -4.4016 -0.5123 10 6 6.0119 -5.3898 -1.2000 11 8 6.6334 -5.0698 -2.1939 12 8 6.0998 -6.6484 -0.7265 13 6 6.9553 -7.5683 -1.4547 14 6 6.9283 -8.9174 -0.7837 15 8 6.2541 -9.0870 0.2102 16 7 7.6534 -9.9355 -1.2879 17 6 7.6268 -11.2471 -0.6359 18 6 8.5156 -12.2015 -1.3908 19 1 9.0469 -11.8648 -2.2688 20 6 8.6498 -13.5049 -0.9614 21 7 8.0024 -13.9149 0.1075 22 14 9.7511 -14.6881 -1.8976 23 1 10.3617 -13.9856 -3.0547 24 1 10.8229 -15.1843 -0.9974 25 1 8.9438 -15.8351 -2.3852 26 7 4.4294 -4.6277 0.5922 27 7 3.8044 -3.5513 0.9217 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 3.2692 1.0695 -0.0005 32 1 1.9341 1.8403 -0.8900 33 1 1.9342 1.8402 0.8900 34 1 4.0096 -0.6535 0.8888 35 1 4.0089 -0.6532 -0.8911 36 1 5.4411 -2.6069 -1.7350 37 1 6.5957 -7.6652 -2.4791 38 1 7.9761 -7.1864 -1.4625 39 1 8.1923 -9.7999 -2.0829 40 1 7.9853 -11.1508 0.3890 41 1 6.6058 -11.6289 -0.6292 42 1 8.0971 -14.8317 0.4098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138840050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:19 Heat of formation + Delta-G solvation = -71.159912 kcal Electronic energy + Delta-G solvation = -27549.842358 eV Core-core repulsion = 23146.306504 eV Total energy + Delta-G solvation = -4403.535854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.42317 -41.54034 -40.92604 -40.28196 -37.57126 -36.72589 -36.17691 -35.78444 -34.40917 -32.39375 -31.03373 -30.46941 -28.65158 -28.34580 -26.73838 -25.42420 -24.43260 -23.58020 -22.18503 -21.64166 -20.73849 -19.46423 -19.04259 -18.51629 -18.22552 -17.91007 -17.71873 -17.26300 -16.95979 -16.91144 -16.64676 -16.50454 -15.99528 -15.94016 -15.70440 -14.86507 -14.71091 -14.57906 -14.39278 -14.13615 -13.90473 -13.69309 -13.61219 -13.40053 -13.37723 -13.14681 -12.91555 -12.89823 -12.74733 -12.38723 -12.20796 -11.96742 -11.91042 -11.89064 -11.45787 -11.00146 -10.90603 -10.82261 -10.51786 -9.92039 -9.79951 -8.28418 -6.45378 -0.07168 0.34476 0.78397 1.26676 1.35675 1.45409 1.46358 1.57292 1.60188 1.83779 1.91262 2.33426 2.52995 3.06870 3.08852 3.16651 3.45427 3.64708 3.75953 3.78278 3.96838 4.04931 4.09393 4.22983 4.28145 4.39179 4.49549 4.50541 4.77784 4.89665 4.97293 5.05422 5.13470 5.20675 5.22356 5.39338 5.43460 5.64732 5.82883 6.16886 6.39156 6.64259 6.79423 6.86885 6.94198 7.22090 7.38623 8.84179 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.038798 B = 0.001548 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.506979 B =18088.974421 C =18494.267021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.613 5.613 3 C 0.061 3.939 4 C 0.488 3.512 5 O -0.574 6.574 6 C 0.097 3.903 7 N -0.346 5.346 8 C 0.143 3.857 9 C -0.120 4.120 10 C 0.562 3.438 11 O -0.506 6.506 12 O -0.342 6.342 13 C 0.061 3.939 14 C 0.496 3.504 15 O -0.586 6.586 16 N -0.696 5.696 17 C 0.265 3.735 18 C -0.555 4.555 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.988 3.012 23 H -0.251 1.251 24 H -0.279 1.279 25 H -0.280 1.280 26 N -0.224 5.224 27 N -0.067 5.067 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.166 0.834 35 H 0.197 0.803 36 H 0.267 0.733 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.414 0.586 40 H -0.009 1.009 41 H -0.010 1.010 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.074 41.765 -7.353 42.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.347 5.347 3 C -0.080 4.080 4 C 0.274 3.726 5 O -0.452 6.452 6 C -0.025 4.025 7 N -0.129 5.129 8 C -0.014 4.014 9 C -0.257 4.257 10 C 0.405 3.595 11 O -0.394 6.394 12 O -0.256 6.256 13 C -0.015 4.015 14 C 0.282 3.718 15 O -0.467 6.467 16 N -0.348 5.348 17 C 0.142 3.858 18 C -0.593 4.593 19 H 0.107 0.893 20 C -0.197 4.197 21 N -0.571 5.571 22 Si 0.811 3.189 23 H -0.174 1.174 24 H -0.205 1.205 25 H -0.206 1.206 26 N -0.099 5.099 27 N -0.048 5.048 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.183 0.817 35 H 0.214 0.786 36 H 0.283 0.717 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.251 0.749 40 H 0.009 0.991 41 H 0.008 0.992 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.538 40.740 -5.581 41.998 hybrid contribution 0.621 -0.942 -0.886 1.435 sum -7.917 39.798 -6.467 41.090 Atomic orbital electron populations 1.21721 0.78605 1.03531 1.02255 1.47850 1.07783 1.06689 1.72372 1.22332 0.98123 0.83291 1.04280 1.21012 0.90713 0.83963 0.76865 1.90865 1.70712 1.33102 1.50557 1.22541 0.91395 0.76390 1.12143 1.50286 1.30677 1.12352 1.19594 1.23993 0.90806 0.91468 0.95142 1.20436 1.09693 0.94871 1.00652 1.19557 0.78296 0.80438 0.81190 1.90846 1.44091 1.79841 1.24662 1.86701 1.63040 1.21158 1.54704 1.22863 0.97345 0.85103 0.96231 1.20777 0.79765 0.86665 0.84578 1.90720 1.43400 1.84509 1.28039 1.45991 1.46839 1.10619 1.31373 1.18641 0.95583 0.79083 0.92456 1.21652 1.28477 0.95749 1.13398 0.89321 1.26101 0.97363 1.00348 0.95902 1.70158 1.43244 1.18339 1.25312 0.85063 0.77635 0.77705 0.78501 1.17377 1.20514 1.20601 1.74914 1.04741 1.18901 1.11357 1.82150 1.18922 0.90634 1.13111 0.92626 0.87762 0.93123 0.87478 0.89577 0.90390 0.81665 0.78584 0.71743 0.85093 0.84801 0.74938 0.99102 0.99214 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.48 127.77 1.34 1.93 16 2 N -0.61 -3.46 3.27 -871.88 -2.85 -6.32 16 3 C 0.06 -0.31 10.60 127.77 1.35 1.04 16 4 C 0.49 6.07 7.71 87.66 0.68 6.75 16 5 O -0.57 -15.19 15.31 -3.03 -0.05 -15.24 16 6 C 0.10 0.31 5.33 85.63 0.46 0.77 16 7 N -0.35 -5.43 3.41 -350.79 -1.20 -6.62 16 8 C 0.14 2.04 11.27 83.87 0.95 2.99 16 9 C -0.12 -3.20 7.02 40.78 0.29 -2.92 16 10 C 0.56 16.50 7.96 70.23 0.56 17.06 16 11 O -0.51 -13.59 16.65 19.78 0.33 -13.26 16 12 O -0.34 -12.32 9.76 -50.27 -0.49 -12.81 16 13 C 0.06 1.89 5.95 71.24 0.42 2.31 16 14 C 0.50 21.42 7.91 87.66 0.69 22.12 16 15 O -0.59 -32.34 16.50 15.74 0.26 -32.08 16 16 N -0.70 -30.06 5.55 -466.79 -2.59 -32.65 16 17 C 0.26 14.88 5.43 85.63 0.46 15.34 16 18 C -0.56 -30.42 9.28 25.60 0.24 -30.18 16 19 H 0.09 4.33 7.60 -2.91 -0.02 4.31 16 20 C 0.00 0.13 5.46 84.66 0.46 0.59 16 21 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 22 Si 0.99 42.73 29.54 68.60 2.03 44.76 16 23 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 26 N -0.22 -7.63 12.39 -50.04 -0.62 -8.25 16 27 N -0.07 -1.95 12.88 37.02 0.48 -1.47 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.10 0.08 8.07 -2.39 -0.02 0.06 16 30 H 0.05 0.68 7.42 -2.39 -0.02 0.66 16 31 H 0.11 -1.18 5.77 -2.39 -0.01 -1.19 16 32 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.17 -0.53 7.79 -2.39 -0.02 -0.55 16 35 H 0.20 -1.77 7.73 -2.39 -0.02 -1.78 16 36 H 0.27 0.45 8.06 -2.91 -0.02 0.43 16 37 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.41 14.14 8.32 -92.71 -0.77 13.36 16 40 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 41 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -104.15 380.32 3.79 -100.37 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: 0.31 Total: 2.71 kcal Atomic # 6 Polarization: 29.91 SS G_CDS: 7.90 Total: 37.81 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -6.50 Total: -112.25 kcal Atomic # 8 Polarization: -73.44 SS G_CDS: 0.05 Total: -73.39 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -104.15 3.79 -100.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138840050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.206 kcal (2) G-P(sol) polarization free energy of solvation -104.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds