Wall clock time and date at job start Tue Mar 31 2020 22:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47089 * 2 1 4 4 C 1.53003 * 109.47237 * 120.00239 * 2 1 3 5 5 S 1.81393 * 109.47089 * 294.99969 * 4 2 1 6 6 C 1.81399 * 101.92117 * 180.02562 * 5 4 2 7 7 O 1.42096 * 108.57861 * 65.51432 * 5 4 2 8 8 O 1.42105 * 108.57947 * 294.48505 * 5 4 2 9 9 C 1.50699 * 109.47081 * 240.00500 * 2 1 3 10 10 O 1.21287 * 119.99928 * 239.99731 * 9 2 1 11 11 N 1.34776 * 120.00360 * 59.99612 * 9 2 1 12 12 C 1.46499 * 120.00191 * 180.02562 * 11 9 2 13 13 H 1.08997 * 109.47123 * 35.00223 * 12 11 9 14 14 C 1.53002 * 109.47040 * 155.00125 * 12 11 9 15 15 C 1.50694 * 109.47048 * 294.99878 * 14 12 11 16 16 H 1.08006 * 119.99994 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00291 * 179.97438 * 15 14 12 18 18 N 1.31516 * 120.00024 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00585 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47047 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46816 * 120.00087 * 19 17 15 22 22 H 1.48491 * 109.47755 * 240.00423 * 19 17 15 23 23 C 1.50698 * 109.47052 * 275.00086 * 12 11 9 24 24 C 1.38239 * 119.99863 * 319.72563 * 23 12 11 25 25 C 1.38238 * 119.99897 * 179.80638 * 24 23 12 26 26 C 1.38237 * 119.99701 * 0.40748 * 25 24 23 27 27 C 1.38232 * 120.00498 * 359.84672 * 26 25 24 28 28 C 1.38231 * 119.99971 * 140.00291 * 23 12 11 29 29 H 1.09006 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47081 * 299.99556 * 1 2 3 31 31 H 1.08990 * 109.47565 * 59.99830 * 1 2 3 32 32 H 1.09000 * 109.46801 * 174.99863 * 4 2 1 33 33 H 1.09002 * 109.46832 * 55.00366 * 4 2 1 34 34 H 1.09001 * 109.47190 * 299.99865 * 6 5 4 35 35 H 1.09004 * 109.47089 * 59.99998 * 6 5 4 36 36 H 1.09004 * 109.47568 * 180.02562 * 6 5 4 37 37 H 0.97000 * 119.99765 * 359.97438 * 11 9 2 38 38 H 1.09000 * 109.47322 * 54.99874 * 14 12 11 39 39 H 1.08993 * 109.46804 * 174.99975 * 14 12 11 40 40 H 0.96998 * 120.00528 * 179.97438 * 18 17 15 41 41 H 1.08001 * 120.00130 * 359.97438 * 24 23 12 42 42 H 1.07994 * 120.00281 * 180.22503 * 25 24 23 43 43 H 1.08008 * 119.99940 * 179.83280 * 26 25 24 44 44 H 1.07998 * 120.00615 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00009 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 16 1.5601 0.2154 2.7266 6 6 2.2552 -0.8022 4.0577 7 8 0.1434 0.1965 2.8343 8 8 2.2382 1.4642 2.7110 9 6 2.0323 -0.7103 -1.2305 10 8 2.7296 -1.6964 -1.1193 11 7 1.7067 -0.2498 -2.4546 12 6 2.1945 -0.9407 -3.6508 13 1 2.2308 -2.0135 -3.4614 14 6 1.2504 -0.6612 -4.8219 15 6 -0.0993 -1.2667 -4.5345 16 1 -0.2671 -1.7974 -3.6088 17 6 -1.1204 -1.1423 -5.4525 18 7 -0.9163 -0.4957 -6.5794 19 14 -2.7933 -1.8934 -5.0966 20 1 -2.7635 -2.5628 -3.7715 21 1 -3.8240 -0.8243 -5.0876 22 1 -3.1225 -2.8895 -6.1475 23 6 3.5761 -0.4434 -3.9897 24 6 3.8750 0.9012 -3.8718 25 6 5.1435 1.3568 -4.1789 26 6 6.1107 0.4691 -4.6118 27 6 5.8104 -0.8746 -4.7348 28 6 4.5429 -1.3308 -4.4239 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.1263 -0.7995 1.2055 33 1 1.6054 -1.7199 1.2950 34 1 1.8147 -1.7985 4.0212 35 1 3.3353 -0.8776 3.9312 36 1 2.0331 -0.3422 5.0206 37 1 1.1486 0.5386 -2.5436 38 1 1.1448 0.4155 -4.9545 39 1 1.6596 -1.1009 -5.7313 40 1 -1.6345 -0.4084 -7.2255 41 1 3.1182 1.5953 -3.5372 42 1 5.3781 2.4066 -4.0833 43 1 7.1010 0.8254 -4.8543 44 1 6.5659 -1.5681 -5.0734 45 1 4.3083 -2.3806 -4.5199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153503817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:39 Heat of formation + Delta-G solvation = -93.750326 kcal Electronic energy + Delta-G solvation = -27648.488315 eV Core-core repulsion = 23757.973330 eV Total energy + Delta-G solvation = -3890.514985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.88047 -38.61506 -37.18931 -36.28272 -35.40519 -34.51289 -32.75861 -31.09416 -30.48348 -30.01229 -28.84571 -27.44973 -25.18802 -23.52829 -22.31906 -21.97091 -20.11832 -19.62756 -19.05871 -17.59392 -16.94339 -16.42622 -16.28276 -16.17119 -15.82736 -15.54425 -15.11258 -14.73846 -14.53580 -14.26357 -13.71072 -13.60728 -13.49958 -13.26986 -13.11996 -13.00040 -12.85090 -12.59248 -12.52184 -12.17621 -12.13814 -11.79255 -11.63717 -11.53924 -11.32319 -11.22818 -11.15729 -10.97261 -10.76935 -10.71577 -10.60991 -10.48827 -9.81685 -9.42568 -9.27132 -8.58323 -8.49606 -8.46714 -8.21563 -6.11794 -4.15554 -0.25787 1.74860 1.77453 2.50149 2.99748 3.24766 3.30630 3.33700 3.37336 3.71528 3.78306 4.20842 4.28773 4.37675 4.48084 4.49761 4.75159 4.91175 5.20003 5.23576 5.24746 5.26068 5.30849 5.32133 5.38953 5.51110 5.53637 5.80805 5.87940 5.90953 5.92319 6.13914 6.29708 6.32628 6.40687 6.54092 6.81997 6.82493 6.85081 7.07394 7.37528 7.46173 7.57824 7.84672 8.04766 8.22539 8.66242 8.90552 9.49963 10.98717 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007977 B = 0.004238 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3509.224146 B = 6604.882065 C = 9404.843290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 H 0.108 0.892 4 C -0.587 4.587 5 S 2.418 3.582 6 C -0.657 4.657 7 O -0.934 6.934 8 O -0.941 6.941 9 C 0.523 3.477 10 O -0.548 6.548 11 N -0.696 5.696 12 C 0.184 3.816 13 H 0.087 0.913 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.072 4.072 24 C -0.109 4.109 25 C -0.124 4.124 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.403 0.597 38 H 0.025 0.975 39 H 0.034 0.966 40 H 0.261 0.739 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.352 1.699 15.285 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.121 4.121 3 H 0.126 0.874 4 C -0.717 4.717 5 S 2.601 3.399 6 C -0.806 4.806 7 O -0.931 6.931 8 O -0.938 6.938 9 C 0.307 3.693 10 O -0.427 6.427 11 N -0.345 5.345 12 C 0.080 3.920 13 H 0.105 0.895 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.073 4.073 24 C -0.127 4.127 25 C -0.142 4.142 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.127 4.127 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.237 0.763 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.272 1.831 15.266 17.955 hybrid contribution -0.679 -0.843 -0.097 1.087 sum 8.593 0.988 15.169 17.462 Atomic orbital electron populations 1.22305 0.91321 1.04818 1.05159 1.20980 0.98603 1.00504 0.91969 0.87380 1.30167 1.12696 1.14270 1.14552 1.07898 0.76171 0.77246 0.78597 1.30262 1.13998 1.16818 1.19543 1.93590 1.27279 1.86872 1.85401 1.93603 1.76303 1.37878 1.85988 1.20066 0.80158 0.84584 0.84476 1.90645 1.38706 1.26505 1.86803 1.45949 1.51814 1.31773 1.04939 1.20273 0.89084 0.96576 0.86099 0.89484 1.19400 0.92821 0.97970 0.91208 1.21157 0.95415 1.35261 1.04052 0.92301 1.24982 0.98911 0.95185 0.94994 1.69963 1.32904 1.41661 1.08458 0.86556 0.84101 0.79080 0.78415 1.19693 1.20962 1.21012 1.20543 0.96317 0.93623 0.96823 1.20929 0.96367 0.95281 1.00117 1.21054 0.93708 0.99182 1.00296 1.21003 0.99029 0.93703 1.01546 1.21044 0.96620 0.95646 1.00784 1.21013 0.92840 0.99630 0.99212 0.90898 0.89346 0.90155 0.84259 0.84230 0.85201 0.85297 0.85352 0.76251 0.95674 0.94746 0.92889 0.86494 0.86663 0.86821 0.86617 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.73 37.16 0.32 -1.93 16 2 C -0.10 -1.24 2.72 -91.77 -0.25 -1.49 16 3 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 4 C -0.59 -5.72 4.61 37.16 0.17 -5.54 16 5 S 2.42 21.02 5.15 -107.50 -0.55 20.46 16 6 C -0.66 -3.33 10.62 101.05 1.07 -2.25 16 7 O -0.93 -10.96 15.46 -57.83 -0.89 -11.86 16 8 O -0.94 -11.40 18.10 -57.83 -1.05 -12.45 16 9 C 0.52 8.66 7.11 -10.99 -0.08 8.58 16 10 O -0.55 -10.60 15.58 5.55 0.09 -10.52 16 11 N -0.70 -12.03 3.93 -54.93 -0.22 -12.25 16 12 C 0.18 3.63 2.11 -69.08 -0.15 3.49 16 13 H 0.09 1.88 7.44 -51.93 -0.39 1.49 16 14 C 0.02 0.55 4.49 -27.89 -0.13 0.42 16 15 C -0.52 -13.45 8.84 -34.44 -0.30 -13.76 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 19 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.07 -1.30 4.91 -104.62 -0.51 -1.82 16 24 C -0.11 -1.79 9.32 -39.58 -0.37 -2.16 16 25 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 26 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 27 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 28 C -0.11 -1.85 9.67 -39.58 -0.38 -2.23 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.05 5.40 -51.93 -0.28 0.77 16 31 H 0.08 1.00 7.56 -51.93 -0.39 0.61 16 32 H 0.14 1.22 7.95 -51.92 -0.41 0.80 16 33 H 0.14 1.21 8.14 -51.92 -0.42 0.79 16 34 H 0.13 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.13 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.40 6.38 8.02 -40.82 -0.33 6.05 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.12 1.80 7.73 -52.49 -0.41 1.39 16 42 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 44 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.12 1.95 8.04 -52.49 -0.42 1.53 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -35.69 388.62 -9.76 -45.46 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.82 Total: 7.91 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -1.89 Total: -23.85 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.52 Total: -36.75 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -1.85 Total: -34.82 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 21.02 SS G_CDS: -0.55 Total: 20.46 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.69 -9.76 -45.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153503817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.295 kcal (2) G-P(sol) polarization free energy of solvation -35.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds