Wall clock time and date at job start Tue Mar 31 2020 22:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46957 * 2 1 4 4 C 1.53001 * 109.46983 * 119.99483 * 2 1 3 5 5 S 1.81401 * 109.47380 * 295.00162 * 4 2 1 6 6 C 1.81401 * 101.92278 * 180.02562 * 5 4 2 7 7 O 1.42098 * 108.57690 * 294.48732 * 5 4 2 8 8 O 1.42105 * 108.57949 * 65.51323 * 5 4 2 9 9 C 1.50695 * 109.47372 * 239.99459 * 2 1 3 10 10 O 1.21276 * 120.00241 * 240.00005 * 9 2 1 11 11 N 1.34777 * 119.99779 * 59.99954 * 9 2 1 12 12 C 1.46494 * 120.00188 * 180.02562 * 11 9 2 13 13 H 1.09000 * 109.47081 * 325.00162 * 12 11 9 14 14 C 1.53001 * 109.47302 * 205.00083 * 12 11 9 15 15 C 1.50701 * 109.47232 * 64.99671 * 14 12 11 16 16 H 1.08001 * 119.99717 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99813 * 179.97438 * 15 14 12 18 18 N 1.31516 * 119.99578 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47103 * 89.99714 * 19 17 15 21 21 H 1.48504 * 109.47065 * 209.99608 * 19 17 15 22 22 H 1.48497 * 109.47228 * 329.99836 * 19 17 15 23 23 C 1.50703 * 109.47581 * 84.99858 * 12 11 9 24 24 C 1.38235 * 120.00292 * 220.00303 * 23 12 11 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 12 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 39.97596 * 23 12 11 29 29 H 1.08995 * 109.46969 * 60.00341 * 1 2 3 30 30 H 1.09002 * 109.46879 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46690 * 300.00154 * 1 2 3 32 32 H 1.08999 * 109.47221 * 55.00548 * 4 2 1 33 33 H 1.09005 * 109.46797 * 175.00097 * 4 2 1 34 34 H 1.09004 * 109.46736 * 59.99939 * 6 5 4 35 35 H 1.09000 * 109.47188 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.47048 * 300.00311 * 6 5 4 37 37 H 0.97005 * 119.99889 * 359.97438 * 11 9 2 38 38 H 1.09007 * 109.47213 * 184.99910 * 14 12 11 39 39 H 1.08998 * 109.47120 * 304.99384 * 14 12 11 40 40 H 0.97007 * 120.00057 * 180.02562 * 18 17 15 41 41 H 1.08001 * 119.99730 * 359.97438 * 24 23 12 42 42 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 44 44 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.00455 * 0.02562 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 16 1.5601 0.2158 2.7267 6 6 2.2552 -0.8017 4.0579 7 8 2.2381 1.4644 2.7109 8 8 0.1433 0.1969 2.8343 9 6 2.0324 -0.7105 -1.2303 10 8 2.7297 -1.6965 -1.1190 11 7 1.7069 -0.2501 -2.4545 12 6 2.1947 -0.9411 -3.6506 13 1 3.1938 -1.3336 -3.4613 14 6 2.2464 0.0418 -4.8220 15 6 3.2680 1.1120 -4.5351 16 1 3.8250 1.0927 -3.6100 17 6 3.4922 2.1150 -5.4542 18 7 4.3841 3.0486 -5.2040 19 14 2.5293 2.1479 -7.0545 20 1 1.2855 2.9374 -6.8677 21 1 3.3571 2.7726 -8.1175 22 1 2.1799 0.7601 -7.4506 23 6 1.2644 -2.0774 -3.9890 24 6 1.7779 -3.2852 -4.4229 25 6 0.9246 -4.3276 -4.7328 26 6 -0.4422 -4.1625 -4.6080 27 6 -0.9556 -2.9551 -4.1726 28 6 -0.1023 -1.9119 -3.8649 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6055 -1.7197 1.2953 33 1 3.1264 -0.7993 1.2057 34 1 3.3352 -0.8772 3.9314 35 1 2.0338 -0.3411 5.0207 36 1 1.8146 -1.7981 4.0215 37 1 1.1488 0.5383 -2.5435 38 1 2.5240 -0.4911 -5.7315 39 1 1.2667 0.5009 -4.9546 40 1 4.5417 3.7545 -5.8504 41 1 2.8458 -3.4144 -4.5199 42 1 1.3256 -5.2712 -5.0723 43 1 -1.1091 -4.9755 -4.8543 44 1 -2.0234 -2.8259 -4.0754 45 1 -0.5035 -0.9683 -3.5259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153504039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:47 Heat of formation + Delta-G solvation = -89.414184 kcal Electronic energy + Delta-G solvation = -27695.028694 eV Core-core repulsion = 23804.701739 eV Total energy + Delta-G solvation = -3890.326956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.94889 -38.69784 -37.16149 -36.25515 -35.50689 -34.53842 -32.68665 -31.21952 -30.59284 -29.99452 -29.34819 -27.51929 -25.36767 -23.51594 -22.34050 -21.81177 -20.12765 -19.66875 -19.02951 -17.63845 -17.14113 -16.55040 -16.38391 -16.23725 -15.84707 -15.56869 -15.16306 -14.81872 -14.39859 -14.28474 -13.80186 -13.59012 -13.48104 -13.30541 -13.15331 -13.12660 -12.94126 -12.67249 -12.60895 -12.42521 -12.14460 -11.99691 -11.80225 -11.60735 -11.36767 -11.31960 -11.21424 -11.12307 -10.79656 -10.70924 -10.54077 -10.28044 -9.91137 -9.44776 -9.32040 -8.68367 -8.63980 -8.56002 -8.35056 -6.13620 -4.13997 -0.23103 1.62917 1.66117 2.52857 2.98870 3.23109 3.31757 3.32879 3.35136 3.67598 3.81115 4.10060 4.28908 4.35705 4.50763 4.51307 4.75879 4.89164 5.10844 5.13902 5.16897 5.20398 5.25165 5.34536 5.37113 5.40214 5.48216 5.69823 5.76589 5.78909 5.85801 5.99985 6.13412 6.18910 6.26403 6.37373 6.68957 6.71860 6.74576 6.88007 7.00742 7.25317 7.28694 7.61710 7.99289 8.40534 8.63174 8.91472 9.46924 10.99027 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009338 B = 0.003892 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.696640 B = 7192.299078 C = 9317.526797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.100 4.100 3 H 0.114 0.886 4 C -0.587 4.587 5 S 2.419 3.581 6 C -0.657 4.657 7 O -0.936 6.936 8 O -0.937 6.937 9 C 0.527 3.473 10 O -0.547 6.547 11 N -0.697 5.697 12 C 0.194 3.806 13 H 0.093 0.907 14 C -0.014 4.014 15 C -0.523 4.523 16 H 0.076 0.924 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.076 4.076 24 C -0.107 4.107 25 C -0.122 4.122 26 C -0.133 4.133 27 C -0.124 4.124 28 C -0.109 4.109 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.403 0.597 38 H 0.034 0.966 39 H 0.019 0.981 40 H 0.264 0.736 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 -11.167 12.461 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.123 4.123 3 H 0.132 0.868 4 C -0.717 4.717 5 S 2.601 3.399 6 C -0.806 4.806 7 O -0.933 6.933 8 O -0.934 6.934 9 C 0.311 3.689 10 O -0.425 6.425 11 N -0.346 5.346 12 C 0.090 3.910 13 H 0.111 0.889 14 C -0.051 4.051 15 C -0.561 4.561 16 H 0.094 0.906 17 C -0.130 4.130 18 N -0.534 5.534 19 Si 0.702 3.298 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.078 4.078 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.151 4.151 27 C -0.143 4.143 28 C -0.128 4.128 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.238 0.762 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.057 -10.902 12.533 18.920 hybrid contribution -0.127 -0.287 -1.036 1.083 sum -9.183 -11.189 11.497 18.485 Atomic orbital electron populations 1.22282 0.91766 1.04232 1.05031 1.20986 0.98196 1.01150 0.91934 0.86778 1.30165 1.12975 1.13993 1.14545 1.07898 0.76133 0.77281 0.78575 1.30260 1.14114 1.16682 1.19555 1.93625 1.76171 1.37704 1.85847 1.93574 1.27419 1.86951 1.85493 1.20030 0.80114 0.84396 0.84395 1.90644 1.38357 1.26696 1.86770 1.45868 1.52658 1.31159 1.04887 1.19991 0.95415 0.90111 0.85527 0.88927 1.19879 0.97888 0.94468 0.92885 1.21005 1.21077 1.07933 1.06094 0.90590 1.24982 0.94821 0.95236 0.97986 1.69904 1.33521 1.13893 1.36108 0.86857 0.80209 0.78776 0.83940 1.20217 1.21297 1.18965 1.20565 0.94662 0.95442 0.97095 1.21038 0.99949 0.92574 0.99035 1.21062 0.93596 0.98689 1.00695 1.21025 0.95287 0.97481 1.01345 1.21062 0.99263 0.93637 1.00294 1.20938 0.92987 0.98743 1.00106 0.90743 0.91183 0.89135 0.84432 0.84047 0.85213 0.85352 0.85304 0.76231 0.94791 0.96264 0.92578 0.86055 0.86515 0.86748 0.86613 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.73 37.16 0.32 -1.63 16 2 C -0.10 -1.28 2.72 -91.77 -0.25 -1.53 16 3 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 4 C -0.59 -5.81 4.61 37.16 0.17 -5.64 16 5 S 2.42 21.55 5.15 -107.50 -0.55 21.00 16 6 C -0.66 -3.45 10.62 101.05 1.07 -2.38 16 7 O -0.94 -12.22 18.10 -57.83 -1.05 -13.27 16 8 O -0.94 -10.66 15.46 -57.83 -0.89 -11.55 16 9 C 0.53 8.74 7.11 -10.99 -0.08 8.66 16 10 O -0.55 -10.58 15.58 5.56 0.09 -10.49 16 11 N -0.70 -11.91 3.92 -54.94 -0.22 -12.12 16 12 C 0.19 3.71 2.12 -69.08 -0.15 3.56 16 13 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 14 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 15 C -0.52 -13.80 9.39 -34.44 -0.32 -14.13 16 16 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 19 Si 0.87 20.67 27.47 -169.99 -4.67 16.00 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 23 C -0.08 -1.30 4.91 -104.62 -0.51 -1.82 16 24 C -0.11 -1.72 9.67 -39.59 -0.38 -2.11 16 25 C -0.12 -1.69 10.05 -39.59 -0.40 -2.08 16 26 C -0.13 -1.73 10.05 -39.58 -0.40 -2.12 16 27 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 28 C -0.11 -1.67 9.32 -39.58 -0.37 -2.04 16 29 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.98 5.40 -51.93 -0.28 0.70 16 32 H 0.14 1.14 8.14 -51.92 -0.42 0.72 16 33 H 0.14 1.33 7.96 -51.92 -0.41 0.92 16 34 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.40 6.26 8.02 -40.82 -0.33 5.93 16 38 H 0.03 0.77 7.20 -51.92 -0.37 0.39 16 39 H 0.02 0.41 7.57 -51.93 -0.39 0.01 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.12 1.87 8.04 -52.49 -0.42 1.45 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.11 1.18 8.06 -52.49 -0.42 0.75 16 44 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.12 1.64 7.72 -52.49 -0.41 1.23 16 LS Contribution 385.00 15.07 5.80 5.80 Total: -1.00 -36.76 385.00 -9.39 -46.15 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.78 Total: 8.07 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -1.88 Total: -23.83 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.56 Total: -37.88 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.85 Total: -35.31 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Atomic # 16 Polarization: 21.55 SS G_CDS: -0.55 Total: 21.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.76 -9.39 -46.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153504039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.264 kcal (2) G-P(sol) polarization free energy of solvation -36.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds