Wall clock time and date at job start Tue Mar 31 2020 23:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37098 * 119.99865 * 2 1 4 4 H 1.07999 * 119.99915 * 205.28657 * 3 2 1 5 5 C 1.38951 * 120.00369 * 25.27807 * 3 2 1 6 6 N 1.31413 * 119.99581 * 11.90026 * 5 3 2 7 7 Si 1.86793 * 120.00375 * 191.89721 * 5 3 2 8 8 H 1.48498 * 109.47088 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47273 * 119.99976 * 7 5 3 10 10 H 1.48501 * 109.47368 * 240.00212 * 7 5 3 11 11 C 1.34774 * 120.00284 * 179.97438 * 2 1 3 12 12 O 1.21286 * 120.00127 * 180.02562 * 11 2 1 13 13 C 1.50703 * 119.99863 * 0.02562 * 11 2 1 14 14 O 1.42893 * 109.47106 * 179.97438 * 13 11 2 15 15 C 1.35699 * 117.00017 * 180.02562 * 14 13 11 16 16 C 1.39045 * 119.90180 * 359.71981 * 15 14 13 17 17 C 1.37644 * 120.09758 * 179.72307 * 16 15 14 18 18 C 1.39858 * 119.90085 * 0.58002 * 17 16 15 19 19 C 1.47479 * 120.09811 * 179.68115 * 18 17 16 20 20 O 1.21590 * 120.00177 * 172.72584 * 19 18 17 21 21 C 1.47790 * 120.00044 * 352.72084 * 19 18 17 22 22 C 1.39657 * 120.15066 * 326.64623 * 21 19 18 23 23 C 1.37925 * 119.84549 * 179.74487 * 22 21 19 24 24 C 1.38385 * 120.15068 * 0.50203 * 23 22 21 25 25 C 1.38384 * 120.30576 * 359.76956 * 24 23 22 26 26 C 1.37927 * 120.15317 * 359.97438 * 25 24 23 27 27 C 1.39857 * 119.80771 * 359.69506 * 18 17 16 28 28 C 1.37652 * 119.90134 * 0.02562 * 27 18 17 29 29 H 1.08994 * 109.47241 * 266.68079 * 1 2 3 30 30 H 1.09005 * 109.46940 * 26.68185 * 1 2 3 31 31 H 1.09005 * 109.46860 * 146.67540 * 1 2 3 32 32 H 0.97000 * 119.99938 * 179.97438 * 6 5 3 33 33 H 1.09006 * 109.47097 * 59.99088 * 13 11 2 34 34 H 1.09000 * 109.46805 * 299.99576 * 13 11 2 35 35 H 1.08007 * 119.95316 * 359.97438 * 16 15 14 36 36 H 1.08002 * 120.05150 * 180.24816 * 17 16 15 37 37 H 1.08007 * 120.07343 * 359.97438 * 22 21 19 38 38 H 1.08001 * 119.92791 * 180.25702 * 23 22 21 39 39 H 1.08000 * 119.84745 * 179.74395 * 24 23 22 40 40 H 1.08004 * 119.92067 * 179.97438 * 25 24 23 41 41 H 1.08000 * 120.07612 * 179.97438 * 26 25 24 42 42 H 1.08001 * 120.05225 * 179.97438 * 27 18 17 43 43 H 1.08000 * 119.95546 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1529 1.2321 -0.3995 5 6 1.5556 2.3331 0.5138 6 7 0.4428 2.2413 1.2068 7 14 2.3375 4.0038 0.2197 8 1 3.5750 3.8365 -0.5839 9 1 1.3845 4.8739 -0.5152 10 1 2.6744 4.6292 1.5238 11 6 2.1390 -1.1671 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3855 -2.4723 0.0005 14 8 2.3141 -3.5584 0.0005 15 6 1.7954 -4.8123 0.0000 16 6 0.4167 -4.9922 0.0054 17 6 -0.1137 -6.2623 -0.0009 18 6 0.7363 -7.3729 -0.0005 19 6 0.1727 -8.7357 -0.0001 20 8 0.9055 -9.6968 -0.1330 21 6 -1.2830 -8.9333 0.1620 22 6 -2.0246 -8.0605 0.9611 23 6 -3.3837 -8.2477 1.1037 24 6 -4.0107 -9.3034 0.4655 25 6 -3.2809 -10.1754 -0.3233 26 6 -1.9221 -9.9969 -0.4788 27 6 2.1225 -7.1873 -0.0001 28 6 2.6444 -5.9135 0.0004 29 1 -0.3633 -0.0595 1.0259 30 1 -0.3633 0.9183 -0.4615 31 1 -0.3633 -0.8587 -0.5646 32 1 0.0276 3.0410 1.5658 33 1 0.7590 -2.5302 -0.8897 34 1 0.7586 -2.5298 0.8903 35 1 -0.2391 -4.1340 0.0104 36 1 -1.1848 -6.4011 -0.0008 37 1 -1.5357 -7.2387 1.4632 38 1 -3.9592 -7.5711 1.7180 39 1 -5.0744 -9.4478 0.5839 40 1 -3.7765 -10.9975 -0.8182 41 1 -1.3537 -10.6784 -1.0944 42 1 2.7827 -8.0421 0.0007 43 1 3.7147 -5.7692 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170627301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:08 Heat of formation + Delta-G solvation = -34.506639 kcal Electronic energy + Delta-G solvation = -27320.976983 eV Core-core repulsion = 23297.587046 eV Total energy + Delta-G solvation = -4023.389937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74983 -39.86893 -38.61751 -38.20831 -36.89234 -34.74554 -32.49800 -31.81482 -31.36669 -30.97846 -30.16681 -28.26151 -26.26062 -25.03959 -24.30844 -23.24080 -22.80511 -22.17587 -20.26014 -19.26735 -18.32892 -17.65799 -16.99782 -16.58199 -16.30254 -16.03690 -15.82529 -15.54158 -15.28705 -14.79574 -14.53909 -14.39578 -14.19160 -14.10726 -13.88284 -13.86045 -13.37182 -13.19927 -12.91343 -12.64538 -12.51862 -12.13964 -12.04190 -11.76582 -11.53842 -11.46084 -11.38583 -11.01280 -10.93703 -10.86110 -10.38531 -10.38281 -9.98534 -9.35927 -9.31116 -9.21791 -9.13635 -8.54716 -8.29783 -7.80480 -6.44324 -4.02181 0.25884 0.93616 0.98474 1.21064 2.38637 3.04899 3.08534 3.20908 3.29202 3.36202 3.67075 3.71070 3.73530 4.08619 4.46975 4.53875 4.57748 4.67622 4.69083 4.83986 4.88344 4.98313 5.02811 5.04375 5.12978 5.22248 5.33385 5.45176 5.48403 5.49450 5.59839 5.61565 5.82764 5.94596 5.97850 6.03985 6.06101 6.11666 6.18177 6.27182 6.49358 6.55161 6.67207 7.02772 7.31304 7.36902 7.46582 8.00570 8.34943 9.04911 9.24535 9.79411 10.60796 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019624 B = 0.002083 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.465042 B =13438.751950 C =14707.282125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.440 5.440 3 C -0.306 4.306 4 H 0.100 0.900 5 C 0.031 3.969 6 N -0.881 5.881 7 Si 0.929 3.071 8 H -0.267 1.267 9 H -0.280 1.280 10 H -0.280 1.280 11 C 0.446 3.554 12 O -0.566 6.566 13 C 0.048 3.952 14 O -0.278 6.278 15 C 0.177 3.823 16 C -0.228 4.228 17 C -0.037 4.037 18 C -0.219 4.219 19 C 0.445 3.555 20 O -0.457 6.457 21 C -0.152 4.152 22 C -0.086 4.086 23 C -0.128 4.128 24 C -0.096 4.096 25 C -0.129 4.129 26 C -0.069 4.069 27 C -0.017 4.017 28 C -0.167 4.167 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.024 0.976 32 H 0.269 0.731 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.823 -20.066 -1.567 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.161 5.161 3 C -0.433 4.433 4 H 0.118 0.882 5 C -0.172 4.172 6 N -0.520 5.520 7 Si 0.756 3.244 8 H -0.191 1.191 9 H -0.206 1.206 10 H -0.206 1.206 11 C 0.233 3.767 12 O -0.449 6.449 13 C -0.030 4.030 14 O -0.188 6.188 15 C 0.129 3.871 16 C -0.247 4.247 17 C -0.055 4.055 18 C -0.220 4.220 19 C 0.325 3.675 20 O -0.335 6.335 21 C -0.153 4.153 22 C -0.104 4.104 23 C -0.146 4.146 24 C -0.115 4.115 25 C -0.147 4.147 26 C -0.087 4.087 27 C -0.035 4.035 28 C -0.186 4.186 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.156 0.844 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.157 0.843 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.765 -20.326 -1.545 23.052 hybrid contribution -0.342 1.054 0.031 1.108 sum -11.107 -19.272 -1.515 22.295 Atomic orbital electron populations 1.21570 0.81073 1.00069 1.00988 1.43475 1.05505 1.04188 1.62928 1.19700 1.01348 0.83723 1.38567 0.88189 1.25396 0.96610 1.00337 0.94864 1.69978 1.19288 1.29926 1.32803 0.85809 0.79251 0.81048 0.78314 1.19098 1.20561 1.20611 1.19492 0.88170 0.83885 0.85162 1.90573 1.13488 1.86486 1.54368 1.22745 0.91878 0.86020 1.02397 1.86198 1.35364 1.11290 1.85973 1.19598 0.91973 0.85451 0.90084 1.21343 0.94129 0.98735 1.10487 1.21516 1.00089 0.91080 0.92823 1.20081 0.94388 0.93877 1.13626 1.20401 0.87410 0.88089 0.71592 1.90602 1.61958 1.43403 1.37499 1.20431 0.95041 0.97873 1.01924 1.21638 0.94193 0.97571 0.97020 1.21204 0.94566 0.98528 1.00342 1.21412 1.00199 0.94300 0.95543 1.21161 0.93927 1.00004 0.99633 1.21308 0.94695 0.95200 0.97530 1.21102 0.93863 0.96626 0.91956 1.20464 1.00555 0.89763 1.07808 0.92514 0.90358 0.95700 0.92110 0.90207 0.89867 0.84437 0.84235 0.84404 0.85171 0.85578 0.85406 0.85193 0.84314 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.19 8.45 59.85 0.51 2.70 16 2 N -0.44 -10.87 3.01 -122.19 -0.37 -11.24 16 3 C -0.31 -8.29 9.22 -14.93 -0.14 -8.43 16 4 H 0.10 2.86 7.46 -52.49 -0.39 2.46 16 5 C 0.03 0.81 5.06 -17.47 -0.09 0.72 16 6 N -0.88 -22.58 10.84 55.50 0.60 -21.98 16 7 Si 0.93 20.16 29.57 -169.99 -5.03 15.13 16 8 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 9 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 C 0.45 10.72 7.70 -10.99 -0.08 10.64 16 12 O -0.57 -15.99 16.22 -14.36 -0.23 -16.22 16 13 C 0.05 0.85 3.81 36.01 0.14 0.99 16 14 O -0.28 -5.11 9.66 -38.71 -0.37 -5.49 16 15 C 0.18 2.61 6.70 -38.98 -0.26 2.35 16 16 C -0.23 -2.77 9.01 -39.50 -0.36 -3.13 16 17 C -0.04 -0.40 8.14 -39.19 -0.32 -0.71 16 18 C -0.22 -2.58 5.80 -104.92 -0.61 -3.19 16 19 C 0.44 5.30 6.85 -31.91 -0.22 5.09 16 20 O -0.46 -6.51 16.81 5.29 0.09 -6.42 16 21 C -0.15 -1.51 5.53 -104.93 -0.58 -2.10 16 22 C -0.09 -0.71 7.59 -39.17 -0.30 -1.01 16 23 C -0.13 -0.88 10.03 -39.64 -0.40 -1.28 16 24 C -0.10 -0.62 10.04 -39.47 -0.40 -1.02 16 25 C -0.13 -0.91 10.03 -39.64 -0.40 -1.31 16 26 C -0.07 -0.62 9.61 -39.17 -0.38 -0.99 16 27 C -0.02 -0.21 9.59 -39.19 -0.38 -0.59 16 28 C -0.17 -2.24 9.97 -39.50 -0.39 -2.63 16 29 H 0.06 1.19 7.77 -51.93 -0.40 0.78 16 30 H 0.08 1.71 6.90 -51.93 -0.36 1.35 16 31 H 0.02 0.40 6.58 -51.93 -0.34 0.06 16 32 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 33 H 0.08 1.19 6.93 -51.93 -0.36 0.84 16 34 H 0.08 1.29 7.60 -51.93 -0.39 0.90 16 35 H 0.14 1.45 6.28 -52.48 -0.33 1.12 16 36 H 0.14 1.17 5.01 -52.49 -0.26 0.91 16 37 H 0.14 1.02 5.97 -52.48 -0.31 0.71 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.13 1.10 7.97 -52.49 -0.42 0.68 16 42 H 0.14 1.53 7.66 -52.49 -0.40 1.13 16 43 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -33.00 367.23 -9.22 -42.23 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.80 Total: 2.34 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -4.65 Total: -3.89 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.23 Total: -33.22 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.52 Total: -28.13 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.00 -9.22 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170627301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.722 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds