Wall clock time and date at job start Tue Mar 31 2020 22:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46491 * 109.47307 * 2 1 4 4 C 1.34781 * 120.00447 * 97.69178 * 3 2 1 5 5 O 1.21539 * 120.00607 * 180.82092 * 4 3 2 6 6 C 1.47889 * 119.99412 * 1.10023 * 4 3 2 7 7 C 1.39919 * 120.02776 * 334.16244 * 6 4 3 8 8 C 1.38330 * 120.35892 * 179.71719 * 7 6 4 9 9 C 1.37753 * 120.41057 * 0.55816 * 8 7 6 10 10 C 1.40748 * 120.03868 * 359.72480 * 9 8 7 11 11 C 1.41445 * 120.17697 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99688 * 334.70102 * 11 10 9 13 13 C 1.39934 * 120.00091 * 154.70805 * 11 10 9 14 14 N 1.30827 * 119.99883 * 343.08206 * 13 11 10 15 15 Si 1.86796 * 120.00283 * 163.09160 * 13 11 10 16 16 H 1.48507 * 109.46955 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47680 * 119.99323 * 15 13 11 18 18 H 1.48497 * 109.47149 * 240.00231 * 15 13 11 19 19 C 1.38993 * 120.02165 * 154.43819 * 6 4 3 20 20 C 1.46502 * 119.99986 * 277.69480 * 3 2 1 21 21 H 1.09000 * 109.47087 * 180.02562 * 20 3 2 22 22 C 1.53003 * 109.46851 * 299.99892 * 20 3 2 23 23 C 1.52995 * 109.47087 * 59.99805 * 20 3 2 24 24 S 1.81400 * 109.47058 * 65.00306 * 23 20 3 25 25 C 1.81397 * 101.92221 * 179.97438 * 24 23 20 26 26 O 1.42092 * 108.57965 * 294.48463 * 24 23 20 27 27 O 1.42100 * 108.57848 * 65.51195 * 24 23 20 28 28 H 1.09004 * 109.47009 * 59.99858 * 1 2 3 29 29 H 1.08999 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47061 * 300.00269 * 1 2 3 31 31 H 1.08994 * 109.47061 * 239.99731 * 2 1 3 32 32 H 1.09004 * 109.47009 * 120.00142 * 2 1 3 33 33 H 1.08002 * 119.81513 * 359.97438 * 7 6 4 34 34 H 1.07996 * 119.79348 * 180.26219 * 8 7 6 35 35 H 1.07993 * 119.98120 * 179.74414 * 9 8 7 36 36 H 0.96998 * 119.99792 * 179.97438 * 14 13 11 37 37 H 1.08001 * 120.20619 * 359.97438 * 19 6 4 38 38 H 1.09000 * 109.46964 * 60.00305 * 22 20 3 39 39 H 1.09003 * 109.46955 * 180.02562 * 22 20 3 40 40 H 1.08998 * 109.46768 * 299.99939 * 22 20 3 41 41 H 1.09005 * 109.47198 * 184.99983 * 23 20 3 42 42 H 1.08995 * 109.47398 * 305.00161 * 23 20 3 43 43 H 1.09003 * 109.46962 * 59.99838 * 25 24 23 44 44 H 1.08997 * 109.47359 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.47335 * 300.00280 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3903 1.9645 1.1567 5 8 2.7814 3.1152 1.1588 6 6 2.3285 1.2022 2.4225 7 6 1.4300 0.1380 2.5557 8 6 1.3704 -0.5833 3.7346 9 6 2.1866 -0.2553 4.7947 10 6 3.0926 0.8158 4.6813 11 6 3.9323 1.1548 5.7679 12 1 3.6359 0.9084 6.7767 13 6 5.1470 1.8095 5.5356 14 7 5.6670 1.8171 4.3351 15 14 6.0263 2.6726 6.9396 16 1 5.2361 2.5188 8.1876 17 1 7.3705 2.0699 7.1271 18 1 6.1709 4.1156 6.6206 19 6 3.1589 1.5462 3.4827 20 6 2.1024 2.1284 -1.2573 21 1 2.4852 3.1297 -1.0600 22 6 3.0451 1.4029 -2.2196 23 6 0.7108 2.2283 -1.8851 24 16 -0.3675 3.2157 -0.8113 25 6 -1.9293 3.2018 -1.7338 26 8 -0.5560 2.5137 0.4096 27 8 0.1254 4.5480 -0.7766 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 0.7823 -0.1243 1.7322 34 1 0.6765 -1.4057 3.8260 35 1 2.1314 -0.8205 5.7133 36 1 6.5088 2.2713 4.1741 37 1 3.8511 2.3695 3.3857 38 1 2.6627 0.4015 -2.4170 39 1 3.1080 1.9591 -3.1550 40 1 4.0365 1.3317 -1.7723 41 1 0.7863 2.7059 -2.8621 42 1 0.2916 1.2289 -2.0007 43 1 -2.2710 2.1738 -1.8542 44 1 -2.6798 3.7720 -1.1863 45 1 -1.7758 3.6509 -2.7150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171999843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:38 Heat of formation + Delta-G solvation = -38.318197 kcal Electronic energy + Delta-G solvation = -29102.215681 eV Core-core repulsion = 25214.104413 eV Total energy + Delta-G solvation = -3888.111267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.05649 -37.22395 -36.94329 -36.33642 -35.84225 -34.02756 -32.85878 -30.48762 -29.79839 -29.60786 -29.17363 -27.83279 -25.26936 -23.23871 -23.06162 -20.99804 -20.58708 -18.90755 -18.85939 -17.66532 -16.75050 -16.49765 -16.28004 -15.82144 -15.70213 -15.06343 -14.99682 -14.60302 -13.89960 -13.57246 -13.56269 -13.50176 -13.39400 -13.23472 -12.95115 -12.64981 -12.56178 -12.29845 -12.27852 -12.13930 -11.97167 -11.91276 -11.53289 -11.36861 -11.14647 -11.08912 -11.01653 -10.76229 -10.71698 -10.40854 -10.31364 -10.20353 -9.92855 -9.43398 -9.12628 -8.88781 -8.41832 -7.50086 -7.36816 -6.72505 -4.32529 -0.08091 2.33593 2.71716 2.87915 3.13169 3.18283 3.21240 3.29313 3.62819 3.84966 3.93693 3.98521 4.38203 4.51857 4.57462 4.68000 4.87646 4.99223 5.06488 5.23619 5.29322 5.37579 5.50978 5.53217 5.57568 5.63381 5.77270 5.88203 6.01805 6.07325 6.22049 6.24462 6.48525 6.66663 6.77754 6.92550 7.07552 7.14586 7.29904 7.48276 7.72048 7.85537 7.97038 8.07232 8.26506 8.59233 8.87958 8.91435 8.94944 10.22829 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016486 B = 0.003740 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.013270 B = 7485.379285 C = 7821.981213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.075 3.925 3 N -0.616 5.616 4 C 0.574 3.426 5 O -0.544 6.544 6 C -0.120 4.120 7 C -0.243 4.243 8 C -0.104 4.104 9 C -0.210 4.210 10 C 0.099 3.901 11 C -0.462 4.462 12 H 0.080 0.920 13 C 0.074 3.926 14 N -0.791 5.791 15 Si 0.909 3.091 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.271 1.271 19 C -0.095 4.095 20 C 0.151 3.849 21 H 0.114 0.886 22 C -0.151 4.151 23 C -0.637 4.637 24 S 2.410 3.590 25 C -0.666 4.666 26 O -0.908 6.908 27 O -0.932 6.932 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.282 0.718 37 H 0.130 0.870 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.482 -3.015 -16.046 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.047 4.047 3 N -0.351 5.351 4 C 0.368 3.632 5 O -0.421 6.421 6 C -0.124 4.124 7 C -0.262 4.262 8 C -0.122 4.122 9 C -0.229 4.229 10 C 0.096 3.904 11 C -0.491 4.491 12 H 0.098 0.902 13 C -0.144 4.144 14 N -0.416 5.416 15 Si 0.733 3.267 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.196 1.196 19 C -0.116 4.116 20 C 0.046 3.954 21 H 0.132 0.868 22 C -0.210 4.210 23 C -0.766 4.766 24 S 2.590 3.410 25 C -0.814 4.814 26 O -0.905 6.905 27 O -0.929 6.929 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.148 0.852 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.875 -1.893 -15.366 18.363 hybrid contribution 0.108 -0.081 -0.467 0.486 sum -9.767 -1.973 -15.833 18.708 Atomic orbital electron populations 1.22895 0.96406 1.01962 1.03686 1.22442 0.94203 0.82954 1.05097 1.47978 1.66833 1.14513 1.05754 1.19003 0.74411 0.86132 0.83696 1.90711 1.46995 1.17851 1.86564 1.19340 1.01444 0.98526 0.93049 1.21709 1.04471 1.00273 0.99773 1.20496 0.98785 0.98971 0.93944 1.21128 1.03295 1.00138 0.98388 1.17567 0.90966 0.89345 0.92473 1.19593 1.01855 1.33126 0.94523 0.90180 1.25921 0.97431 0.94338 0.96691 1.69790 1.16868 1.32780 1.22202 0.86254 0.79059 0.79672 0.81700 1.18388 1.20028 1.19610 1.21584 0.98358 0.99544 0.92067 1.20492 0.90809 0.99359 0.84733 0.86844 1.22062 0.99778 1.00634 0.98560 1.31059 1.12762 1.16880 1.15879 1.08312 0.78090 0.76610 0.77954 1.30413 1.23982 1.11241 1.15769 1.93670 1.84657 1.73842 1.38295 1.93609 1.78480 1.34463 1.86392 0.94147 0.91907 0.87236 0.91773 0.85473 0.84483 0.88984 0.88828 0.90735 0.85240 0.91921 0.91516 0.91242 0.84569 0.83784 0.85569 0.85402 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.30 7.12 37.16 0.26 -2.04 16 2 C 0.08 1.05 5.20 -4.05 -0.02 1.03 16 3 N -0.62 -10.51 1.58 -167.20 -0.26 -10.78 16 4 C 0.57 13.16 6.99 -12.31 -0.09 13.07 16 5 O -0.54 -14.20 15.93 5.33 0.08 -14.11 16 6 C -0.12 -2.96 5.58 -105.04 -0.59 -3.55 16 7 C -0.24 -5.23 7.36 -38.92 -0.29 -5.51 16 8 C -0.10 -2.25 10.01 -39.72 -0.40 -2.64 16 9 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16 10 C 0.10 2.69 5.57 -106.87 -0.59 2.09 16 11 C -0.46 -12.48 9.05 -37.73 -0.34 -12.82 16 12 H 0.08 2.07 7.90 -52.49 -0.41 1.65 16 13 C 0.07 1.92 5.15 -17.34 -0.09 1.84 16 14 N -0.79 -21.32 10.95 55.55 0.61 -20.71 16 15 Si 0.91 19.38 29.59 -169.99 -5.03 14.35 16 16 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 C -0.10 -2.64 8.23 -38.44 -0.32 -2.95 16 20 C 0.15 2.09 2.64 -67.93 -0.18 1.92 16 21 H 0.11 1.86 6.90 -51.93 -0.36 1.51 16 22 C -0.15 -1.63 9.15 37.16 0.34 -1.29 16 23 C -0.64 -6.00 4.66 37.16 0.17 -5.83 16 24 S 2.41 29.84 4.94 -107.50 -0.53 29.31 16 25 C -0.67 -4.59 10.62 101.05 1.07 -3.51 16 26 O -0.91 -14.61 12.87 -57.83 -0.74 -15.36 16 27 O -0.93 -15.82 18.10 -57.83 -1.05 -16.87 16 28 H 0.04 0.37 4.04 -51.93 -0.21 0.16 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.11 1.66 4.88 -51.93 -0.25 1.41 16 31 H 0.06 0.70 6.48 -51.93 -0.34 0.37 16 32 H 0.13 2.06 4.38 -51.93 -0.23 1.83 16 33 H 0.14 2.44 2.04 -52.49 -0.11 2.34 16 34 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 36 H 0.28 6.95 8.30 -40.82 -0.34 6.62 16 37 H 0.13 3.87 5.97 -52.49 -0.31 3.55 16 38 H 0.06 0.57 6.72 -51.93 -0.35 0.22 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.14 0.77 8.14 -51.92 -0.42 0.35 16 42 H 0.14 0.99 5.11 -51.93 -0.27 0.73 16 43 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.12 0.57 8.14 -51.92 -0.42 0.15 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -36.28 358.20 -8.73 -45.00 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.77 Total: 9.44 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -1.43 Total: -25.67 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.34 Total: -31.49 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -1.71 Total: -46.34 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Atomic # 16 Polarization: 29.84 SS G_CDS: -0.53 Total: 29.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.28 -8.73 -45.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171999843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.684 kcal (2) G-P(sol) polarization free energy of solvation -36.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds