Wall clock time and date at job start Tue Mar 31 2020 22:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47174 * 2 1 4 4 C 1.34774 * 119.99795 * 262.70803 * 3 2 1 5 5 O 1.21551 * 119.99606 * 181.44719 * 4 3 2 6 6 C 1.47880 * 120.00132 * 1.45041 * 4 3 2 7 7 C 1.39918 * 120.02480 * 20.53745 * 6 4 3 8 8 C 1.38328 * 120.35728 * 179.71360 * 7 6 4 9 9 C 1.37754 * 120.41239 * 0.55755 * 8 7 6 10 10 C 1.40758 * 120.03839 * 359.72112 * 9 8 7 11 11 C 1.41439 * 120.17810 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00088 * 29.27956 * 11 10 9 13 13 C 1.39937 * 119.99941 * 209.28433 * 11 10 9 14 14 N 1.30821 * 120.00077 * 10.69081 * 13 11 10 15 15 Si 1.86797 * 119.99929 * 190.69556 * 13 11 10 16 16 H 1.48504 * 109.47350 * 89.99848 * 15 13 11 17 17 H 1.48504 * 109.47176 * 209.99714 * 15 13 11 18 18 H 1.48501 * 109.47113 * 329.99696 * 15 13 11 19 19 C 1.38996 * 120.02528 * 200.80406 * 6 4 3 20 20 C 1.46502 * 119.99927 * 82.71031 * 3 2 1 21 21 H 1.08996 * 109.47272 * 179.97438 * 20 3 2 22 22 C 1.53006 * 109.47079 * 59.99860 * 20 3 2 23 23 C 1.52995 * 109.47131 * 300.00196 * 20 3 2 24 24 S 1.81398 * 109.47122 * 299.99867 * 23 20 3 25 25 C 1.81398 * 101.92647 * 180.02562 * 24 23 20 26 26 O 1.42099 * 108.57926 * 65.51477 * 24 23 20 27 27 O 1.42105 * 108.57971 * 294.49056 * 24 23 20 28 28 H 1.09004 * 109.47562 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47391 * 299.99773 * 1 2 3 30 30 H 1.08997 * 109.47170 * 60.00030 * 1 2 3 31 31 H 1.09003 * 109.47187 * 239.99746 * 2 1 3 32 32 H 1.09003 * 109.46788 * 120.00123 * 2 1 3 33 33 H 1.07994 * 119.82110 * 359.96907 * 7 6 4 34 34 H 1.07997 * 119.80011 * 180.25447 * 8 7 6 35 35 H 1.07999 * 119.98309 * 179.74118 * 9 8 7 36 36 H 0.97001 * 120.00351 * 180.02562 * 14 13 11 37 37 H 1.08005 * 120.20116 * 359.97438 * 19 6 4 38 38 H 1.09007 * 109.46954 * 60.00125 * 22 20 3 39 39 H 1.08992 * 109.47066 * 179.97438 * 22 20 3 40 40 H 1.08996 * 109.47175 * 300.00189 * 22 20 3 41 41 H 1.09005 * 109.47443 * 180.02562 * 23 20 3 42 42 H 1.09004 * 109.47400 * 59.99935 * 23 20 3 43 43 H 1.08997 * 109.46940 * 300.00440 * 25 24 23 44 44 H 1.09008 * 109.46782 * 59.99456 * 25 24 23 45 45 H 1.08992 * 109.47217 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3826 1.9671 -1.1578 5 8 2.8125 3.1041 -1.1545 6 6 2.2591 1.2269 -2.4320 7 6 1.3971 0.1286 -2.5229 8 6 1.2719 -0.5652 -3.7131 9 6 2.0025 -0.1902 -4.8190 10 6 2.8792 0.9085 -4.7450 11 6 3.6304 1.2964 -5.8788 12 1 3.2427 1.1169 -6.8707 13 6 4.8762 1.9126 -5.7154 14 7 5.4413 1.9429 -4.5360 15 14 5.7320 2.6921 -7.1815 16 1 5.3214 4.1146 -7.2957 17 1 7.2032 2.6151 -6.9942 18 1 5.3520 1.9661 -8.4200 19 6 3.0035 1.6183 -3.5386 20 6 2.1107 2.1255 1.2585 21 1 2.4922 3.1272 1.0610 22 6 3.0598 1.3978 2.2129 23 6 0.7233 2.2240 1.8958 24 16 -0.4020 3.0866 0.7644 25 6 -1.9522 3.0883 1.7064 26 8 -0.5781 2.2864 -0.3965 27 8 0.0415 4.4291 0.6209 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 0.8233 -0.1767 -1.6604 34 1 0.6007 -1.4091 -3.7744 35 1 1.9025 -0.7394 -5.7436 36 1 6.3046 2.3704 -4.4226 37 1 3.6731 2.4631 -3.4719 38 1 4.0483 1.3277 1.7588 39 1 3.1289 1.9518 3.1490 40 1 2.6787 0.3959 2.4104 41 1 0.7919 2.7781 2.8320 42 1 0.3422 1.2220 2.0934 43 1 -2.2547 2.0612 1.9099 44 1 -1.8044 3.6169 2.6483 45 1 -2.7286 3.5883 1.1275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171999844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:42 Heat of formation + Delta-G solvation = -25.502667 kcal Electronic energy + Delta-G solvation = -29202.183100 eV Core-core repulsion = 25314.627556 eV Total energy + Delta-G solvation = -3887.555544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.10599 -37.22256 -36.98825 -36.33030 -35.81073 -34.03778 -32.84415 -30.47614 -29.77488 -29.57655 -29.15390 -27.84043 -25.24330 -23.24487 -23.05473 -20.99415 -20.57951 -18.93068 -18.87366 -17.64324 -16.76287 -16.50550 -16.27474 -15.79229 -15.71144 -15.11166 -14.98314 -14.56363 -13.87361 -13.64951 -13.55611 -13.46065 -13.38275 -13.17451 -12.93670 -12.65482 -12.56661 -12.35955 -12.25680 -12.13054 -11.97109 -11.88371 -11.53099 -11.24311 -11.13429 -11.08109 -10.98562 -10.73485 -10.60840 -10.33986 -10.24400 -10.09003 -9.88870 -9.38593 -9.15746 -8.85198 -8.42129 -7.49581 -7.30898 -6.65057 -4.32486 -0.07077 2.31744 2.73037 2.90663 3.14401 3.17263 3.22498 3.29577 3.64107 3.87044 3.94517 4.01308 4.38984 4.52046 4.58372 4.73111 4.89173 5.00739 5.09124 5.23732 5.29427 5.38510 5.52272 5.55329 5.58076 5.64571 5.77960 5.90893 6.01719 6.07776 6.21619 6.26243 6.50981 6.75005 6.82305 6.94620 7.10091 7.14699 7.32625 7.49902 7.72247 7.85190 7.97723 8.09416 8.28666 8.61276 8.89602 8.93474 8.96370 10.29975 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.003759 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.895122 B = 7446.029335 C = 7734.095407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.071 3.929 3 N -0.618 5.618 4 C 0.572 3.428 5 O -0.542 6.542 6 C -0.124 4.124 7 C -0.244 4.244 8 C -0.108 4.108 9 C -0.204 4.204 10 C 0.097 3.903 11 C -0.464 4.464 12 H 0.079 0.921 13 C 0.072 3.928 14 N -0.800 5.800 15 Si 0.912 3.088 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.088 4.088 20 C 0.151 3.849 21 H 0.114 0.886 22 C -0.151 4.151 23 C -0.631 4.631 24 S 2.404 3.596 25 C -0.666 4.666 26 O -0.905 6.905 27 O -0.932 6.932 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.063 0.937 33 H 0.147 0.853 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.281 0.719 37 H 0.132 0.868 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.190 -3.321 16.412 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.051 4.051 3 N -0.353 5.353 4 C 0.365 3.635 5 O -0.420 6.420 6 C -0.127 4.127 7 C -0.262 4.262 8 C -0.126 4.126 9 C -0.224 4.224 10 C 0.095 3.905 11 C -0.494 4.494 12 H 0.097 0.903 13 C -0.145 4.145 14 N -0.425 5.425 15 Si 0.737 3.263 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.108 4.108 20 C 0.046 3.954 21 H 0.132 0.868 22 C -0.210 4.210 23 C -0.761 4.761 24 S 2.585 3.415 25 C -0.813 4.813 26 O -0.902 6.902 27 O -0.929 6.929 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.164 0.836 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.577 -2.248 15.695 18.523 hybrid contribution 0.142 -0.067 0.472 0.498 sum -9.435 -2.315 16.168 18.862 Atomic orbital electron populations 1.23060 0.95982 1.01448 1.04167 1.22582 0.94518 0.82938 1.05038 1.48019 1.67011 1.14614 1.05635 1.19024 0.74821 0.85825 0.83810 1.90718 1.45747 1.18677 1.86830 1.19354 1.02395 0.98392 0.92557 1.22020 1.05039 0.99617 0.99539 1.20522 0.99287 0.99139 0.93654 1.21204 1.04184 0.99379 0.97642 1.17578 0.90644 0.89459 0.92801 1.19546 1.01439 1.34481 0.93956 0.90326 1.25894 0.97515 0.94026 0.97044 1.69752 1.15421 1.33721 1.23656 0.86249 0.78221 0.80217 0.81610 1.19293 1.20349 1.18728 1.21651 0.98227 0.99462 0.91445 1.20500 0.90851 0.99428 0.84655 0.86765 1.22061 0.99732 1.00586 0.98641 1.30946 1.13130 1.15483 1.16492 1.08554 0.78156 0.76383 0.78446 1.30405 1.23836 1.11106 1.15997 1.93715 1.84812 1.68660 1.42966 1.93607 1.79837 1.34327 1.85154 0.92355 0.94689 0.85869 0.85209 0.91901 0.83612 0.88950 0.88800 0.90794 0.85039 0.91267 0.91541 0.91950 0.84636 0.84119 0.85610 0.85913 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 6.88 37.15 0.26 -2.03 16 2 C 0.07 0.99 5.19 -4.04 -0.02 0.97 16 3 N -0.62 -10.50 1.51 -167.24 -0.25 -10.75 16 4 C 0.57 13.08 7.04 -12.31 -0.09 12.99 16 5 O -0.54 -14.15 15.85 5.32 0.08 -14.07 16 6 C -0.12 -3.04 5.65 -105.04 -0.59 -3.64 16 7 C -0.24 -5.20 7.21 -38.92 -0.28 -5.48 16 8 C -0.11 -2.33 10.01 -39.72 -0.40 -2.73 16 9 C -0.20 -4.96 9.78 -38.81 -0.38 -5.34 16 10 C 0.10 2.66 5.54 -106.87 -0.59 2.07 16 11 C -0.46 -12.63 9.06 -37.73 -0.34 -12.97 16 12 H 0.08 2.04 7.87 -52.49 -0.41 1.62 16 13 C 0.07 1.88 5.25 -17.35 -0.09 1.79 16 14 N -0.80 -21.78 10.87 55.55 0.60 -21.17 16 15 Si 0.91 19.58 29.57 -169.99 -5.03 14.55 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 19 C -0.09 -2.43 8.19 -38.44 -0.31 -2.75 16 20 C 0.15 2.07 2.70 -67.93 -0.18 1.89 16 21 H 0.11 1.86 6.90 -51.93 -0.36 1.50 16 22 C -0.15 -1.62 9.15 37.16 0.34 -1.28 16 23 C -0.63 -5.91 4.66 37.16 0.17 -5.73 16 24 S 2.40 29.65 4.80 -107.50 -0.52 29.14 16 25 C -0.67 -4.61 10.62 101.05 1.07 -3.54 16 26 O -0.90 -14.20 11.72 -57.83 -0.68 -14.88 16 27 O -0.93 -16.01 18.10 -57.83 -1.05 -17.05 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.03 0.32 3.92 -51.93 -0.20 0.12 16 30 H 0.12 1.90 4.41 -51.93 -0.23 1.67 16 31 H 0.13 2.09 4.34 -51.93 -0.23 1.86 16 32 H 0.06 0.68 6.47 -51.93 -0.34 0.35 16 33 H 0.15 2.57 1.85 -52.54 -0.10 2.47 16 34 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 36 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 37 H 0.13 3.96 5.98 -52.48 -0.31 3.64 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.56 6.72 -51.93 -0.35 0.21 16 41 H 0.14 0.78 8.14 -51.92 -0.42 0.35 16 42 H 0.14 0.94 5.60 -51.92 -0.29 0.65 16 43 H 0.13 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.12 0.58 8.14 -51.92 -0.42 0.16 16 45 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -36.27 356.13 -8.66 -44.93 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.76 Total: 9.71 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -1.44 Total: -25.77 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.35 Total: -31.93 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -1.64 Total: -46.00 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Atomic # 16 Polarization: 29.65 SS G_CDS: -0.52 Total: 29.14 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.27 -8.66 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171999844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.425 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds