Wall clock time and date at job start Tue Mar 31 2020 22:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47174 * 2 1 4 4 C 1.34774 * 119.99795 * 262.70803 * 3 2 1 5 5 O 1.21551 * 119.99606 * 181.44719 * 4 3 2 6 6 C 1.47880 * 120.00132 * 1.45041 * 4 3 2 7 7 C 1.39918 * 120.02480 * 20.53745 * 6 4 3 8 8 C 1.38328 * 120.35728 * 179.71360 * 7 6 4 9 9 C 1.37754 * 120.41239 * 0.55755 * 8 7 6 10 10 C 1.40758 * 120.03839 * 359.72112 * 9 8 7 11 11 C 1.41439 * 120.17810 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00088 * 29.27956 * 11 10 9 13 13 C 1.39937 * 119.99941 * 209.28433 * 11 10 9 14 14 N 1.30821 * 120.00077 * 10.69081 * 13 11 10 15 15 Si 1.86797 * 119.99929 * 190.69556 * 13 11 10 16 16 H 1.48504 * 109.47350 * 89.99848 * 15 13 11 17 17 H 1.48504 * 109.47176 * 209.99714 * 15 13 11 18 18 H 1.48501 * 109.47113 * 329.99696 * 15 13 11 19 19 C 1.38996 * 120.02528 * 200.80406 * 6 4 3 20 20 C 1.46502 * 119.99927 * 82.71031 * 3 2 1 21 21 H 1.08996 * 109.47272 * 179.97438 * 20 3 2 22 22 C 1.53006 * 109.47079 * 59.99860 * 20 3 2 23 23 C 1.52995 * 109.47131 * 300.00196 * 20 3 2 24 24 S 1.81398 * 109.47122 * 299.99867 * 23 20 3 25 25 C 1.81398 * 101.92647 * 180.02562 * 24 23 20 26 26 O 1.42099 * 108.57926 * 65.51477 * 24 23 20 27 27 O 1.42105 * 108.57971 * 294.49056 * 24 23 20 28 28 H 1.09004 * 109.47562 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47391 * 299.99773 * 1 2 3 30 30 H 1.08997 * 109.47170 * 60.00030 * 1 2 3 31 31 H 1.09003 * 109.47187 * 239.99746 * 2 1 3 32 32 H 1.09003 * 109.46788 * 120.00123 * 2 1 3 33 33 H 1.07994 * 119.82110 * 359.96907 * 7 6 4 34 34 H 1.07997 * 119.80011 * 180.25447 * 8 7 6 35 35 H 1.07999 * 119.98309 * 179.74118 * 9 8 7 36 36 H 0.97001 * 120.00351 * 180.02562 * 14 13 11 37 37 H 1.08005 * 120.20116 * 359.97438 * 19 6 4 38 38 H 1.09007 * 109.46954 * 60.00125 * 22 20 3 39 39 H 1.08992 * 109.47066 * 179.97438 * 22 20 3 40 40 H 1.08996 * 109.47175 * 300.00189 * 22 20 3 41 41 H 1.09005 * 109.47443 * 180.02562 * 23 20 3 42 42 H 1.09004 * 109.47400 * 59.99935 * 23 20 3 43 43 H 1.08997 * 109.46940 * 300.00440 * 25 24 23 44 44 H 1.09008 * 109.46782 * 59.99456 * 25 24 23 45 45 H 1.08992 * 109.47217 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3826 1.9671 -1.1578 5 8 2.8125 3.1041 -1.1545 6 6 2.2591 1.2269 -2.4320 7 6 1.3971 0.1286 -2.5229 8 6 1.2719 -0.5652 -3.7131 9 6 2.0025 -0.1902 -4.8190 10 6 2.8792 0.9085 -4.7450 11 6 3.6304 1.2964 -5.8788 12 1 3.2427 1.1169 -6.8707 13 6 4.8762 1.9126 -5.7154 14 7 5.4413 1.9429 -4.5360 15 14 5.7320 2.6921 -7.1815 16 1 5.3214 4.1146 -7.2957 17 1 7.2032 2.6151 -6.9942 18 1 5.3520 1.9661 -8.4200 19 6 3.0035 1.6183 -3.5386 20 6 2.1107 2.1255 1.2585 21 1 2.4922 3.1272 1.0610 22 6 3.0598 1.3978 2.2129 23 6 0.7233 2.2240 1.8958 24 16 -0.4020 3.0866 0.7644 25 6 -1.9522 3.0883 1.7064 26 8 -0.5781 2.2864 -0.3965 27 8 0.0415 4.4291 0.6209 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 0.8233 -0.1767 -1.6604 34 1 0.6007 -1.4091 -3.7744 35 1 1.9025 -0.7394 -5.7436 36 1 6.3046 2.3704 -4.4226 37 1 3.6731 2.4631 -3.4719 38 1 4.0483 1.3277 1.7588 39 1 3.1289 1.9518 3.1490 40 1 2.6787 0.3959 2.4104 41 1 0.7919 2.7781 2.8320 42 1 0.3422 1.2220 2.0934 43 1 -2.2547 2.0612 1.9099 44 1 -1.8044 3.6169 2.6483 45 1 -2.7286 3.5883 1.1275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171999844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:41 Heat of formation + Delta-G solvation = -52.409622 kcal Electronic energy + Delta-G solvation = -29203.349873 eV Core-core repulsion = 25314.627556 eV Total energy + Delta-G solvation = -3888.722317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.62377 -38.97699 -38.19868 -37.73210 -36.83110 -35.75821 -34.26992 -31.73088 -31.45085 -31.03822 -30.28412 -28.67226 -27.19157 -24.82938 -24.16550 -22.86017 -22.02586 -20.39761 -19.82712 -19.41322 -18.04100 -17.64771 -17.55482 -17.23420 -16.87265 -16.75680 -16.48376 -16.00587 -15.44811 -15.06526 -14.69613 -14.60352 -14.32188 -14.28118 -14.11873 -13.98145 -13.88847 -13.80537 -13.42211 -13.34297 -13.15905 -12.96298 -12.94377 -12.87304 -12.76774 -12.43354 -12.25433 -12.01569 -11.90060 -11.81837 -11.53906 -11.49806 -11.22975 -11.12206 -11.05787 -10.58605 -9.81492 -9.37367 -9.24087 -8.59721 -6.38114 -0.90996 0.43916 1.03351 1.33926 1.46407 1.49135 1.91275 1.99190 2.07466 2.19916 2.79448 2.83725 3.14737 3.48989 3.68751 3.78525 3.93213 4.03783 4.07687 4.18219 4.24519 4.40008 4.49603 4.50353 4.51988 4.70058 4.73828 4.81686 4.89544 4.92063 4.96250 5.07707 5.11531 5.17005 5.24253 5.27252 5.35056 5.55433 5.64914 5.87059 5.89587 5.98998 6.08480 6.29874 6.37549 6.64798 6.91075 6.97954 7.24039 8.37154 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.003759 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.895122 B = 7446.029335 C = 7734.095407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 N -0.603 5.603 4 C 0.562 3.438 5 O -0.596 6.596 6 C -0.141 4.141 7 C -0.220 4.220 8 C -0.107 4.107 9 C -0.209 4.209 10 C 0.063 3.937 11 C -0.503 4.503 12 H 0.081 0.919 13 C 0.025 3.975 14 N -0.841 5.841 15 Si 0.986 3.014 16 H -0.270 1.270 17 H -0.268 1.268 18 H -0.250 1.250 19 C -0.131 4.131 20 C 0.133 3.867 21 H 0.073 0.927 22 C -0.146 4.146 23 C -0.610 4.610 24 S 2.363 3.637 25 C -0.631 4.631 26 O -0.954 6.954 27 O -1.006 7.006 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.193 0.807 34 H 0.142 0.858 35 H 0.108 0.892 36 H 0.283 0.717 37 H 0.091 0.909 38 H 0.041 0.959 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.183 0.817 42 H 0.184 0.816 43 H 0.164 0.836 44 H 0.154 0.846 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.145 -6.343 20.129 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.062 4.062 3 N -0.335 5.335 4 C 0.354 3.646 5 O -0.479 6.479 6 C -0.144 4.144 7 C -0.238 4.238 8 C -0.125 4.125 9 C -0.229 4.229 10 C 0.061 3.939 11 C -0.534 4.534 12 H 0.099 0.901 13 C -0.188 4.188 14 N -0.468 5.468 15 Si 0.807 3.193 16 H -0.195 1.195 17 H -0.192 1.192 18 H -0.173 1.173 19 C -0.152 4.152 20 C 0.029 3.971 21 H 0.091 0.909 22 C -0.204 4.204 23 C -0.741 4.741 24 S 2.553 3.447 25 C -0.784 4.784 26 O -0.951 6.951 27 O -1.003 7.003 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.209 0.791 34 H 0.160 0.840 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.060 0.940 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.200 0.800 42 H 0.201 0.799 43 H 0.183 0.817 44 H 0.173 0.827 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.540 -5.311 19.408 23.710 hybrid contribution 0.849 0.752 -0.397 1.202 sum -11.691 -4.559 19.011 22.779 Atomic orbital electron populations 1.23033 0.93811 1.03784 1.04538 1.22825 0.96327 0.80949 1.06144 1.48013 1.64829 1.15734 1.04971 1.18929 0.75155 0.85221 0.85297 1.90675 1.48500 1.20906 1.87782 1.19758 1.02260 0.99482 0.92870 1.22741 1.02826 0.97117 1.01142 1.21069 0.98896 1.00091 0.92446 1.21519 1.03486 0.98495 0.99358 1.17921 0.92131 0.90880 0.92940 1.19831 1.02598 1.36812 0.94141 0.90077 1.26831 0.97938 0.94017 0.99977 1.69882 1.15886 1.35063 1.25937 0.85151 0.77295 0.78802 0.78100 1.19475 1.19223 1.17280 1.21436 1.00226 0.99848 0.93649 1.20815 0.94640 0.97646 0.83956 0.90856 1.22071 0.97459 1.02277 0.98605 1.30752 1.08849 1.17968 1.16482 1.09049 0.80714 0.75122 0.79779 1.30079 1.18253 1.14328 1.15704 1.93684 1.86077 1.68691 1.46614 1.93532 1.82079 1.37711 1.86959 0.88726 0.91233 0.89063 0.87766 0.87179 0.79072 0.83994 0.87352 0.90711 0.89119 0.93951 0.88369 0.88876 0.79982 0.79885 0.81735 0.82747 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.75 6.88 71.98 0.50 -3.25 16 2 C 0.06 1.42 5.19 86.38 0.45 1.87 16 3 N -0.60 -20.23 1.51 -801.29 -1.21 -21.43 16 4 C 0.56 27.41 7.04 86.80 0.61 28.02 16 5 O -0.60 -34.49 15.85 -3.88 -0.06 -34.55 16 6 C -0.14 -7.33 5.65 -20.14 -0.11 -7.44 16 7 C -0.22 -9.36 7.21 22.70 0.16 -9.19 16 8 C -0.11 -4.50 10.01 22.18 0.22 -4.28 16 9 C -0.21 -10.37 9.78 22.77 0.22 -10.15 16 10 C 0.06 3.69 5.54 -21.32 -0.12 3.57 16 11 C -0.50 -29.35 9.06 23.47 0.21 -29.14 16 12 H 0.08 4.46 7.87 -2.91 -0.02 4.44 16 13 C 0.02 1.38 5.25 85.26 0.45 1.83 16 14 N -0.84 -49.84 10.87 21.82 0.24 -49.60 16 15 Si 0.99 42.55 29.57 68.60 2.03 44.58 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 19 C -0.13 -7.94 8.19 23.01 0.19 -7.75 16 20 C 0.13 3.48 2.70 44.99 0.12 3.60 16 21 H 0.07 2.54 6.90 -2.39 -0.02 2.53 16 22 C -0.15 -2.63 9.15 71.98 0.66 -1.97 16 23 C -0.61 -8.67 4.66 71.98 0.34 -8.34 16 24 S 2.36 54.76 4.80 -56.49 -0.27 54.49 16 25 C -0.63 -5.43 10.62 113.37 1.20 -4.22 16 26 O -0.95 -29.47 11.72 -127.37 -1.49 -30.96 16 27 O -1.01 -36.37 18.10 -127.37 -2.30 -38.68 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 0.84 3.92 -2.38 -0.01 0.83 16 30 H 0.09 2.55 4.41 -2.39 -0.01 2.54 16 31 H 0.10 3.11 4.34 -2.39 -0.01 3.09 16 32 H 0.11 1.73 6.47 -2.39 -0.02 1.72 16 33 H 0.19 6.29 1.85 -2.96 -0.01 6.29 16 34 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 35 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 36 H 0.28 15.45 8.30 -92.71 -0.77 14.68 16 37 H 0.09 6.14 5.98 -2.91 -0.02 6.13 16 38 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.09 1.11 6.72 -2.39 -0.02 1.10 16 41 H 0.18 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.18 1.02 5.60 -2.39 -0.01 1.00 16 43 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.13 1.24 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -96.57 356.13 3.06 -93.51 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 1.03 Total: 29.49 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 5.10 Total: -46.86 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -0.97 Total: -71.04 kcal Atomic # 8 Polarization: -100.32 SS G_CDS: -3.86 Total: -104.18 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 54.76 SS G_CDS: -0.27 Total: 54.49 kcal Total: -96.57 3.06 -93.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171999844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.101 kcal (2) G-P(sol) polarization free energy of solvation -96.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds