Wall clock time and date at job start Tue Mar 31 2020 22:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46944 * 2 1 4 4 C 1.53000 * 109.47147 * 240.00096 * 2 1 3 5 5 H 1.09004 * 109.46952 * 300.20116 * 4 2 1 6 6 C 1.53007 * 109.47171 * 60.19793 * 4 2 1 7 7 S 1.81393 * 109.47366 * 180.19773 * 4 2 1 8 8 C 1.81397 * 101.92304 * 181.59748 * 7 4 2 9 9 O 1.42103 * 108.57899 * 296.08818 * 7 4 2 10 10 O 1.42101 * 108.57577 * 67.10558 * 7 4 2 11 11 N 1.46494 * 109.47267 * 120.00043 * 2 1 3 12 12 C 1.46499 * 120.00231 * 62.82942 * 11 2 1 13 13 C 1.34774 * 119.99988 * 242.83612 * 11 2 1 14 14 O 1.21551 * 120.00472 * 5.71842 * 13 11 2 15 15 C 1.47889 * 120.00113 * 185.72849 * 13 11 2 16 16 C 1.39918 * 120.02311 * 21.15317 * 15 13 11 17 17 C 1.38334 * 120.35731 * 179.71901 * 16 15 13 18 18 C 1.37761 * 120.40876 * 0.56477 * 17 16 15 19 19 C 1.40746 * 120.03677 * 359.71677 * 18 17 16 20 20 C 1.41444 * 120.17499 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99943 * 28.71569 * 20 19 18 22 22 C 1.39933 * 120.00152 * 208.71939 * 20 19 18 23 23 N 1.30830 * 119.99650 * 10.45263 * 22 20 19 24 24 Si 1.86798 * 120.00182 * 190.44938 * 22 20 19 25 25 H 1.48506 * 109.46908 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46926 * 120.00013 * 24 22 20 27 27 H 1.48497 * 109.47520 * 239.99861 * 24 22 20 28 28 C 1.38991 * 120.02678 * 201.43620 * 15 13 11 29 29 H 1.09002 * 109.47131 * 59.99854 * 1 2 3 30 30 H 1.08993 * 109.46707 * 300.00108 * 1 2 3 31 31 H 1.08997 * 109.46944 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47053 * 59.99560 * 6 4 2 33 33 H 1.08993 * 109.47255 * 179.97438 * 6 4 2 34 34 H 1.09002 * 109.46879 * 300.00048 * 6 4 2 35 35 H 1.08996 * 109.47188 * 60.00172 * 8 7 4 36 36 H 1.09005 * 109.47068 * 180.02562 * 8 7 4 37 37 H 1.08998 * 109.47114 * 299.99918 * 8 7 4 38 38 H 1.08996 * 109.46911 * 84.09551 * 12 11 2 39 39 H 1.08994 * 109.47381 * 204.10173 * 12 11 2 40 40 H 1.09005 * 109.47016 * 324.09966 * 12 11 2 41 41 H 1.07997 * 119.82123 * 359.97438 * 16 15 13 42 42 H 1.08001 * 119.79770 * 180.25665 * 17 16 15 43 43 H 1.07994 * 119.97579 * 179.74476 * 18 17 16 44 44 H 0.97006 * 119.99491 * 180.02562 * 23 22 20 45 45 H 1.08008 * 120.19988 * 359.96830 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 1 1.6738 -1.7479 -1.2510 6 6 1.5342 0.0029 -2.4985 7 16 3.8540 -0.7264 -1.2464 8 6 4.2289 -1.5698 -2.8080 9 8 4.3107 0.6163 -1.3360 10 8 4.3027 -1.5415 -0.1723 11 7 2.0184 -0.6906 1.1961 12 6 1.7164 -2.1099 1.3971 13 6 2.7455 -0.0201 2.1117 14 8 2.9084 1.1791 1.9989 15 6 3.3452 -0.7435 3.2537 16 6 3.5516 -2.1252 3.1766 17 6 4.1174 -2.8079 4.2384 18 6 4.4735 -2.1376 5.3881 19 6 4.2681 -0.7486 5.4861 20 6 4.6331 -0.0574 6.6649 21 1 5.4439 -0.4242 7.2769 22 6 3.9437 1.1017 7.0382 23 7 2.8396 1.4338 6.4200 24 14 4.5999 2.1747 8.4193 25 1 5.8545 1.5846 8.9512 26 1 4.8764 3.5377 7.8985 27 1 3.5907 2.2554 9.5057 28 6 3.6989 -0.0523 4.4065 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 0.5138 0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.9003 1.0296 -2.4967 33 1 1.8978 -0.5106 -3.3885 34 1 0.4442 0.0060 -2.5003 35 1 3.8042 -1.0044 -3.6374 36 1 5.3095 -1.6413 -2.9320 37 1 3.7983 -2.5711 -2.7925 38 1 2.4457 -2.7162 0.8597 39 1 1.7623 -2.3441 2.4606 40 1 0.7165 -2.3256 1.0204 41 1 3.2714 -2.6610 2.2818 42 1 4.2765 -3.8738 4.1676 43 1 4.9110 -2.6781 6.2143 44 1 2.3619 2.2375 6.6785 45 1 3.5376 1.0137 4.4719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172005474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:06 Heat of formation + Delta-G solvation = -56.539897 kcal Electronic energy + Delta-G solvation = -28836.152218 eV Core-core repulsion = 24947.250798 eV Total energy + Delta-G solvation = -3888.901420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.87001 -37.35564 -36.93825 -36.37909 -35.88374 -34.10438 -33.26556 -30.72958 -29.63386 -29.34311 -28.84233 -26.91661 -25.35980 -25.03273 -22.62691 -20.88555 -20.50600 -18.94706 -18.71400 -17.57990 -17.00670 -16.50504 -16.22995 -15.71924 -15.53519 -15.06217 -14.98166 -14.70296 -14.07477 -13.73748 -13.61190 -13.45966 -13.36223 -13.14924 -12.89145 -12.65796 -12.49184 -12.40099 -12.29492 -12.18952 -11.94816 -11.91070 -11.84017 -11.72086 -11.40522 -11.12122 -11.07773 -10.96199 -10.92733 -10.41263 -10.26051 -10.19290 -9.92625 -9.47647 -9.16307 -8.90387 -8.38603 -7.49859 -7.31338 -6.64445 -4.31916 -0.08868 2.31160 2.68028 2.90421 3.14784 3.19822 3.21990 3.28238 3.59913 3.84699 3.90437 4.01571 4.25964 4.39177 4.57056 4.73261 4.82543 4.84092 5.04130 5.11122 5.25988 5.28790 5.39968 5.42223 5.54946 5.60625 5.67994 5.72412 5.86026 5.99410 6.08132 6.19755 6.24892 6.51243 6.75500 6.88529 7.10219 7.14593 7.33178 7.50219 7.70120 7.86349 7.97993 8.09473 8.28747 8.61750 8.87934 8.93895 8.96237 10.30265 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.003550 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.117183 B = 7886.277906 C = 8204.487754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 H 0.115 0.885 4 C -0.588 4.588 5 H 0.138 0.862 6 C -0.143 4.143 7 S 2.412 3.588 8 C -0.666 4.666 9 O -0.928 6.928 10 O -0.911 6.911 11 N -0.624 5.624 12 C 0.059 3.941 13 C 0.571 3.429 14 O -0.541 6.541 15 C -0.128 4.128 16 C -0.215 4.215 17 C -0.109 4.109 18 C -0.203 4.203 19 C 0.095 3.905 20 C -0.463 4.463 21 H 0.079 0.921 22 C 0.071 3.929 23 N -0.800 5.800 24 Si 0.912 3.088 25 H -0.261 1.261 26 H -0.272 1.272 27 H -0.275 1.275 28 C -0.087 4.087 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.054 0.946 41 H 0.125 0.875 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.280 0.720 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -6.883 -18.392 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.049 3.951 3 H 0.133 0.867 4 C -0.697 4.697 5 H 0.156 0.844 6 C -0.202 4.202 7 S 2.592 3.408 8 C -0.814 4.814 9 O -0.925 6.925 10 O -0.908 6.908 11 N -0.359 5.359 12 C -0.083 4.083 13 C 0.364 3.636 14 O -0.418 6.418 15 C -0.131 4.131 16 C -0.234 4.234 17 C -0.128 4.128 18 C -0.223 4.223 19 C 0.093 3.907 20 C -0.493 4.493 21 H 0.097 0.903 22 C -0.145 4.145 23 N -0.426 5.426 24 Si 0.737 3.263 25 H -0.185 1.185 26 H -0.197 1.197 27 H -0.201 1.201 28 C -0.107 4.107 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.084 0.916 39 H 0.127 0.873 40 H 0.072 0.928 41 H 0.142 0.858 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.233 -5.726 -17.806 19.422 hybrid contribution -0.396 -0.083 -0.090 0.414 sum -5.629 -5.809 -17.895 19.639 Atomic orbital electron populations 1.22101 0.93601 1.02555 1.02874 1.20607 0.95945 0.97562 0.80976 0.86711 1.30593 1.26055 1.09258 1.03817 0.84411 1.21743 1.04266 1.01160 0.92993 1.08420 0.78367 0.76625 0.77427 1.30420 1.12247 1.14761 1.23935 1.93609 1.78320 1.34137 1.86483 1.93658 1.78204 1.69969 1.48953 1.47881 1.55021 1.11534 1.21492 1.22632 0.99236 0.80925 1.05493 1.19051 0.76228 0.86452 0.81856 1.90708 1.60583 1.14716 1.75841 1.19371 1.05604 0.94048 0.94093 1.21376 1.08574 0.93394 1.00030 1.20506 1.00236 0.97587 0.94435 1.21195 1.08910 0.94371 0.97786 1.17582 0.90102 0.90725 0.92289 1.19571 1.15717 1.07254 1.06771 0.90295 1.25901 0.93776 0.97285 0.97558 1.69767 1.12476 1.23003 1.37392 0.86205 0.79831 0.79923 0.80384 1.18502 1.19742 1.20060 1.21672 0.98683 1.00412 0.89972 0.91236 0.91332 0.92002 0.90211 0.91295 0.89738 0.85567 0.85398 0.85520 0.91616 0.87344 0.92767 0.85802 0.88904 0.88736 0.90873 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.86 37.16 0.33 -1.30 16 2 C 0.15 2.13 2.21 -67.93 -0.15 1.98 16 3 H 0.12 1.88 6.93 -51.93 -0.36 1.52 16 4 C -0.59 -5.70 2.18 -26.73 -0.06 -5.75 16 5 H 0.14 0.91 7.61 -51.92 -0.40 0.51 16 6 C -0.14 -0.96 8.58 37.16 0.32 -0.64 16 7 S 2.41 30.69 4.73 -107.50 -0.51 30.18 16 8 C -0.67 -4.68 10.12 101.05 1.02 -3.66 16 9 O -0.93 -15.84 17.97 -57.83 -1.04 -16.88 16 10 O -0.91 -15.16 15.60 -57.83 -0.90 -16.06 16 11 N -0.62 -10.82 1.59 -175.03 -0.28 -11.10 16 12 C 0.06 0.84 7.42 59.85 0.44 1.28 16 13 C 0.57 13.28 7.31 -12.31 -0.09 13.19 16 14 O -0.54 -14.24 15.88 5.32 0.08 -14.15 16 15 C -0.13 -3.20 5.56 -105.04 -0.58 -3.79 16 16 C -0.21 -4.74 7.58 -38.92 -0.29 -5.04 16 17 C -0.11 -2.42 10.01 -39.72 -0.40 -2.82 16 18 C -0.20 -4.99 9.78 -38.81 -0.38 -5.37 16 19 C 0.10 2.62 5.55 -106.87 -0.59 2.03 16 20 C -0.46 -12.66 9.06 -37.73 -0.34 -13.00 16 21 H 0.08 2.06 7.87 -52.48 -0.41 1.64 16 22 C 0.07 1.87 5.26 -17.34 -0.09 1.78 16 23 N -0.80 -21.84 10.82 55.55 0.60 -21.24 16 24 Si 0.91 19.60 29.57 -169.99 -5.03 14.58 16 25 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 28 C -0.09 -2.44 8.19 -38.45 -0.32 -2.75 16 29 H 0.07 0.57 6.43 -51.93 -0.33 0.23 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.56 6.79 -51.93 -0.35 0.21 16 32 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.07 0.26 6.49 -51.93 -0.34 -0.07 16 34 H 0.08 0.45 6.43 -51.93 -0.33 0.11 16 35 H 0.13 0.59 6.83 -51.93 -0.35 0.24 16 36 H 0.13 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.13 0.59 8.14 -51.92 -0.42 0.16 16 38 H 0.07 0.85 6.06 -51.93 -0.31 0.54 16 39 H 0.11 1.76 4.97 -51.93 -0.26 1.50 16 40 H 0.05 0.57 6.60 -51.93 -0.34 0.23 16 41 H 0.12 2.34 4.09 -52.49 -0.21 2.12 16 42 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 44 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 45 H 0.13 4.02 5.94 -52.48 -0.31 3.71 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -36.74 365.16 -8.74 -45.48 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.99 Total: 7.56 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -1.18 Total: -23.86 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.32 Total: -32.35 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -1.86 Total: -47.10 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.58 kcal Atomic # 16 Polarization: 30.69 SS G_CDS: -0.51 Total: 30.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.74 -8.74 -45.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172005474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.060 kcal (2) G-P(sol) polarization free energy of solvation -36.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds