Wall clock time and date at job start Tue Mar 31 2020 23:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35666 * 116.99713 * 2 1 4 4 C 1.39082 * 119.88119 * 180.02562 * 3 2 1 5 5 C 1.37119 * 120.11545 * 180.02562 * 4 3 2 6 6 C 1.40039 * 119.87863 * 359.97438 * 5 4 3 7 7 C 1.46865 * 120.11277 * 180.02562 * 6 5 4 8 8 O 1.21297 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00249 * 180.02562 * 7 6 5 10 10 N 1.46502 * 109.47355 * 180.02562 * 9 7 6 11 11 C 1.34771 * 120.00159 * 179.97438 * 10 9 7 12 12 O 1.21542 * 120.00150 * 359.97438 * 11 10 9 13 13 C 1.47883 * 119.99963 * 179.97438 * 11 10 9 14 14 C 1.39921 * 120.02735 * 359.97438 * 13 11 10 15 15 C 1.38324 * 120.35998 * 180.02562 * 14 13 11 16 16 C 1.37757 * 120.41590 * 359.95668 * 15 14 13 17 17 C 1.40753 * 120.03343 * 0.04137 * 16 15 14 18 18 C 1.41437 * 120.17299 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00158 * 24.40208 * 18 17 16 20 20 C 1.39938 * 119.99677 * 204.40514 * 18 17 16 21 21 N 1.30830 * 120.00373 * 17.84341 * 20 18 17 22 22 Si 1.86800 * 119.99826 * 197.84001 * 20 18 17 23 23 H 1.48499 * 109.47256 * 90.00093 * 22 20 18 24 24 H 1.48503 * 109.47083 * 209.99943 * 22 20 18 25 25 H 1.48503 * 109.47336 * 329.99944 * 22 20 18 26 26 C 1.38994 * 120.02809 * 179.97438 * 13 11 10 27 27 C 1.40033 * 119.77611 * 0.27909 * 6 5 4 28 28 C 1.37115 * 119.88186 * 359.46194 * 27 6 5 29 29 H 1.09006 * 109.47063 * 299.99849 * 1 2 3 30 30 H 1.08997 * 109.47423 * 59.99711 * 1 2 3 31 31 H 1.09002 * 109.47223 * 179.97438 * 1 2 3 32 32 H 1.07993 * 119.94455 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.06323 * 179.97438 * 5 4 3 34 34 H 1.08990 * 109.47405 * 59.99477 * 9 7 6 35 35 H 1.08999 * 109.46762 * 299.99392 * 9 7 6 36 36 H 0.97004 * 120.00124 * 359.97438 * 10 9 7 37 37 H 1.07995 * 119.81848 * 0.02562 * 14 13 11 38 38 H 1.08007 * 119.79465 * 179.97438 * 15 14 13 39 39 H 1.08001 * 119.98441 * 179.97438 * 16 15 14 40 40 H 0.96995 * 119.99719 * 180.02562 * 21 20 18 41 41 H 1.08005 * 120.20043 * 359.70405 * 26 13 11 42 42 H 1.08009 * 120.05941 * 179.69910 * 27 6 5 43 43 H 1.08003 * 119.94287 * 180.25420 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4339 1.2788 -0.0005 5 6 4.0613 2.4980 0.0000 6 6 3.3008 3.6739 0.0005 7 6 3.9675 4.9826 0.0005 8 8 5.1788 5.0461 -0.0004 9 6 3.1468 6.2464 0.0017 10 7 4.0392 7.4083 0.0008 11 6 3.5240 8.6536 0.0011 12 8 2.3191 8.8129 0.0016 13 6 4.4248 9.8264 0.0008 14 6 5.8121 9.6438 0.0008 15 6 6.6610 10.7358 0.0011 16 6 6.1512 12.0156 0.0004 17 6 4.7584 12.2190 0.0004 18 6 4.2317 13.5317 0.0004 19 1 4.8211 14.3500 -0.3861 20 6 2.9469 13.7700 0.5011 21 7 2.3715 12.8852 1.2742 22 14 2.0534 15.3516 0.0658 23 1 1.2627 15.1482 -1.1746 24 1 1.1430 15.7278 1.1771 25 1 3.0442 16.4363 -0.1512 26 6 3.8942 11.1111 0.0006 27 6 1.9026 3.5979 0.0064 28 6 1.2850 2.3737 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 4.0193 0.3713 -0.0014 33 1 5.1400 2.5514 0.0000 34 1 2.5186 6.2709 0.8920 35 1 2.5174 6.2716 -0.8878 36 1 5.0008 7.2812 0.0001 37 1 6.2222 8.6447 0.0006 38 1 7.7304 10.5843 0.0014 39 1 6.8204 12.8632 0.0011 40 1 1.4808 13.0503 1.6209 41 1 2.8240 11.2569 -0.0042 42 1 1.3116 4.5019 0.0118 43 1 0.2066 2.3139 0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179065283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:05 Heat of formation + Delta-G solvation = -63.757904 kcal Electronic energy + Delta-G solvation = -26984.341131 eV Core-core repulsion = 22959.682764 eV Total energy + Delta-G solvation = -4024.658367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.83302 -39.86513 -38.85468 -37.44456 -36.95263 -34.15161 -33.66166 -31.94614 -31.05693 -30.29384 -29.42664 -28.42777 -27.18555 -25.25374 -23.82484 -22.94354 -22.03908 -20.94625 -20.16570 -19.61325 -18.70402 -17.89638 -16.95230 -16.66796 -16.28461 -16.13648 -15.62589 -15.43293 -15.19411 -15.01743 -14.69955 -14.35366 -14.07838 -14.01789 -13.76741 -13.38820 -13.14755 -13.09521 -13.05476 -12.60625 -12.46164 -12.40984 -12.37288 -11.62596 -11.55118 -11.28718 -11.16429 -11.07483 -10.71125 -10.48987 -10.04542 -9.99788 -9.66975 -9.55279 -9.21065 -9.07962 -8.81072 -8.67603 -7.62279 -7.50455 -6.79081 -4.39994 0.34269 0.93685 2.09968 2.20386 2.71695 2.82698 3.08274 3.11495 3.16935 3.37866 3.39470 3.84761 3.92668 3.95203 4.24986 4.38685 4.57693 4.64359 4.65232 4.78584 4.87765 4.97473 5.02568 5.19216 5.34402 5.36140 5.55168 5.62398 5.69694 5.77640 5.82336 5.99877 6.12726 6.20354 6.32517 6.72461 6.74296 6.82526 6.99644 7.02867 7.22323 7.27007 7.39552 7.71670 7.76972 7.93872 8.07919 8.19617 8.51589 8.81038 8.84359 8.89965 10.15760 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.001999 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.480764 B =14000.242702 C =15283.131645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.160 3.840 4 C -0.166 4.166 5 C -0.017 4.017 6 C -0.206 4.206 7 C 0.396 3.604 8 O -0.450 6.450 9 C 0.076 3.924 10 N -0.732 5.732 11 C 0.568 3.432 12 O -0.547 6.547 13 C -0.129 4.129 14 C -0.215 4.215 15 C -0.098 4.098 16 C -0.210 4.210 17 C 0.097 3.903 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.784 5.784 22 Si 0.911 3.089 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.091 4.091 27 C -0.027 4.027 28 C -0.222 4.222 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.409 0.591 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.284 0.716 41 H 0.134 0.866 42 H 0.140 0.860 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 -22.633 -1.761 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.113 3.887 4 C -0.185 4.185 5 C -0.035 4.035 6 C -0.208 4.208 7 C 0.274 3.726 8 O -0.325 6.325 9 C -0.049 4.049 10 N -0.389 5.389 11 C 0.359 3.641 12 O -0.425 6.425 13 C -0.132 4.132 14 C -0.235 4.235 15 C -0.116 4.116 16 C -0.230 4.230 17 C 0.095 3.905 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.408 5.408 22 Si 0.735 3.265 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.111 4.111 27 C -0.045 4.045 28 C -0.241 4.241 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.247 0.753 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.152 0.848 42 H 0.158 0.842 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.705 -22.725 -1.604 23.262 hybrid contribution -0.388 0.598 -0.038 0.714 sum -5.093 -22.127 -1.643 22.765 Atomic orbital electron populations 1.23163 0.77731 1.04380 1.01857 1.86041 1.21990 1.26935 1.87613 1.19437 0.92480 0.84292 0.92443 1.20297 0.91256 0.98912 1.08032 1.21114 1.00744 0.90269 0.91422 1.20259 0.94260 0.94523 1.11747 1.22423 0.89205 0.89782 0.71186 1.90532 1.16097 1.89302 1.36580 1.21463 0.94118 0.84716 1.04599 1.45790 1.10787 1.04491 1.77844 1.18849 0.88236 0.82667 0.74386 1.90687 1.15512 1.86193 1.50141 1.19417 0.92617 0.92490 1.08685 1.20404 0.92146 0.96848 1.14143 1.20448 0.97215 0.93082 1.00856 1.21114 0.95157 0.95213 1.11515 1.17604 0.90744 0.93313 0.88871 1.19588 0.99227 0.94088 1.35992 0.90056 1.25968 0.97396 0.98602 0.92646 1.69797 1.14639 1.34818 1.21588 0.86267 0.79558 0.81525 0.79133 1.19163 1.20254 1.18586 1.21625 1.00932 0.89325 0.99207 1.21227 0.93324 0.98051 0.91916 1.21127 1.00601 0.92056 1.10268 0.92170 0.92183 0.87915 0.84445 0.83970 0.88163 0.88198 0.75261 0.89010 0.88811 0.88568 0.90478 0.84803 0.84215 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.80 101.05 0.99 1.09 16 2 O -0.31 -2.44 10.48 -18.70 -0.20 -2.63 16 3 C 0.16 1.35 6.70 -38.96 -0.26 1.09 16 4 C -0.17 -1.42 9.95 -39.67 -0.39 -1.82 16 5 C -0.02 -0.16 9.57 -39.31 -0.38 -0.54 16 6 C -0.21 -2.13 5.87 -105.06 -0.62 -2.74 16 7 C 0.40 4.94 7.18 -30.82 -0.22 4.72 16 8 O -0.45 -6.70 15.65 5.54 0.09 -6.61 16 9 C 0.08 1.03 4.76 -5.19 -0.02 1.01 16 10 N -0.73 -12.84 5.48 -62.43 -0.34 -13.18 16 11 C 0.57 12.54 7.77 -12.31 -0.10 12.45 16 12 O -0.55 -13.41 16.33 5.33 0.09 -13.32 16 13 C -0.13 -3.11 5.87 -105.04 -0.62 -3.72 16 14 C -0.22 -4.72 9.55 -38.92 -0.37 -5.09 16 15 C -0.10 -2.14 10.01 -39.73 -0.40 -2.54 16 16 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16 17 C 0.10 2.59 5.57 -106.87 -0.60 2.00 16 18 C -0.46 -12.13 9.05 -37.73 -0.34 -12.48 16 19 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 20 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 21 N -0.78 -20.77 10.96 55.55 0.61 -20.17 16 22 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 26 C -0.09 -2.44 8.23 -38.44 -0.32 -2.75 16 27 C -0.03 -0.23 9.44 -39.32 -0.37 -0.60 16 28 C -0.22 -1.70 8.99 -39.68 -0.36 -2.06 16 29 H 0.06 0.20 7.65 -51.93 -0.40 -0.19 16 30 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.14 1.28 7.64 -52.49 -0.40 0.88 16 34 H 0.10 1.28 8.08 -51.93 -0.42 0.86 16 35 H 0.10 1.25 8.09 -51.93 -0.42 0.83 16 36 H 0.41 6.92 5.45 -40.82 -0.22 6.70 16 37 H 0.09 1.74 6.38 -52.49 -0.33 1.41 16 38 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 41 H 0.13 3.86 5.75 -52.48 -0.30 3.56 16 42 H 0.14 0.98 7.04 -52.48 -0.37 0.61 16 43 H 0.14 0.73 6.27 -52.48 -0.33 0.40 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -32.09 371.54 -8.85 -40.94 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -4.83 Total: 11.28 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -4.83 Total: -15.67 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.27 Total: -33.35 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.02 Total: -22.57 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.09 -8.85 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179065283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.814 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds