Wall clock time and date at job start Tue Mar 31 2020 23:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35666 * 116.99713 * 2 1 4 4 C 1.39082 * 119.88119 * 180.02562 * 3 2 1 5 5 C 1.37119 * 120.11545 * 180.02562 * 4 3 2 6 6 C 1.40039 * 119.87863 * 359.97438 * 5 4 3 7 7 C 1.46865 * 120.11277 * 180.02562 * 6 5 4 8 8 O 1.21297 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00249 * 180.02562 * 7 6 5 10 10 N 1.46502 * 109.47355 * 180.02562 * 9 7 6 11 11 C 1.34771 * 120.00159 * 179.97438 * 10 9 7 12 12 O 1.21542 * 120.00150 * 359.97438 * 11 10 9 13 13 C 1.47883 * 119.99963 * 179.97438 * 11 10 9 14 14 C 1.39921 * 120.02735 * 359.97438 * 13 11 10 15 15 C 1.38324 * 120.35998 * 180.02562 * 14 13 11 16 16 C 1.37757 * 120.41590 * 359.95668 * 15 14 13 17 17 C 1.40753 * 120.03343 * 0.04137 * 16 15 14 18 18 C 1.41437 * 120.17299 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00158 * 24.40208 * 18 17 16 20 20 C 1.39938 * 119.99677 * 204.40514 * 18 17 16 21 21 N 1.30830 * 120.00373 * 17.84341 * 20 18 17 22 22 Si 1.86800 * 119.99826 * 197.84001 * 20 18 17 23 23 H 1.48499 * 109.47256 * 90.00093 * 22 20 18 24 24 H 1.48503 * 109.47083 * 209.99943 * 22 20 18 25 25 H 1.48503 * 109.47336 * 329.99944 * 22 20 18 26 26 C 1.38994 * 120.02809 * 179.97438 * 13 11 10 27 27 C 1.40033 * 119.77611 * 0.27909 * 6 5 4 28 28 C 1.37115 * 119.88186 * 359.46194 * 27 6 5 29 29 H 1.09006 * 109.47063 * 299.99849 * 1 2 3 30 30 H 1.08997 * 109.47423 * 59.99711 * 1 2 3 31 31 H 1.09002 * 109.47223 * 179.97438 * 1 2 3 32 32 H 1.07993 * 119.94455 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.06323 * 179.97438 * 5 4 3 34 34 H 1.08990 * 109.47405 * 59.99477 * 9 7 6 35 35 H 1.08999 * 109.46762 * 299.99392 * 9 7 6 36 36 H 0.97004 * 120.00124 * 359.97438 * 10 9 7 37 37 H 1.07995 * 119.81848 * 0.02562 * 14 13 11 38 38 H 1.08007 * 119.79465 * 179.97438 * 15 14 13 39 39 H 1.08001 * 119.98441 * 179.97438 * 16 15 14 40 40 H 0.96995 * 119.99719 * 180.02562 * 21 20 18 41 41 H 1.08005 * 120.20043 * 359.70405 * 26 13 11 42 42 H 1.08009 * 120.05941 * 179.69910 * 27 6 5 43 43 H 1.08003 * 119.94287 * 180.25420 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4339 1.2788 -0.0005 5 6 4.0613 2.4980 0.0000 6 6 3.3008 3.6739 0.0005 7 6 3.9675 4.9826 0.0005 8 8 5.1788 5.0461 -0.0004 9 6 3.1468 6.2464 0.0017 10 7 4.0392 7.4083 0.0008 11 6 3.5240 8.6536 0.0011 12 8 2.3191 8.8129 0.0016 13 6 4.4248 9.8264 0.0008 14 6 5.8121 9.6438 0.0008 15 6 6.6610 10.7358 0.0011 16 6 6.1512 12.0156 0.0004 17 6 4.7584 12.2190 0.0004 18 6 4.2317 13.5317 0.0004 19 1 4.8211 14.3500 -0.3861 20 6 2.9469 13.7700 0.5011 21 7 2.3715 12.8852 1.2742 22 14 2.0534 15.3516 0.0658 23 1 1.2627 15.1482 -1.1746 24 1 1.1430 15.7278 1.1771 25 1 3.0442 16.4363 -0.1512 26 6 3.8942 11.1111 0.0006 27 6 1.9026 3.5979 0.0064 28 6 1.2850 2.3737 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 4.0193 0.3713 -0.0014 33 1 5.1400 2.5514 0.0000 34 1 2.5186 6.2709 0.8920 35 1 2.5174 6.2716 -0.8878 36 1 5.0008 7.2812 0.0001 37 1 6.2222 8.6447 0.0006 38 1 7.7304 10.5843 0.0014 39 1 6.8204 12.8632 0.0011 40 1 1.4808 13.0503 1.6209 41 1 2.8240 11.2569 -0.0042 42 1 1.3116 4.5019 0.0118 43 1 0.2066 2.3139 0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179065283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:04 Heat of formation + Delta-G solvation = -82.920000 kcal Electronic energy + Delta-G solvation = -26985.172062 eV Core-core repulsion = 22959.682764 eV Total energy + Delta-G solvation = -4025.489298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.63979 -40.99190 -40.21397 -38.80047 -38.12007 -35.76627 -35.41577 -32.76902 -32.11730 -31.64991 -31.29004 -29.29444 -28.00030 -27.12033 -24.77623 -24.00798 -23.18393 -22.77998 -21.39292 -20.99452 -19.63744 -19.25388 -18.24957 -17.80612 -17.23640 -16.89534 -16.87971 -16.70659 -16.68787 -16.43915 -15.83602 -15.59450 -15.52221 -15.02987 -14.96981 -14.61563 -14.41724 -14.30837 -14.15488 -13.86706 -13.76934 -13.52114 -13.40427 -12.95863 -12.83033 -12.80862 -12.53221 -12.18538 -12.07221 -11.90524 -11.85878 -11.51466 -11.08100 -11.06836 -10.82059 -10.29909 -10.19190 -9.50053 -9.40459 -9.35660 -8.66480 -6.38021 -0.43173 0.30133 0.34752 0.99868 1.24220 1.37786 1.48799 1.52237 2.02771 2.06295 2.20207 2.23768 2.69775 2.77577 2.85838 3.64642 3.68709 3.81514 3.91469 4.01685 4.17310 4.28174 4.28658 4.33488 4.39881 4.42074 4.44193 4.54234 4.57871 4.75040 4.88816 4.94812 5.04859 5.08550 5.16631 5.17790 5.22679 5.30846 5.38000 5.50893 5.56802 5.84415 5.91564 6.04225 6.26687 6.27889 6.30148 6.44356 6.62292 6.87609 6.93318 7.20551 8.30638 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.001999 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.480764 B =14000.242702 C =15283.131645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.326 6.326 3 C 0.160 3.840 4 C -0.174 4.174 5 C -0.022 4.022 6 C -0.224 4.224 7 C 0.408 3.592 8 O -0.480 6.480 9 C 0.069 3.931 10 N -0.716 5.716 11 C 0.566 3.434 12 O -0.579 6.579 13 C -0.140 4.140 14 C -0.202 4.202 15 C -0.096 4.096 16 C -0.216 4.216 17 C 0.066 3.934 18 C -0.495 4.495 19 H 0.085 0.915 20 C 0.029 3.971 21 N -0.823 5.823 22 Si 0.985 3.015 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.252 1.252 26 C -0.126 4.126 27 C -0.025 4.025 28 C -0.221 4.221 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.413 0.587 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.288 0.712 41 H 0.104 0.896 42 H 0.154 0.846 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.365 -24.263 -2.040 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.113 3.887 4 C -0.192 4.192 5 C -0.040 4.040 6 C -0.226 4.226 7 C 0.288 3.712 8 O -0.358 6.358 9 C -0.055 4.055 10 N -0.372 5.372 11 C 0.357 3.643 12 O -0.460 6.460 13 C -0.143 4.143 14 C -0.222 4.222 15 C -0.113 4.113 16 C -0.236 4.236 17 C 0.064 3.936 18 C -0.524 4.524 19 H 0.103 0.897 20 C -0.186 4.186 21 N -0.449 5.449 22 Si 0.805 3.195 23 H -0.190 1.190 24 H -0.193 1.193 25 H -0.175 1.175 26 C -0.147 4.147 27 C -0.043 4.043 28 C -0.240 4.240 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.139 0.861 32 H 0.168 0.832 33 H 0.159 0.841 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.252 0.748 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.128 0.872 40 H 0.098 0.902 41 H 0.122 0.878 42 H 0.172 0.828 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.719 -24.406 -1.884 24.929 hybrid contribution -0.335 0.832 0.047 0.898 sum -5.054 -23.574 -1.837 24.180 Atomic orbital electron populations 1.23472 0.75814 1.06028 1.02802 1.86036 1.24011 1.26610 1.87210 1.19618 0.92642 0.84943 0.91504 1.20462 0.91808 0.99014 1.07937 1.21164 1.00840 0.90481 0.91529 1.20110 0.95056 0.93370 1.14048 1.22404 0.88611 0.90053 0.70099 1.90521 1.17105 1.89553 1.38603 1.21778 0.94011 0.83744 1.05932 1.45618 1.11541 1.04178 1.75815 1.18614 0.87491 0.83621 0.74616 1.90663 1.16611 1.86799 1.51924 1.19741 0.94223 0.92495 1.07890 1.20822 0.91121 0.98722 1.11545 1.20900 0.99438 0.91979 0.99026 1.21408 0.94356 0.96964 1.10881 1.17971 0.92163 0.93661 0.89803 1.19866 1.00632 0.94354 1.37586 0.89738 1.26876 0.97754 1.02111 0.91869 1.69887 1.15127 1.37021 1.22843 0.85162 0.78284 0.77210 0.78825 1.18995 1.19339 1.17502 1.21441 0.99690 0.90962 1.02589 1.21416 0.92666 0.99128 0.91132 1.21394 1.01906 0.91326 1.09331 0.91203 0.91179 0.86112 0.83194 0.84061 0.86975 0.86753 0.74750 0.85551 0.84606 0.87194 0.90171 0.87837 0.82813 0.82113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.80 113.37 1.11 1.18 16 2 O -0.33 -4.35 10.48 -89.82 -0.94 -5.29 16 3 C 0.16 2.39 6.70 22.67 0.15 2.54 16 4 C -0.17 -2.73 9.95 22.21 0.22 -2.51 16 5 C -0.02 -0.40 9.57 22.44 0.21 -0.18 16 6 C -0.22 -4.34 5.87 -20.15 -0.12 -4.46 16 7 C 0.41 9.76 7.18 27.94 0.20 9.96 16 8 O -0.48 -13.92 15.65 -3.08 -0.05 -13.96 16 9 C 0.07 1.80 4.76 85.63 0.41 2.21 16 10 N -0.72 -24.48 5.48 -469.70 -2.57 -27.06 16 11 C 0.57 25.22 7.77 86.80 0.67 25.90 16 12 O -0.58 -29.09 16.33 -3.85 -0.06 -29.16 16 13 C -0.14 -6.84 5.87 -20.13 -0.12 -6.96 16 14 C -0.20 -8.53 9.55 22.70 0.22 -8.31 16 15 C -0.10 -3.98 10.01 22.18 0.22 -3.76 16 16 C -0.22 -10.36 9.78 22.77 0.22 -10.13 16 17 C 0.07 3.65 5.57 -21.32 -0.12 3.53 16 18 C -0.50 -27.06 9.05 23.47 0.21 -26.85 16 19 H 0.08 4.36 7.91 -2.91 -0.02 4.33 16 20 C 0.03 1.52 5.14 85.25 0.44 1.95 16 21 N -0.82 -45.67 10.96 21.83 0.24 -45.43 16 22 Si 0.98 39.43 29.59 68.60 2.03 41.46 16 23 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 24 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 25 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 26 C -0.13 -7.08 8.23 23.01 0.19 -6.89 16 27 C -0.03 -0.38 9.44 22.44 0.21 -0.17 16 28 C -0.22 -2.85 8.99 22.21 0.20 -2.65 16 29 H 0.07 0.27 7.65 -2.38 -0.02 0.25 16 30 H 0.07 0.27 7.65 -2.39 -0.02 0.25 16 31 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.14 2.50 7.64 -2.91 -0.02 2.47 16 34 H 0.11 2.71 8.08 -2.39 -0.02 2.69 16 35 H 0.11 2.70 8.09 -2.39 -0.02 2.68 16 36 H 0.41 13.35 5.45 -92.71 -0.51 12.84 16 37 H 0.13 4.40 6.38 -2.91 -0.02 4.39 16 38 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 40 H 0.29 14.61 8.30 -92.71 -0.77 13.84 16 41 H 0.10 6.37 5.75 -2.91 -0.02 6.35 16 42 H 0.15 1.81 7.04 -2.91 -0.02 1.79 16 43 H 0.16 1.19 6.27 -2.91 -0.02 1.18 16 Total: -1.00 -72.47 371.54 3.74 -68.73 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: 0.56 Total: 36.32 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 4.54 Total: -25.61 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -2.33 Total: -72.49 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -1.05 Total: -48.42 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -72.47 3.74 -68.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179065283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.191 kcal (2) G-P(sol) polarization free energy of solvation -72.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds