Wall clock time and date at job start Tue Mar 31 2020 23:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35899 * 116.99852 * 2 1 4 4 C 1.38456 * 119.76928 * 359.97438 * 3 2 1 5 5 C 1.38131 * 119.76310 * 180.02562 * 4 3 2 6 6 C 1.38033 * 119.77946 * 0.27201 * 5 4 3 7 7 C 1.38830 * 120.62507 * 359.89899 * 6 5 4 8 8 C 1.37621 * 119.88088 * 359.60406 * 7 6 5 9 9 C 1.50595 * 122.88689 * 181.44133 * 8 7 6 10 10 C 1.53274 * 110.82586 * 339.70955 * 9 8 7 11 11 N 1.47231 * 107.65896 * 47.61343 * 10 9 8 12 12 S 1.65603 * 121.33064 * 115.83367 * 11 10 9 13 13 O 1.42102 * 104.27650 * 153.64869 * 12 11 10 14 14 O 1.42098 * 104.27898 * 25.78929 * 12 11 10 15 15 C 1.81408 * 104.44779 * 269.71635 * 12 11 10 16 16 C 1.53000 * 109.46799 * 180.02562 * 15 12 11 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 15 12 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00362 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99850 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47052 * 89.99717 * 22 20 18 24 24 H 1.48495 * 109.47307 * 209.99656 * 22 20 18 25 25 H 1.48500 * 109.47143 * 330.00164 * 22 20 18 26 26 C 1.46669 * 117.33114 * 295.56680 * 11 10 9 27 27 H 1.08995 * 109.47470 * 300.00433 * 1 2 3 28 28 H 1.09008 * 109.46573 * 60.00070 * 1 2 3 29 29 H 1.08998 * 109.47172 * 179.97438 * 1 2 3 30 30 H 1.07993 * 120.11776 * 0.02562 * 4 3 2 31 31 H 1.07995 * 120.11290 * 180.28389 * 5 4 3 32 32 H 1.07999 * 119.68718 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.20071 * 100.16947 * 9 8 7 34 34 H 1.08995 * 109.20388 * 219.51693 * 9 8 7 35 35 H 1.09001 * 109.88569 * 288.09452 * 10 9 8 36 36 H 1.09002 * 109.90867 * 167.14803 * 10 9 8 37 37 H 1.09001 * 109.46823 * 60.00309 * 15 12 11 38 38 H 1.08992 * 109.47429 * 300.00345 * 15 12 11 39 39 H 1.09002 * 109.47398 * 300.00340 * 16 15 12 40 40 H 1.09001 * 109.47194 * 60.00520 * 16 15 12 41 41 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 42 42 H 1.08998 * 109.47533 * 59.99948 * 17 16 15 43 43 H 0.96994 * 119.99814 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.43624 * 164.73476 * 26 11 10 45 45 H 1.09007 * 109.43321 * 284.64522 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2872 2.3690 -0.0005 5 6 1.9144 3.5997 -0.0011 6 6 3.2931 3.6665 -0.0068 7 6 4.0573 2.5075 -0.0098 8 6 3.4386 1.2783 0.0010 9 6 4.2005 -0.0204 0.0303 10 6 5.6414 0.1821 -0.4515 11 7 6.1852 1.3579 0.2482 12 16 7.4582 1.2222 1.2986 13 8 8.0741 2.5025 1.2700 14 8 8.1543 0.0644 0.8581 15 6 6.6840 0.9242 2.9119 16 6 7.7701 0.7801 3.9799 17 6 7.1173 0.5281 5.3404 18 6 8.1869 0.3868 6.3925 19 1 9.2283 0.4689 6.1182 20 6 7.8361 0.1537 7.7054 21 7 8.7696 0.0309 8.6236 22 14 6.0349 0.0138 8.1802 23 1 5.6034 -1.4032 8.0732 24 1 5.8534 0.4822 9.5776 25 1 5.2158 0.8508 7.2671 26 6 5.5582 2.6549 -0.0270 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2089 2.3103 -0.0005 31 1 1.3281 4.5066 0.0031 32 1 3.7819 4.6296 -0.0076 33 1 4.2124 -0.4062 1.0497 34 1 3.7053 -0.7413 -0.6201 35 1 5.6515 0.3560 -1.5275 36 1 6.2394 -0.6977 -0.2139 37 1 6.0934 0.0091 2.8680 38 1 6.0358 1.7632 3.1644 39 1 8.4188 -0.0588 3.7276 40 1 8.3604 1.6954 4.0237 41 1 6.4683 1.3667 5.5929 42 1 6.5272 -0.3873 5.2964 43 1 8.5228 -0.1335 9.5471 44 1 5.8609 3.3730 0.7351 45 1 5.8759 3.0107 -1.0072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182371791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:42 Heat of formation + Delta-G solvation = -90.043642 kcal Electronic energy + Delta-G solvation = -27611.589647 eV Core-core repulsion = 23721.235396 eV Total energy + Delta-G solvation = -3890.354251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80796 -38.57256 -37.05428 -36.46430 -35.80887 -34.79614 -32.73804 -32.20149 -31.38083 -29.30782 -28.36560 -27.65754 -25.33246 -24.07505 -23.49417 -22.18378 -20.77198 -20.19021 -18.72126 -18.19391 -17.61082 -16.93099 -16.53152 -16.27537 -16.19733 -16.03548 -15.80373 -15.15353 -14.68683 -14.27450 -14.19302 -14.13008 -14.06511 -13.79894 -13.10791 -12.93309 -12.67380 -12.63444 -12.36771 -12.30365 -12.12870 -12.05543 -11.96092 -11.92867 -11.68082 -11.59068 -11.42319 -11.22831 -10.98128 -10.94081 -10.84488 -10.08510 -9.87066 -9.74209 -9.28529 -9.14694 -8.91239 -8.57973 -8.38978 -6.07778 -4.06891 0.34219 0.99063 1.13216 2.61930 2.92985 3.27203 3.34757 3.37349 3.39839 3.92593 4.15428 4.31506 4.39843 4.41125 4.58673 4.68600 4.71315 4.78053 4.80158 4.93960 5.03071 5.08192 5.09476 5.12130 5.13751 5.24904 5.26133 5.31136 5.38378 5.51551 5.65452 5.77750 5.80342 5.90258 6.02375 6.13207 6.16233 6.27161 6.28558 6.37483 6.46163 6.68272 7.06524 7.14162 7.27974 7.71972 8.48462 8.96741 9.53539 11.05544 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010598 B = 0.003443 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.396628 B = 8130.101003 C = 9589.665970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.126 3.874 4 C -0.211 4.211 5 C -0.081 4.081 6 C -0.151 4.151 7 C -0.058 4.058 8 C -0.094 4.094 9 C -0.092 4.092 10 C 0.120 3.880 11 N -1.006 6.006 12 S 2.603 3.397 13 O -0.956 6.956 14 O -0.954 6.954 15 C -0.615 4.615 16 C -0.097 4.097 17 C -0.004 4.004 18 C -0.526 4.526 19 H 0.075 0.925 20 C 0.068 3.932 21 N -0.901 5.901 22 Si 0.879 3.121 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.266 1.266 26 C 0.167 3.833 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.020 0.980 42 H 0.016 0.984 43 H 0.264 0.736 44 H 0.102 0.898 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.488 4.030 -22.820 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.080 3.920 4 C -0.229 4.229 5 C -0.100 4.100 6 C -0.170 4.170 7 C -0.059 4.059 8 C -0.095 4.095 9 C -0.131 4.131 10 C -0.005 4.005 11 N -0.842 5.842 12 S 2.700 3.300 13 O -0.946 6.946 14 O -0.945 6.945 15 C -0.746 4.746 16 C -0.137 4.137 17 C -0.043 4.043 18 C -0.564 4.564 19 H 0.093 0.907 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.706 3.294 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.191 1.191 26 C 0.041 3.959 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.120 0.880 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.435 3.870 -22.899 29.040 hybrid contribution -2.086 0.037 0.862 2.258 sum -19.521 3.907 -22.037 29.698 Atomic orbital electron populations 1.23060 0.78404 1.03992 1.01279 1.86064 1.21272 1.26849 1.88536 1.19014 0.91742 0.84283 0.96927 1.21153 0.99938 0.92487 1.09366 1.20826 0.94471 0.97002 0.97669 1.20981 0.93832 0.97900 1.04270 1.19697 0.95684 0.92063 0.98475 1.18755 0.89970 0.95249 1.05532 1.20785 0.94818 0.94319 1.03155 1.21563 0.93519 0.87967 0.97443 1.57994 1.53355 1.13431 1.59401 1.05374 0.73941 0.74393 0.76341 1.93572 1.73194 1.41236 1.86635 1.93568 1.69876 1.51296 1.79747 1.30652 1.12482 1.11535 1.19949 1.21315 0.94770 1.02607 0.94962 1.19524 0.96822 0.96519 0.91405 1.21138 0.94235 1.49544 0.91522 0.90706 1.25018 0.97326 0.94553 0.96470 1.69910 1.32716 1.49461 1.01828 0.86789 0.85981 0.78789 0.77792 1.20204 1.21256 1.19072 1.20179 0.87751 0.84676 1.03278 0.92622 0.92745 0.88185 0.85529 0.85648 0.85452 0.90039 0.89259 0.90353 0.87942 0.85441 0.85471 0.91003 0.90996 0.96210 0.96619 0.92631 0.87960 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.00 9.47 -19.42 -0.18 -3.18 16 3 C 0.13 1.28 6.65 -39.06 -0.26 1.02 16 4 C -0.21 -1.84 9.02 -39.54 -0.36 -2.20 16 5 C -0.08 -0.67 10.05 -39.70 -0.40 -1.07 16 6 C -0.15 -1.33 9.62 -39.44 -0.38 -1.71 16 7 C -0.06 -0.58 5.82 -104.57 -0.61 -1.18 16 8 C -0.09 -0.99 5.77 -104.46 -0.60 -1.60 16 9 C -0.09 -0.89 5.52 -27.79 -0.15 -1.04 16 10 C 0.12 1.17 6.45 -3.50 -0.02 1.15 16 11 N -1.01 -11.47 3.18 -114.76 -0.37 -11.83 16 12 S 2.60 37.97 5.45 -107.50 -0.59 37.39 16 13 O -0.96 -16.29 16.93 -57.54 -0.97 -17.26 16 14 O -0.95 -16.26 16.68 -57.54 -0.96 -17.22 16 15 C -0.61 -9.21 6.18 37.16 0.23 -8.98 16 16 C -0.10 -1.92 5.16 -26.73 -0.14 -2.06 16 17 C 0.00 -0.10 4.04 -27.89 -0.11 -0.21 16 18 C -0.53 -15.10 9.66 -34.44 -0.33 -15.44 16 19 H 0.07 2.29 7.99 -52.49 -0.42 1.88 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 21 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 22 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 26 C 0.17 1.66 6.02 -5.04 -0.03 1.63 16 27 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 28 H 0.05 0.25 7.65 -51.92 -0.40 -0.14 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.13 0.84 6.26 -52.49 -0.33 0.51 16 31 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.13 0.87 8.05 -52.49 -0.42 0.45 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.77 7.66 -51.93 -0.40 0.37 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.99 6.98 -51.93 -0.36 0.63 16 37 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 38 H 0.13 1.71 8.14 -51.93 -0.42 1.28 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 42 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.10 0.98 7.40 -51.93 -0.38 0.60 16 45 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -36.24 375.01 -10.43 -46.67 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.85 Total: -1.46 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -2.27 Total: -28.64 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.41 Total: -38.92 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -2.12 Total: -37.66 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: 37.97 SS G_CDS: -0.59 Total: 37.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.24 -10.43 -46.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182371791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.369 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds