Wall clock time and date at job start Tue Mar 31 2020 22:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47139 * 2 1 4 4 O 1.42904 * 109.46902 * 239.99988 * 2 1 3 5 5 C 1.53001 * 109.47053 * 120.00142 * 2 1 3 6 6 N 1.46502 * 109.46783 * 185.42098 * 5 2 1 7 7 C 1.34779 * 119.99848 * 94.53740 * 6 5 2 8 8 O 1.21548 * 119.99925 * 346.23631 * 7 6 5 9 9 C 1.47863 * 120.00112 * 166.23905 * 7 6 5 10 10 C 1.39676 * 120.09834 * 50.06346 * 9 7 6 11 11 C 1.38038 * 120.03486 * 179.97438 * 10 9 7 12 12 C 1.38183 * 120.24813 * 359.74573 * 11 10 9 13 13 C 1.39179 * 120.19800 * 0.50815 * 12 11 10 14 14 S 1.76195 * 120.02037 * 179.76653 * 13 12 11 15 15 C 1.76206 * 100.00210 * 264.75730 * 14 13 12 16 16 H 1.07995 * 119.99622 * 5.00992 * 15 14 13 17 17 C 1.38728 * 119.99962 * 185.00593 * 15 14 13 18 18 N 1.31627 * 120.00199 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00025 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46901 * 59.99915 * 19 17 15 21 21 H 1.48501 * 109.47349 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46977 * 300.00324 * 19 17 15 23 23 C 1.38881 * 119.95984 * 359.49486 * 13 12 11 24 24 C 1.46502 * 120.00003 * 274.53498 * 6 5 2 25 25 H 1.08993 * 109.46727 * 341.46026 * 24 6 5 26 26 C 1.52993 * 109.47108 * 101.46139 * 24 6 5 27 27 C 1.53002 * 109.46766 * 221.46040 * 24 6 5 28 28 O 1.42900 * 109.46811 * 120.27459 * 27 24 6 29 29 H 1.08989 * 109.47522 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46626 * 300.00123 * 1 2 3 31 31 H 1.09000 * 109.47405 * 59.99357 * 1 2 3 32 32 H 0.96699 * 113.99865 * 59.99510 * 4 2 1 33 33 H 1.08998 * 109.47132 * 65.41993 * 5 2 1 34 34 H 1.09000 * 109.47023 * 305.41535 * 5 2 1 35 35 H 1.07995 * 119.97982 * 359.95576 * 10 9 7 36 36 H 1.08008 * 119.87689 * 180.02562 * 11 10 9 37 37 H 1.07993 * 119.90452 * 180.25662 * 12 11 10 38 38 H 0.96995 * 120.00207 * 180.02562 * 18 17 15 39 39 H 1.07996 * 120.12367 * 180.27060 * 23 13 12 40 40 H 1.09003 * 109.47266 * 21.31539 * 26 24 6 41 41 H 1.08995 * 109.47298 * 141.32015 * 26 24 6 42 42 H 1.09005 * 109.47122 * 261.32261 * 26 24 6 43 43 H 1.08994 * 109.46974 * 240.27405 * 27 24 6 44 44 H 1.09004 * 109.47201 * 0.27441 * 27 24 6 45 45 H 0.96702 * 113.99908 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.4992 -0.6093 1.3162 7 6 4.0669 0.3784 2.0364 8 8 3.3935 1.3144 2.4209 9 6 5.5089 0.3234 2.3589 10 6 6.4437 0.0836 1.3492 11 6 7.7896 0.0330 1.6516 12 6 8.2188 0.2242 2.9511 13 6 7.2956 0.4587 3.9659 14 16 7.8475 0.6957 5.6222 15 6 7.6729 -0.9449 6.2408 16 1 7.3833 -1.7448 5.5755 17 6 7.9076 -1.2091 7.5823 18 7 8.2602 -0.2341 8.3932 19 14 7.7233 -2.9485 8.2379 20 1 8.6649 -3.8486 7.5249 21 1 8.0271 -2.9645 9.6914 22 1 6.3306 -3.4151 8.0186 23 6 5.9394 0.5112 3.6711 24 6 4.3413 -1.5709 0.6004 25 1 3.7557 -2.4581 0.3598 26 6 4.8570 -0.9344 -0.6918 27 6 5.5271 -1.9662 1.4827 28 8 5.5013 -3.3765 1.7115 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.7209 -0.2702 -1.9980 33 1 1.7581 -1.7731 1.2020 34 1 1.5996 -0.2665 2.1366 35 1 6.1133 -0.0627 0.3315 36 1 8.5104 -0.1522 0.8687 37 1 9.2734 0.1876 3.1807 38 1 8.4247 -0.4189 9.3311 39 1 5.2211 0.6973 4.4558 40 1 4.8100 0.1513 -0.6060 41 1 5.8890 -1.2412 -0.8613 42 1 4.2391 -1.2596 -1.5288 43 1 6.4575 -1.6961 0.9834 44 1 5.4611 -1.4422 2.4363 45 1 6.2262 -3.6986 2.2645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189281227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:16 Heat of formation + Delta-G solvation = -57.771942 kcal Electronic energy + Delta-G solvation = -28407.375532 eV Core-core repulsion = 24518.420686 eV Total energy + Delta-G solvation = -3888.954845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.34779 -38.48818 -37.59417 -36.98100 -35.31417 -32.88499 -32.53790 -31.12286 -30.88435 -30.09004 -26.86666 -25.98734 -25.60555 -23.47547 -22.96959 -21.76737 -21.58950 -19.24195 -18.04553 -17.61887 -17.54828 -16.84915 -16.41213 -16.10061 -15.64242 -15.22941 -14.88317 -14.78752 -14.56862 -14.43268 -13.85286 -13.66722 -13.54914 -13.23547 -13.06654 -12.91316 -12.90413 -12.79330 -12.28086 -12.21503 -11.98720 -11.87555 -11.41633 -11.25874 -11.22573 -11.11609 -11.09881 -10.79478 -10.54826 -10.27578 -10.05561 -9.89604 -9.70784 -9.17843 -8.92290 -8.77198 -8.34656 -7.87783 -6.73282 -6.31107 -4.05419 1.27477 1.62338 2.70489 2.84224 3.15959 3.19558 3.23800 3.43461 3.92033 3.97382 4.12850 4.20356 4.51263 4.63214 4.78455 4.87584 4.91010 5.04039 5.04880 5.15807 5.20227 5.22035 5.23926 5.41983 5.44022 5.45936 5.56600 5.61217 5.64374 5.69053 5.71317 5.79580 5.84115 5.88188 5.98698 6.07684 6.22890 6.46205 6.56293 6.62579 6.91912 7.15035 7.29250 7.38094 7.52949 7.67664 8.13137 8.28263 9.13932 10.75323 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.003390 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.152468 B = 8258.159992 C = 8432.464659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.061 0.939 4 O -0.561 6.561 5 C 0.126 3.874 6 N -0.603 5.603 7 C 0.567 3.433 8 O -0.529 6.529 9 C -0.148 4.148 10 C -0.114 4.114 11 C -0.152 4.152 12 C -0.061 4.061 13 C -0.104 4.104 14 S -0.035 6.035 15 C -0.521 4.521 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.870 5.870 19 Si 0.920 3.080 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.273 1.273 23 C -0.036 4.036 24 C 0.147 3.853 25 H 0.102 0.898 26 C -0.163 4.163 27 C 0.028 3.972 28 O -0.582 6.582 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.373 0.627 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.148 0.852 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.270 0.730 39 H 0.132 0.868 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.195 -2.477 -19.970 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.026 3.974 3 H 0.079 0.921 4 O -0.367 6.367 5 C 0.003 3.997 6 N -0.337 5.337 7 C 0.356 3.644 8 O -0.405 6.405 9 C -0.153 4.153 10 C -0.132 4.132 11 C -0.172 4.172 12 C -0.082 4.082 13 C -0.215 4.215 14 S 0.200 5.800 15 C -0.668 4.668 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.505 5.505 19 Si 0.746 3.254 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.198 1.198 23 C -0.058 4.058 24 C 0.043 3.957 25 H 0.120 0.880 26 C -0.221 4.221 27 C -0.049 4.049 28 O -0.389 6.389 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.220 0.780 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.165 0.835 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.149 0.851 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -9.381 -1.312 -18.866 21.110 hybrid contribution -0.406 -1.795 -0.277 1.861 sum -9.787 -3.106 -19.143 21.723 Atomic orbital electron populations 1.22443 0.96039 1.02846 1.02807 1.22240 0.92739 0.96156 0.86311 0.92133 1.86548 1.76931 1.57469 1.15704 1.21561 0.79694 1.01524 0.96878 1.47894 1.06223 1.29662 1.49893 1.18527 0.87722 0.81309 0.76829 1.90762 1.64407 1.32144 1.53228 1.19610 0.92277 1.07823 0.95581 1.22081 0.93607 0.97032 1.00491 1.21042 0.95029 1.04166 0.96955 1.21883 1.00031 0.94374 0.91886 1.22742 0.94398 1.01607 1.02740 1.83659 1.83291 1.16511 0.96549 1.22771 1.54639 0.92599 0.96809 0.90772 1.24997 0.94452 0.98488 0.95600 1.69975 1.43438 1.31772 1.05282 0.86197 0.78963 0.82457 0.77825 1.19779 1.20725 1.19836 1.21752 0.95935 0.93982 0.94090 1.20998 0.91902 0.92014 0.90743 0.87962 1.22492 1.00896 1.01096 0.97579 1.25015 0.97491 0.81731 1.00614 1.86358 1.54646 1.23378 1.74499 0.91695 0.91284 0.92182 0.77996 0.89795 0.88444 0.83499 0.85846 0.85208 0.91973 0.85058 0.91609 0.91491 0.90378 0.90105 0.89996 0.76903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.53 37.16 0.35 -0.96 16 2 C 0.09 0.79 3.82 -26.73 -0.10 0.69 16 3 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 4 O -0.56 -4.61 10.61 -35.23 -0.37 -4.99 16 5 C 0.13 1.44 5.10 -4.04 -0.02 1.42 16 6 N -0.60 -8.08 2.34 -167.21 -0.39 -8.47 16 7 C 0.57 9.40 6.58 -12.32 -0.08 9.32 16 8 O -0.53 -10.22 16.74 5.32 0.09 -10.13 16 9 C -0.15 -2.49 3.14 -105.00 -0.33 -2.82 16 10 C -0.11 -1.59 5.32 -39.12 -0.21 -1.80 16 11 C -0.15 -2.12 9.33 -39.67 -0.37 -2.49 16 12 C -0.06 -1.06 9.79 -39.25 -0.38 -1.44 16 13 C -0.10 -2.17 5.45 -38.99 -0.21 -2.38 16 14 S -0.03 -0.88 21.41 -107.50 -2.30 -3.18 16 15 C -0.52 -14.31 9.46 30.91 0.29 -14.01 16 16 H 0.07 1.99 7.79 -52.49 -0.41 1.58 16 17 C 0.07 2.03 5.49 -17.46 -0.10 1.94 16 18 N -0.87 -25.14 13.22 55.49 0.73 -24.40 16 19 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C -0.04 -0.72 9.12 -38.92 -0.36 -1.07 16 24 C 0.15 1.77 2.64 -67.93 -0.18 1.59 16 25 H 0.10 1.26 7.59 -51.93 -0.39 0.87 16 26 C -0.16 -1.58 7.13 37.15 0.26 -1.32 16 27 C 0.03 0.37 4.91 37.16 0.18 0.55 16 28 O -0.58 -7.92 13.51 -35.23 -0.48 -8.40 16 29 H 0.06 0.45 8.14 -51.94 -0.42 0.03 16 30 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.37 1.69 9.08 45.56 0.41 2.11 16 33 H 0.08 0.87 7.92 -51.93 -0.41 0.46 16 34 H 0.10 1.18 7.51 -51.93 -0.39 0.79 16 35 H 0.15 1.69 2.49 -52.49 -0.13 1.55 16 36 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 37 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.13 2.80 8.06 -52.49 -0.42 2.38 16 40 H 0.07 0.69 6.67 -51.93 -0.35 0.34 16 41 H 0.07 0.57 6.59 -51.93 -0.34 0.22 16 42 H 0.08 0.69 6.92 -51.93 -0.36 0.34 16 43 H 0.08 0.98 4.08 -51.95 -0.21 0.77 16 44 H 0.08 1.33 4.05 -56.09 -0.23 1.10 16 45 H 0.38 4.19 9.12 45.56 0.42 4.61 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -33.25 370.38 -7.89 -41.14 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.49 Total: 9.69 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.25 Total: -12.79 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.34 Total: -32.88 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.76 Total: -23.52 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.18 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.25 -7.89 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189281227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.633 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds