Wall clock time and date at job start Tue Mar 31 2020 22:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47104 * 2 1 4 4 O 1.42899 * 109.46850 * 120.00031 * 2 1 3 5 5 C 1.53000 * 109.46416 * 240.00071 * 2 1 3 6 6 N 1.46504 * 109.46409 * 181.93339 * 5 2 1 7 7 C 1.34777 * 120.00267 * 122.29474 * 6 5 2 8 8 O 1.21544 * 120.00666 * 178.16652 * 7 6 5 9 9 C 1.47870 * 119.99669 * 358.16396 * 7 6 5 10 10 C 1.39669 * 120.10462 * 325.33487 * 9 7 6 11 11 C 1.38034 * 120.04197 * 179.97438 * 10 9 7 12 12 C 1.38179 * 120.24445 * 359.68100 * 11 10 9 13 13 C 1.39184 * 120.19679 * 0.59557 * 12 11 10 14 14 S 1.76201 * 120.01734 * 179.70322 * 13 12 11 15 15 C 1.76209 * 99.99554 * 264.77964 * 14 13 12 16 16 H 1.07994 * 119.99979 * 5.01480 * 15 14 13 17 17 C 1.38726 * 119.99775 * 185.01534 * 15 14 13 18 18 N 1.31628 * 120.00296 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47251 * 59.99829 * 19 17 15 21 21 H 1.48500 * 109.47468 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47090 * 300.00018 * 19 17 15 23 23 C 1.38878 * 119.95870 * 359.42358 * 13 12 11 24 24 C 1.46494 * 120.00019 * 302.28932 * 6 5 2 25 25 H 1.09000 * 109.47340 * 200.77141 * 24 6 5 26 26 C 1.53005 * 109.47406 * 320.76966 * 24 6 5 27 27 C 1.53004 * 109.47314 * 80.77189 * 24 6 5 28 28 O 1.42897 * 109.47095 * 64.99556 * 27 24 6 29 29 H 1.08993 * 109.47515 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46633 * 300.00317 * 1 2 3 31 31 H 1.08995 * 109.47268 * 59.99623 * 1 2 3 32 32 H 0.96702 * 114.00118 * 53.00521 * 4 2 1 33 33 H 1.08991 * 109.47538 * 61.93611 * 5 2 1 34 34 H 1.08997 * 109.47212 * 301.92588 * 5 2 1 35 35 H 1.08006 * 119.97671 * 359.97438 * 10 9 7 36 36 H 1.08003 * 119.88036 * 179.97438 * 11 10 9 37 37 H 1.08001 * 119.90408 * 180.31682 * 12 11 10 38 38 H 0.96997 * 120.00423 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.11481 * 180.29836 * 23 13 12 40 40 H 1.09000 * 109.46729 * 59.99800 * 26 24 6 41 41 H 1.08996 * 109.47026 * 179.97438 * 26 24 6 42 42 H 1.08997 * 109.46897 * 299.99781 * 26 24 6 43 43 H 1.08998 * 109.47205 * 185.00209 * 27 24 6 44 44 H 1.09001 * 109.46340 * 305.00089 * 27 24 6 45 45 H 0.96699 * 113.99666 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0399 -0.7213 -1.2493 6 7 3.5042 -0.7618 -1.2262 7 6 4.1465 -1.9456 -1.2757 8 8 5.3615 -1.9778 -1.2902 9 6 3.3731 -3.2054 -1.3123 10 6 2.1673 -3.3076 -0.6149 11 6 1.4461 -4.4840 -0.6504 12 6 1.9090 -5.5624 -1.3799 13 6 3.1122 -5.4735 -2.0740 14 16 3.7018 -6.8542 -2.9963 15 6 4.7778 -7.5808 -1.8050 16 1 4.8293 -7.1752 -0.8055 17 6 5.5587 -8.6739 -2.1512 18 7 5.4956 -9.1686 -3.3694 19 14 6.6989 -9.4447 -0.8882 20 1 5.9027 -9.9249 0.2696 21 1 7.4182 -10.5888 -1.5036 22 1 7.6828 -8.4326 -0.4266 23 6 3.8447 -4.2940 -2.0437 24 6 4.2703 0.4845 -1.1495 25 1 5.2854 0.3096 -1.5059 26 6 3.6005 1.5495 -2.0203 27 6 4.3155 0.9669 0.3018 28 8 5.0433 0.0263 1.0940 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6363 -1.5587 1.2886 33 1 1.7052 -0.1878 -2.1389 34 1 1.6486 -1.7384 -1.2667 35 1 1.7990 -2.4656 -0.0476 36 1 0.5142 -4.5604 -0.1099 37 1 1.3377 -6.4786 -1.4080 38 1 6.0419 -9.9326 -3.6116 39 1 4.7762 -4.2207 -2.5853 40 1 2.5854 1.7244 -1.6638 41 1 4.1703 2.4769 -1.9628 42 1 3.5684 1.2059 -3.0541 43 1 4.8082 1.9381 0.3467 44 1 3.2996 1.0568 0.6865 45 1 5.1119 0.2683 2.0277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189281248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:19 Heat of formation + Delta-G solvation = -109.759214 kcal Electronic energy + Delta-G solvation = -28222.371550 eV Core-core repulsion = 24331.162368 eV Total energy + Delta-G solvation = -3891.209182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.91442 -39.55744 -38.94993 -37.64795 -36.23019 -34.67137 -33.57709 -32.17183 -32.01187 -31.27261 -27.77912 -27.65141 -26.91538 -25.13842 -24.06657 -22.54798 -22.27401 -20.78134 -19.93881 -18.71007 -18.13459 -18.10632 -17.61311 -16.94777 -16.88739 -16.80982 -16.40375 -16.07414 -15.67597 -15.37755 -15.19141 -14.90821 -14.75728 -14.57040 -14.32442 -13.99694 -13.55501 -13.44633 -13.25724 -13.24824 -13.17676 -12.98507 -12.79241 -12.70740 -12.65388 -12.49612 -12.45311 -11.95849 -11.76395 -11.57398 -11.32447 -11.24177 -11.03796 -10.73685 -10.44360 -10.01163 -9.68952 -9.54013 -8.81578 -8.41082 -6.20897 -0.14033 0.20556 1.27544 1.37205 1.42268 1.59857 1.79443 1.90156 2.22255 2.67508 2.91832 3.21539 3.38823 3.42103 3.50765 3.70060 3.91117 3.94368 3.97060 4.09179 4.16409 4.29765 4.33638 4.40222 4.43527 4.48238 4.51557 4.64042 4.65076 4.71288 4.75785 4.87535 4.96066 4.99519 5.14736 5.19174 5.24988 5.26536 5.36434 5.37940 5.48159 5.59731 5.83199 6.13812 6.31676 6.76307 6.97849 6.99463 7.14261 8.65648 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016089 B = 0.003194 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.874993 B = 8764.945847 C = 9388.380480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.113 0.887 4 O -0.565 6.565 5 C 0.028 3.972 6 N -0.577 5.577 7 C 0.561 3.439 8 O -0.582 6.582 9 C -0.146 4.146 10 C -0.084 4.084 11 C -0.114 4.114 12 C -0.065 4.065 13 C -0.123 4.123 14 S -0.088 6.088 15 C -0.540 4.540 16 H 0.064 0.936 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 0.988 3.012 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.275 1.275 23 C -0.053 4.053 24 C 0.129 3.871 25 H 0.060 0.940 26 C -0.151 4.151 27 C 0.058 3.942 28 O -0.586 6.586 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.378 0.622 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.171 0.829 36 H 0.183 0.817 37 H 0.139 0.861 38 H 0.275 0.725 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.583 24.752 8.905 30.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.023 3.977 3 H 0.131 0.869 4 O -0.374 6.374 5 C -0.094 4.094 6 N -0.308 5.308 7 C 0.351 3.649 8 O -0.462 6.462 9 C -0.151 4.151 10 C -0.102 4.102 11 C -0.133 4.133 12 C -0.086 4.086 13 C -0.234 4.234 14 S 0.147 5.853 15 C -0.687 4.687 16 H 0.082 0.918 17 C -0.183 4.183 18 N -0.541 5.541 19 Si 0.810 3.190 20 H -0.184 1.184 21 H -0.192 1.192 22 H -0.200 1.200 23 C -0.075 4.075 24 C 0.025 3.975 25 H 0.078 0.922 26 C -0.209 4.209 27 C -0.020 4.020 28 O -0.392 6.392 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.229 0.771 33 H 0.118 0.882 34 H 0.135 0.865 35 H 0.188 0.812 36 H 0.200 0.800 37 H 0.157 0.843 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -14.733 24.480 7.129 29.448 hybrid contribution 1.413 -0.636 1.706 2.305 sum -13.319 23.844 8.836 28.706 Atomic orbital electron populations 1.22484 0.93278 1.04162 1.04209 1.22531 0.94646 0.97172 0.83328 0.86922 1.86710 1.71988 1.33954 1.44731 1.23513 0.78737 1.06057 1.01081 1.47531 1.07242 1.04350 1.71648 1.18485 0.86603 0.84504 0.75345 1.90740 1.16033 1.87642 1.51783 1.19957 0.98009 0.93770 1.03395 1.21907 0.91734 0.99046 0.97506 1.21609 1.01752 0.91128 0.98834 1.22063 0.93662 0.99984 0.92908 1.22509 0.99013 0.98008 1.03846 1.83369 1.55691 1.23346 1.22928 1.23038 1.28918 1.18241 0.98506 0.91798 1.25955 0.97728 0.96340 0.98244 1.70086 1.40078 1.24141 1.19769 0.85153 0.77929 0.77738 0.78172 1.18366 1.19217 1.19986 1.21527 0.97479 0.91894 0.96604 1.21241 0.96127 0.84210 0.95872 0.92196 1.22064 1.02330 0.97441 0.99056 1.23012 0.97408 0.91108 0.90430 1.86624 1.77358 1.50712 1.24532 0.90900 0.90830 0.89769 0.77134 0.88206 0.86539 0.81185 0.79994 0.84311 0.91613 0.88702 0.89386 0.89083 0.91818 0.91911 0.89976 0.76633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.87 9.48 71.98 0.68 -0.19 16 2 C 0.08 0.82 2.42 30.60 0.07 0.90 16 3 H 0.11 0.98 4.43 -2.39 -0.01 0.97 16 4 O -0.57 -8.17 11.58 -148.98 -1.73 -9.90 16 5 C 0.03 0.41 4.07 86.38 0.35 0.76 16 6 N -0.58 -14.32 2.40 -801.20 -1.93 -16.24 16 7 C 0.56 20.55 7.35 86.79 0.64 21.19 16 8 O -0.58 -27.54 16.26 -3.85 -0.06 -27.61 16 9 C -0.15 -5.21 5.45 -20.11 -0.11 -5.32 16 10 C -0.08 -2.07 7.39 22.57 0.17 -1.90 16 11 C -0.11 -2.70 10.02 22.21 0.22 -2.48 16 12 C -0.07 -2.25 9.79 22.48 0.22 -2.03 16 13 C -0.12 -5.52 5.45 22.65 0.12 -5.39 16 14 S -0.09 -4.88 21.41 -56.49 -1.21 -6.09 16 15 C -0.54 -32.66 9.46 67.94 0.64 -32.02 16 16 H 0.06 3.87 7.79 -2.91 -0.02 3.85 16 17 C 0.02 1.34 5.49 84.84 0.47 1.81 16 18 N -0.90 -55.40 13.22 21.64 0.29 -55.11 16 19 Si 0.99 46.08 29.55 68.60 2.03 48.11 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 23 C -0.05 -2.37 9.36 22.70 0.21 -2.16 16 24 C 0.13 2.87 2.68 45.00 0.12 2.99 16 25 H 0.06 1.85 7.15 -2.39 -0.02 1.83 16 26 C -0.15 -1.87 8.44 71.98 0.61 -1.27 16 27 C 0.06 1.10 5.97 71.98 0.43 1.53 16 28 O -0.59 -15.54 13.56 -148.98 -2.02 -17.56 16 29 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.38 4.03 6.76 -74.06 -0.50 3.53 16 33 H 0.10 1.08 7.27 -2.39 -0.02 1.07 16 34 H 0.12 1.84 3.32 -4.93 -0.02 1.82 16 35 H 0.17 2.73 2.62 -2.91 -0.01 2.72 16 36 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 37 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 38 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.09 4.85 7.99 -2.91 -0.02 4.83 16 40 H 0.09 0.63 5.67 -2.39 -0.01 0.62 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 1.24 3.79 -2.39 -0.01 1.23 16 45 H 0.39 6.86 9.12 -74.06 -0.68 6.18 16 Total: -1.00 -88.36 371.31 0.09 -88.27 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.13 Total: 19.72 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 4.85 Total: -23.59 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -1.64 Total: -71.35 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -3.81 Total: -55.06 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -1.21 Total: -6.09 kcal Total: -88.36 0.09 -88.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189281248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.487 kcal (2) G-P(sol) polarization free energy of solvation -88.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds