Wall clock time and date at job start Tue Mar 31 2020 22:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47286 * 2 1 4 4 O 1.42900 * 109.47033 * 119.99732 * 2 1 3 5 5 C 1.53001 * 109.47036 * 239.99760 * 2 1 3 6 6 N 1.46497 * 109.47226 * 180.02562 * 5 2 1 7 7 C 1.34779 * 119.99954 * 89.99800 * 6 5 2 8 8 O 1.21551 * 119.99886 * 324.11956 * 7 6 5 9 9 C 1.47867 * 119.99947 * 144.12213 * 7 6 5 10 10 C 1.39677 * 120.09871 * 28.72672 * 9 7 6 11 11 C 1.38038 * 120.03828 * 179.97438 * 10 9 7 12 12 C 1.38178 * 120.24169 * 359.74744 * 11 10 9 13 13 C 1.39187 * 120.20410 * 0.50640 * 12 11 10 14 14 S 1.76197 * 120.02406 * 179.76595 * 13 12 11 15 15 C 1.76195 * 100.00286 * 264.77131 * 14 13 12 16 16 H 1.08001 * 119.99997 * 5.00643 * 15 14 13 17 17 C 1.38726 * 120.00311 * 185.01061 * 15 14 13 18 18 N 1.31625 * 119.99804 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00245 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47445 * 60.00055 * 19 17 15 21 21 H 1.48504 * 109.47266 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.47231 * 299.99530 * 19 17 15 23 23 C 1.38875 * 119.95282 * 359.49341 * 13 12 11 24 24 C 1.46503 * 119.99986 * 270.00003 * 6 5 2 25 25 H 1.08995 * 109.46609 * 20.73854 * 24 6 5 26 26 C 1.52996 * 109.46844 * 260.73633 * 24 6 5 27 27 C 1.52998 * 109.47012 * 140.73660 * 24 6 5 28 28 O 1.42906 * 109.47100 * 292.11250 * 27 24 6 29 29 H 1.08995 * 109.47566 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47228 * 300.00630 * 1 2 3 31 31 H 1.09001 * 109.46942 * 59.99862 * 1 2 3 32 32 H 0.96701 * 113.99856 * 59.99630 * 4 2 1 33 33 H 1.08995 * 109.47236 * 60.00051 * 5 2 1 34 34 H 1.09007 * 109.46865 * 300.00365 * 5 2 1 35 35 H 1.08003 * 119.97984 * 0.02562 * 10 9 7 36 36 H 1.07997 * 119.87876 * 180.02562 * 11 10 9 37 37 H 1.07997 * 119.90226 * 180.25034 * 12 11 10 38 38 H 0.97000 * 120.00465 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.11786 * 180.23247 * 23 13 12 40 40 H 1.08997 * 109.47633 * 90.58939 * 26 24 6 41 41 H 1.09004 * 109.46927 * 210.58820 * 26 24 6 42 42 H 1.08995 * 109.46988 * 330.58414 * 26 24 6 43 43 H 1.08998 * 109.47395 * 52.10962 * 27 24 6 44 44 H 1.08999 * 109.47076 * 172.12037 * 27 24 6 45 45 H 0.96700 * 114.00096 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5049 -0.7219 -1.2490 7 6 4.1783 -1.7330 -0.6653 8 8 3.7432 -2.2496 0.3453 9 6 5.4465 -2.2139 -1.2543 10 6 6.2555 -1.3401 -1.9844 11 6 7.4394 -1.7902 -2.5332 12 6 7.8322 -3.1035 -2.3593 13 6 7.0312 -3.9843 -1.6381 14 16 7.5337 -5.6595 -1.4244 15 6 6.6598 -6.4133 -2.7557 16 1 6.1045 -5.8023 -3.4519 17 6 6.6849 -7.7918 -2.9098 18 7 7.3620 -8.5365 -2.0616 19 14 5.7578 -8.5910 -4.3208 20 1 6.2813 -8.0763 -5.6116 21 1 5.9431 -10.0634 -4.2639 22 1 4.3124 -8.2689 -4.2089 23 6 5.8385 -3.5403 -1.0822 24 6 4.2380 0.3767 -1.8831 25 1 3.5876 1.2475 -1.9655 26 6 4.6941 -0.0533 -3.2787 27 6 5.4602 0.7315 -1.0338 28 8 5.0308 1.3056 0.2024 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.7209 -1.5951 1.2330 33 1 1.6767 -0.2075 -2.1392 34 1 1.6765 -1.7490 -1.2492 35 1 5.9550 -0.3115 -2.1188 36 1 8.0631 -1.1123 -3.0969 37 1 8.7615 -3.4488 -2.7877 38 1 7.3793 -9.5004 -2.1690 39 1 5.2168 -4.2204 -0.5189 40 1 3.9289 0.2109 -4.0086 41 1 5.6256 0.4545 -3.5290 42 1 4.8530 -1.1315 -3.2929 43 1 6.0381 -0.1708 -0.8340 44 1 6.0804 1.4487 -1.5714 45 1 5.7549 1.5558 0.7924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189281291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:27 Heat of formation + Delta-G solvation = -20.050612 kcal Electronic energy + Delta-G solvation = -28366.690849 eV Core-core repulsion = 24479.371723 eV Total energy + Delta-G solvation = -3887.319126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46132 -38.32794 -37.57471 -36.97950 -35.45910 -32.91064 -32.52242 -31.00144 -30.68291 -29.96383 -26.83107 -26.25546 -25.58848 -23.55787 -23.06169 -21.75362 -21.52007 -19.04051 -18.07329 -17.82512 -17.16885 -17.02552 -16.12532 -15.74821 -15.51306 -15.30927 -14.96165 -14.86831 -14.42348 -14.12927 -14.01789 -13.73828 -13.72433 -13.38503 -12.94426 -12.80071 -12.74195 -12.48427 -12.33922 -12.10684 -11.91258 -11.69280 -11.49791 -11.16710 -11.09990 -11.08078 -10.98275 -10.85903 -10.60384 -10.14257 -9.94020 -9.73547 -9.61611 -9.16499 -8.86294 -8.64563 -8.37137 -7.90286 -6.71668 -6.29612 -4.03643 1.20571 1.65187 2.88575 2.90534 3.17603 3.20224 3.24447 3.45137 3.83344 4.02619 4.21194 4.45640 4.47586 4.53737 4.63090 4.74181 4.97950 5.02290 5.06241 5.06564 5.11914 5.16920 5.21428 5.31563 5.33780 5.38467 5.47011 5.49476 5.54727 5.68350 5.75892 5.85577 5.87766 5.96812 6.03077 6.07987 6.26431 6.55124 6.62746 6.66123 6.94231 7.19700 7.44173 7.50032 7.55191 7.90509 8.27979 8.30536 9.15561 10.76905 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.003456 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.319834 B = 8100.432787 C = 8959.138140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.087 3.913 3 H 0.095 0.905 4 O -0.540 6.540 5 C 0.095 3.905 6 N -0.621 5.621 7 C 0.581 3.419 8 O -0.497 6.497 9 C -0.163 4.163 10 C -0.145 4.145 11 C -0.153 4.153 12 C -0.055 4.055 13 C -0.110 4.110 14 S -0.035 6.035 15 C -0.521 4.521 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.870 5.870 19 Si 0.920 3.080 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.273 1.273 23 C -0.020 4.020 24 C 0.147 3.853 25 H 0.096 0.904 26 C -0.185 4.185 27 C 0.008 3.992 28 O -0.562 6.562 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.374 0.626 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.181 0.819 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.270 0.730 39 H 0.134 0.866 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 21.098 -1.887 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.026 3.974 3 H 0.113 0.887 4 O -0.345 6.345 5 C -0.028 4.028 6 N -0.356 5.356 7 C 0.371 3.629 8 O -0.370 6.370 9 C -0.168 4.168 10 C -0.162 4.162 11 C -0.173 4.173 12 C -0.076 4.076 13 C -0.220 4.220 14 S 0.199 5.801 15 C -0.668 4.668 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.505 5.505 19 Si 0.746 3.254 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.199 1.199 23 C -0.042 4.042 24 C 0.042 3.958 25 H 0.114 0.886 26 C -0.243 4.243 27 C -0.069 4.069 28 O -0.367 6.367 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.222 0.778 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.197 0.803 36 H 0.140 0.860 37 H 0.147 0.853 38 H 0.080 0.920 39 H 0.152 0.848 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.120 0.880 44 H 0.078 0.922 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.057 20.522 -0.630 21.710 hybrid contribution -1.100 -0.274 -1.882 2.197 sum -8.157 20.248 -2.512 21.973 Atomic orbital electron populations 1.22505 0.96846 1.02498 1.02505 1.22252 0.91861 0.97212 0.86073 0.88735 1.86647 1.77145 1.28839 1.41914 1.22204 0.79974 1.01970 0.98697 1.47297 1.05297 1.22738 1.60297 1.18249 0.83945 0.78612 0.82096 1.90683 1.68466 1.57726 1.20150 1.20037 0.96597 0.95733 1.04472 1.23480 0.95009 1.02339 0.95395 1.21083 0.97514 0.96282 1.02409 1.21944 0.98904 0.92630 0.94123 1.22789 0.96486 1.03068 0.99689 1.83620 1.62334 0.90499 1.43610 1.22788 1.37064 0.94106 1.12851 0.90762 1.24993 0.95410 0.96063 0.97065 1.69977 1.39119 1.06013 1.35401 0.86192 0.79980 0.77975 0.81244 1.19830 1.20706 1.19867 1.21868 0.94765 0.93385 0.94144 1.21070 0.93516 0.89934 0.91244 0.88638 1.22963 1.01618 1.04534 0.95193 1.24382 0.96385 0.99435 0.86728 1.86543 1.37240 1.83658 1.29308 0.92312 0.91764 0.91907 0.77833 0.90072 0.90519 0.80287 0.86020 0.85293 0.91989 0.84813 0.91984 0.90948 0.89169 0.87970 0.92185 0.77504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 9.53 37.16 0.35 -1.19 16 2 C 0.09 0.96 3.86 -26.73 -0.10 0.85 16 3 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 4 O -0.54 -7.88 11.31 -57.38 -0.65 -8.53 16 5 C 0.09 1.02 5.15 -4.04 -0.02 1.00 16 6 N -0.62 -7.91 2.32 -167.21 -0.39 -8.30 16 7 C 0.58 9.60 6.09 -12.32 -0.07 9.52 16 8 O -0.50 -9.58 14.16 -16.83 -0.24 -9.82 16 9 C -0.16 -2.76 5.00 -105.00 -0.52 -3.28 16 10 C -0.15 -1.96 4.01 -39.12 -0.16 -2.12 16 11 C -0.15 -2.14 10.02 -39.68 -0.40 -2.53 16 12 C -0.05 -0.97 9.79 -39.25 -0.38 -1.36 16 13 C -0.11 -2.33 5.45 -38.99 -0.21 -2.54 16 14 S -0.04 -0.91 21.41 -107.50 -2.30 -3.21 16 15 C -0.52 -14.58 9.46 30.91 0.29 -14.29 16 16 H 0.07 2.05 7.79 -52.49 -0.41 1.64 16 17 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 18 N -0.87 -25.36 13.22 55.49 0.73 -24.62 16 19 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 23 C -0.02 -0.40 9.34 -38.92 -0.36 -0.77 16 24 C 0.15 1.47 2.85 -67.93 -0.19 1.27 16 25 H 0.10 0.82 8.00 -51.93 -0.42 0.41 16 26 C -0.19 -1.63 8.06 37.16 0.30 -1.33 16 27 C 0.01 0.08 4.85 37.16 0.18 0.26 16 28 O -0.56 -6.46 13.64 -35.23 -0.48 -6.94 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.37 5.07 8.12 45.56 0.37 5.44 16 33 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 34 H 0.08 0.88 8.02 -51.92 -0.42 0.46 16 35 H 0.18 1.88 0.80 -117.04 -0.09 1.78 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.13 2.92 7.90 -52.49 -0.41 2.51 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.50 7.07 -51.93 -0.37 0.13 16 42 H 0.09 1.05 5.13 -51.93 -0.27 0.79 16 43 H 0.10 1.23 3.35 -86.57 -0.29 0.94 16 44 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 45 H 0.38 2.92 9.12 45.56 0.42 3.33 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -34.55 372.33 -8.95 -43.50 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -4.81 Total: 10.67 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -1.40 Total: -14.55 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.35 Total: -32.92 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -1.37 Total: -25.29 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.55 -8.95 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189281291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.445 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds