Wall clock time and date at job start Tue Mar 31 2020 22:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 S 1.81401 * 109.46777 * 180.02562 * 15 13 12 17 17 O 1.42099 * 108.57902 * 294.48274 * 16 15 13 18 18 O 1.42098 * 108.57888 * 65.51310 * 16 15 13 19 19 C 1.81403 * 101.91953 * 179.97438 * 16 15 13 20 20 C 1.52996 * 109.47233 * 179.97438 * 19 16 15 21 21 C 1.52998 * 109.47237 * 179.97438 * 20 19 16 22 22 C 1.50697 * 109.47155 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00314 * 269.72646 * 22 21 20 24 24 C 1.38229 * 120.00010 * 179.76441 * 23 22 21 25 25 C 1.38236 * 120.00323 * 0.51600 * 24 23 22 26 26 C 1.38241 * 119.99802 * 359.73771 * 25 24 23 27 27 C 1.38238 * 119.99644 * 90.00390 * 22 21 20 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 33 33 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 34 34 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 35 35 H 1.08997 * 109.47030 * 300.00250 * 19 16 15 36 36 H 1.08999 * 109.46974 * 59.99635 * 19 16 15 37 37 H 1.08997 * 109.47541 * 300.00212 * 20 19 16 38 38 H 1.09004 * 109.46911 * 60.00403 * 20 19 16 39 39 H 1.09000 * 109.47721 * 300.00496 * 21 20 19 40 40 H 1.09004 * 109.46636 * 60.00485 * 21 20 19 41 41 H 1.08004 * 120.00018 * 0.02562 * 23 22 21 42 42 H 1.08004 * 120.00413 * 180.23692 * 24 23 22 43 43 H 1.08001 * 120.00748 * 179.72668 * 25 24 23 44 44 H 1.08001 * 120.00175 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.00486 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 16 2.7100 0.4372 4.9763 17 8 3.6851 1.4308 4.6915 18 8 1.3829 0.8370 5.2896 19 6 3.3290 -0.6126 6.3200 20 6 3.4486 0.2158 7.6006 21 6 3.9702 -0.6698 8.7341 22 6 4.0886 0.1464 9.9954 23 6 5.2693 0.8045 10.2846 24 6 5.3762 1.5570 11.4391 25 6 4.3060 1.6429 12.3098 26 6 3.1269 0.9806 12.0233 27 6 3.0182 0.2322 10.8660 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7088 1.1611 -3.4845 32 1 2.2490 -1.6316 1.1527 33 1 1.9776 -1.5506 3.8326 34 1 3.6492 -1.1202 3.3980 35 1 2.6368 -1.4384 6.4842 36 1 4.3085 -1.0078 6.0504 37 1 4.1411 1.0413 7.4361 38 1 2.4693 0.6112 7.8703 39 1 3.2774 -1.4951 8.8986 40 1 4.9494 -1.0656 8.4646 41 1 6.1069 0.7341 9.6064 42 1 6.2974 2.0744 11.6632 43 1 4.3909 2.2273 13.2141 44 1 2.2909 1.0473 12.7037 45 1 2.0974 -0.2859 10.6426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194642191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:32 Heat of formation + Delta-G solvation = -125.469200 kcal Electronic energy + Delta-G solvation = -25992.817009 eV Core-core repulsion = 22100.926590 eV Total energy + Delta-G solvation = -3891.890419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74707 -40.16095 -37.98156 -37.05354 -36.84284 -36.18078 -34.45717 -32.32429 -32.06965 -31.73054 -29.97208 -27.71253 -27.36714 -23.87102 -23.43336 -23.16547 -21.74066 -21.41943 -19.83536 -19.15047 -18.16814 -17.60461 -17.52857 -17.40043 -16.96013 -16.74637 -16.51444 -16.04455 -15.94347 -15.70784 -15.27700 -14.82035 -14.55528 -14.46896 -14.22338 -14.06716 -13.92635 -13.53583 -13.21547 -13.21353 -13.07110 -13.01928 -12.98182 -12.88266 -12.86288 -12.76443 -12.30004 -12.19537 -12.02002 -12.00623 -11.89883 -11.60609 -11.35136 -11.18531 -11.09626 -10.62345 -9.91555 -9.78949 -9.57210 -8.19072 -6.37884 -1.07474 0.47476 0.53215 1.44950 1.47630 1.53685 1.55923 1.84748 2.16939 2.43503 2.87229 2.99829 3.10012 3.11691 3.54658 3.68779 3.82411 4.01264 4.10496 4.11482 4.21167 4.25083 4.34265 4.34404 4.44734 4.65081 4.70123 4.70571 4.71077 4.82399 4.88104 5.01874 5.03718 5.15076 5.22762 5.27426 5.36546 5.52589 5.61049 5.61625 5.66438 5.75360 5.82157 6.04674 6.16940 6.67815 6.71963 7.25660 7.40606 8.87358 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.037986 B = 0.001798 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.933134 B =15571.129649 C =15750.885111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.262 3.738 3 H -0.002 1.002 4 C -0.548 4.548 5 H 0.080 0.920 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.978 3.022 9 H -0.288 1.288 10 H -0.270 1.270 11 H -0.261 1.261 12 N -0.689 5.689 13 C 0.509 3.491 14 O -0.604 6.604 15 C -0.641 4.641 16 S 2.421 3.579 17 O -0.982 6.982 18 O -0.980 6.980 19 C -0.575 4.575 20 C -0.120 4.120 21 C -0.066 4.066 22 C -0.099 4.099 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.132 4.132 27 C -0.132 4.132 28 H 0.010 0.990 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.266 0.734 32 H 0.414 0.586 33 H 0.206 0.794 34 H 0.204 0.796 35 H 0.180 0.820 36 H 0.179 0.821 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.947 -11.086 28.132 31.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.159 3.841 3 H 0.016 0.984 4 C -0.586 4.586 5 H 0.098 0.902 6 C -0.189 4.189 7 N -0.557 5.557 8 Si 0.802 3.198 9 H -0.214 1.214 10 H -0.195 1.195 11 H -0.186 1.186 12 N -0.338 5.338 13 C 0.295 3.705 14 O -0.487 6.487 15 C -0.770 4.770 16 S 2.607 3.393 17 O -0.979 6.979 18 O -0.977 6.977 19 C -0.708 4.708 20 C -0.159 4.159 21 C -0.105 4.105 22 C -0.100 4.100 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.155 4.155 26 C -0.150 4.150 27 C -0.150 4.150 28 H 0.029 0.971 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.250 0.750 33 H 0.223 0.777 34 H 0.222 0.778 35 H 0.198 0.802 36 H 0.197 0.803 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.400 -9.246 27.935 30.601 hybrid contribution 0.201 -0.708 -1.142 1.359 sum 8.601 -9.954 26.793 29.848 Atomic orbital electron populations 1.21935 0.98100 0.99884 0.99700 1.18494 0.91428 0.92178 0.82031 0.98391 1.21497 1.32888 1.13792 0.90417 0.90176 1.25887 0.94830 0.95593 1.02597 1.70065 1.36861 1.23972 1.24778 0.85313 0.78618 0.78686 0.77191 1.21420 1.19479 1.18551 1.46138 1.64016 1.14518 1.09086 1.20227 0.77959 0.86610 0.85717 1.90805 1.53724 1.18365 1.85825 1.30750 1.15559 1.19322 1.11345 1.07826 0.74599 0.78312 0.78515 1.93504 1.62870 1.56744 1.84773 1.93501 1.39239 1.81286 1.83717 1.30166 1.16507 1.14011 1.10126 1.21442 1.03190 0.98579 0.92726 1.20594 1.04015 0.96664 0.89211 1.20167 0.94067 0.98822 0.96903 1.21392 0.98149 0.97647 0.97817 1.21463 0.99623 0.99098 0.94801 1.21469 0.93638 1.00026 1.00374 1.21469 0.98465 0.97360 0.97678 1.21396 0.99007 0.99859 0.94722 0.97074 0.91331 0.93410 0.92506 0.74958 0.77680 0.77843 0.80235 0.80327 0.91021 0.90958 0.88431 0.88492 0.84773 0.84674 0.84660 0.84646 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.08 9.26 71.98 0.67 -6.42 16 2 C 0.26 13.75 2.56 44.24 0.11 13.86 16 3 H 0.00 -0.12 7.58 -2.38 -0.02 -0.13 16 4 C -0.55 -28.60 8.73 25.60 0.22 -28.38 16 5 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -53.17 11.32 21.45 0.24 -52.92 16 8 Si 0.98 41.44 29.54 68.60 2.03 43.47 16 9 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 12 N -0.69 -27.68 5.07 -446.09 -2.26 -29.94 16 13 C 0.51 20.11 7.81 87.66 0.68 20.79 16 14 O -0.60 -31.50 15.29 -0.16 0.00 -31.50 16 15 C -0.64 -13.27 6.29 71.24 0.45 -12.82 16 16 S 2.42 61.82 3.96 -56.49 -0.22 61.59 16 17 O -0.98 -35.33 17.95 -125.74 -2.26 -37.59 16 18 O -0.98 -34.84 17.95 -125.75 -2.26 -37.10 16 19 C -0.57 -5.24 5.81 71.98 0.42 -4.82 16 20 C -0.12 -1.65 5.20 30.59 0.16 -1.50 16 21 C -0.07 -0.62 5.35 29.85 0.16 -0.46 16 22 C -0.10 -1.40 5.13 -19.87 -0.10 -1.50 16 23 C -0.13 -1.89 9.70 22.27 0.22 -1.68 16 24 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 25 C -0.14 -1.87 10.05 22.27 0.22 -1.65 16 26 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 27 C -0.13 -1.88 9.70 22.27 0.22 -1.66 16 28 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.41 12.73 8.54 -92.71 -0.79 11.94 16 33 H 0.21 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.20 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.18 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.18 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.10 0.55 8.09 -2.39 -0.02 0.53 16 40 H 0.10 0.56 8.08 -2.38 -0.02 0.54 16 41 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 43 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 44 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 45 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -93.12 393.20 -0.22 -93.33 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.19 Total: 19.06 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 4.32 Total: -28.40 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -2.02 Total: -82.86 kcal Atomic # 8 Polarization: -101.67 SS G_CDS: -4.52 Total: -106.19 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 61.82 SS G_CDS: -0.22 Total: 61.59 kcal Total: -93.12 -0.22 -93.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194642191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.136 kcal (2) G-P(sol) polarization free energy of solvation -93.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds