Wall clock time and date at job start Tue Mar 31 2020 22:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42903 * 109.46921 * 2 1 4 4 C 1.35900 * 116.99698 * 180.02562 * 3 2 1 5 5 C 1.38743 * 120.05204 * 179.97438 * 4 3 2 6 6 C 1.38144 * 119.94070 * 180.02562 * 5 4 3 7 7 C 1.38265 * 120.05835 * 0.02562 * 6 5 4 8 8 S 1.76196 * 119.94382 * 179.97438 * 7 6 5 9 9 O 1.42100 * 106.39984 * 336.45005 * 8 7 6 10 10 O 1.42105 * 106.39961 * 203.53760 * 8 7 6 11 11 N 1.65593 * 107.22113 * 89.99677 * 8 7 6 12 12 C 1.46502 * 119.99605 * 269.99694 * 11 8 7 13 13 C 1.50700 * 109.47099 * 264.99737 * 12 11 8 14 14 H 1.07992 * 120.00396 * 0.02562 * 13 12 11 15 15 C 1.37886 * 119.99695 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99754 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00194 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46668 * 90.00094 * 17 15 13 19 19 H 1.48496 * 109.47387 * 210.00050 * 17 15 13 20 20 H 1.48500 * 109.47094 * 330.00171 * 17 15 13 21 21 C 1.46499 * 120.00395 * 89.99978 * 11 8 7 22 22 C 1.53000 * 109.46840 * 265.00156 * 21 11 8 23 23 C 1.53003 * 117.49371 * 243.61805 * 22 21 11 24 24 C 1.53001 * 117.49608 * 174.99880 * 22 21 11 25 25 C 1.38269 * 120.10716 * 0.24408 * 7 6 5 26 26 C 1.38137 * 120.05787 * 359.46066 * 25 7 6 27 27 H 1.08998 * 109.46562 * 60.00194 * 1 2 3 28 28 H 1.08999 * 109.46950 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46801 * 299.99830 * 1 2 3 30 30 H 1.08996 * 109.46801 * 240.00169 * 2 1 3 31 31 H 1.08999 * 109.47472 * 119.99783 * 2 1 3 32 32 H 1.08001 * 120.02651 * 359.97438 * 5 4 3 33 33 H 1.08000 * 119.96698 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.47474 * 25.00485 * 12 11 8 35 35 H 1.09003 * 109.46943 * 145.00256 * 12 11 8 36 36 H 0.96994 * 119.99602 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47391 * 144.99826 * 21 11 8 38 38 H 1.09001 * 109.46813 * 24.99883 * 21 11 8 39 39 H 1.08995 * 115.55630 * 29.32490 * 22 21 11 40 40 H 1.08998 * 117.50656 * 0.02562 * 23 22 21 41 41 H 1.09001 * 117.49674 * 145.02590 * 23 22 21 42 42 H 1.09003 * 117.49710 * 214.97494 * 24 22 21 43 43 H 1.08998 * 117.50185 * 359.97438 * 24 22 21 44 44 H 1.08003 * 119.96705 * 179.71159 * 25 7 6 45 45 H 1.08007 * 120.02640 * 180.25150 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 3.8852 2.8069 -0.0011 6 6 5.2550 2.9853 -0.0022 7 6 6.0963 1.8880 -0.0032 8 16 7.8430 2.1189 -0.0053 9 8 8.0763 3.4104 -0.5502 10 8 8.4039 0.9325 -0.5504 11 7 8.3309 2.1832 1.5758 12 6 8.3805 3.4694 2.2753 13 6 9.7770 4.0303 2.1970 14 1 10.5502 3.4837 1.6777 15 6 10.0676 5.2416 2.7883 16 7 11.2862 5.7314 2.7195 17 14 8.7304 6.1869 3.6871 18 1 8.7086 5.7771 5.1142 19 1 9.0060 7.6431 3.5943 20 1 7.4137 5.8918 3.0671 21 6 8.7130 0.9539 2.2751 22 6 7.5096 0.4126 3.0495 23 6 7.6185 0.3559 4.5746 24 6 7.6718 -0.9352 3.7552 25 6 5.5690 0.6098 -0.0083 26 6 4.1999 0.4261 -0.0011 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8935 -0.5138 0.8900 32 1 3.2284 3.6644 -0.0015 33 1 5.6692 3.9827 -0.0031 34 1 7.6830 4.1644 1.8078 35 1 8.1048 3.3257 3.3200 36 1 11.4905 6.5836 3.1351 37 1 9.5254 1.1683 2.9695 38 1 9.0423 0.2103 1.5492 39 1 6.5335 0.6429 2.6226 40 1 8.5472 0.7045 5.0263 41 1 6.7139 0.5489 5.1513 42 1 6.8023 -1.5914 3.7929 43 1 8.6357 -1.4365 3.6675 44 1 6.2282 -0.2457 -0.0138 45 1 3.7886 -0.5726 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264158199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:36 Heat of formation + Delta-G solvation = -78.810686 kcal Electronic energy + Delta-G solvation = -28073.974781 eV Core-core repulsion = 24184.107628 eV Total energy + Delta-G solvation = -3889.867154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28719 -38.93098 -38.65037 -38.28298 -36.87064 -36.41183 -34.39990 -33.06028 -32.11965 -30.80855 -30.26035 -27.11322 -25.21324 -24.06886 -23.90480 -23.11999 -22.80098 -21.62619 -19.99895 -19.52674 -19.07082 -18.65381 -18.08316 -17.58589 -17.15484 -16.99686 -16.18185 -16.08395 -15.80061 -15.46605 -15.02228 -14.88550 -14.65990 -14.53810 -14.39680 -14.22841 -14.16266 -13.70552 -13.38679 -13.32974 -13.24250 -13.14109 -12.99799 -12.80675 -12.74619 -12.43535 -12.30985 -12.23348 -12.00753 -11.92615 -11.88373 -11.78025 -11.67410 -11.19977 -10.75549 -10.74463 -10.21802 -9.81815 -9.63720 -8.26723 -6.31720 -0.59007 -0.18021 0.17829 1.37078 1.41100 1.50478 1.98796 2.05312 2.36913 2.46414 2.86439 2.99105 3.07284 3.29999 3.62649 3.74220 3.80018 4.01636 4.04296 4.07515 4.15471 4.18745 4.24283 4.27617 4.34820 4.42103 4.52699 4.71844 4.79159 4.83945 4.85567 4.89423 4.92313 4.93191 4.97130 5.02514 5.07773 5.11114 5.24592 5.31325 5.35803 5.40456 5.50598 5.52794 5.77220 6.23568 6.32787 6.71020 7.30830 8.90835 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011819 B = 0.003920 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.543638 B = 7141.135778 C = 7608.016785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.037 3.963 3 O -0.321 6.321 4 C 0.182 3.818 5 C -0.177 4.177 6 C 0.005 3.995 7 C -0.714 4.714 8 S 2.690 3.310 9 O -0.990 6.990 10 O -0.988 6.988 11 N -0.980 5.980 12 C 0.237 3.763 13 C -0.539 4.539 14 H 0.030 0.970 15 C 0.010 3.990 16 N -0.948 5.948 17 Si 0.939 3.061 18 H -0.255 1.255 19 H -0.284 1.284 20 H -0.240 1.240 21 C 0.145 3.855 22 C -0.188 4.188 23 C -0.180 4.180 24 C -0.155 4.155 25 C 0.018 3.982 26 C -0.222 4.222 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.036 0.964 35 H 0.052 0.948 36 H 0.267 0.733 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.154 0.846 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.466 -16.071 -0.296 28.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.037 4.037 3 O -0.234 6.234 4 C 0.135 3.865 5 C -0.197 4.197 6 C -0.015 4.015 7 C -0.805 4.805 8 S 2.785 3.215 9 O -0.981 6.981 10 O -0.979 6.979 11 N -0.817 5.817 12 C 0.112 3.888 13 C -0.578 4.578 14 H 0.049 0.951 15 C -0.188 4.188 16 N -0.588 5.588 17 Si 0.761 3.239 18 H -0.179 1.179 19 H -0.209 1.209 20 H -0.163 1.163 21 C 0.020 3.980 22 C -0.207 4.207 23 C -0.217 4.217 24 C -0.193 4.193 25 C -0.002 4.002 26 C -0.241 4.241 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.172 0.828 33 H 0.158 0.842 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.120 0.880 42 H 0.133 0.867 43 H 0.119 0.881 44 H 0.172 0.828 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -22.966 -15.721 -0.969 27.848 hybrid contribution -0.096 0.824 0.463 0.950 sum -23.062 -14.897 -0.506 27.459 Atomic orbital electron populations 1.21823 0.91277 1.04370 1.03257 1.23265 0.97132 0.80145 1.03132 1.86120 1.17945 1.32284 1.87012 1.19337 0.83050 0.94231 0.89868 1.20701 0.94538 0.96410 1.08019 1.20853 0.93101 0.98014 0.89500 1.30585 1.24995 1.01168 1.23748 1.01547 0.74900 0.72307 0.72769 1.93537 1.85506 1.41754 1.77292 1.93460 1.77803 1.49352 1.77243 1.57049 1.80431 1.13550 1.30627 1.19201 0.95303 0.80113 0.94145 1.21674 0.95968 1.05426 1.34714 0.95136 1.25868 0.97945 0.98077 0.96909 1.70068 1.21879 1.20481 1.46420 0.85848 0.80370 0.77811 0.79911 1.17910 1.20929 1.16309 1.20990 0.96241 0.84156 0.96629 1.22799 0.99550 1.02774 0.95625 1.23065 1.03485 1.02326 0.92866 1.23042 1.04330 0.89819 1.02095 1.20912 0.96075 0.94795 0.88396 1.21603 0.93166 0.99734 1.09608 0.91842 0.87944 0.91828 0.90330 0.90224 0.82750 0.84239 0.94597 0.92962 0.92391 0.90599 0.89143 0.87419 0.89407 0.87969 0.86700 0.88079 0.82822 0.81246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 71.98 0.74 -0.39 16 2 C 0.04 0.39 5.46 71.98 0.39 0.79 16 3 O -0.32 -5.86 10.14 -92.42 -0.94 -6.80 16 4 C 0.18 3.91 6.69 22.51 0.15 4.06 16 5 C -0.18 -4.30 9.99 22.37 0.22 -4.08 16 6 C 0.00 0.14 9.51 22.25 0.21 0.35 16 7 C -0.71 -22.22 5.98 22.28 0.13 -22.08 16 8 S 2.69 108.39 5.65 -56.49 -0.32 108.07 16 9 O -0.99 -48.40 16.25 -128.00 -2.08 -50.48 16 10 O -0.99 -40.82 15.82 -128.00 -2.03 -42.84 16 11 N -0.98 -39.86 2.77 -519.84 -1.44 -41.30 16 12 C 0.24 11.05 4.17 85.63 0.36 11.41 16 13 C -0.54 -31.49 9.94 25.60 0.25 -31.24 16 14 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 15 C 0.01 0.57 5.47 84.66 0.46 1.04 16 16 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 17 Si 0.94 43.10 27.47 68.60 1.88 44.99 16 18 H -0.25 -10.83 7.11 99.48 0.71 -10.13 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 21 C 0.15 4.94 5.96 86.38 0.51 5.46 16 22 C -0.19 -4.90 6.01 -10.79 -0.06 -4.96 16 23 C -0.18 -4.22 10.18 30.60 0.31 -3.90 16 24 C -0.16 -3.05 10.25 30.60 0.31 -2.74 16 25 C 0.02 0.43 9.09 22.25 0.20 0.64 16 26 C -0.22 -4.31 9.04 22.36 0.20 -4.10 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.64 7.66 -2.39 -0.02 0.63 16 31 H 0.08 0.64 7.66 -2.39 -0.02 0.62 16 32 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.14 4.25 7.61 -2.91 -0.02 4.23 16 34 H 0.04 1.67 6.67 -2.39 -0.02 1.65 16 35 H 0.05 2.23 7.53 -2.39 -0.02 2.21 16 36 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 37 H 0.08 2.77 7.84 -2.39 -0.02 2.75 16 38 H 0.09 2.94 6.91 -2.39 -0.02 2.92 16 39 H 0.11 2.70 7.71 -2.39 -0.02 2.68 16 40 H 0.09 2.24 8.03 -2.39 -0.02 2.22 16 41 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.15 3.35 7.61 -2.91 -0.02 3.33 16 45 H 0.17 2.00 6.30 -2.91 -0.02 1.98 16 Total: -1.00 -78.34 385.63 0.71 -77.62 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.92 Total: 20.55 kcal Atomic # 6 Polarization: -54.17 SS G_CDS: 4.41 Total: -49.77 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -1.14 Total: -101.34 kcal Atomic # 8 Polarization: -95.08 SS G_CDS: -5.04 Total: -100.12 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.88 Total: 44.99 kcal Atomic # 16 Polarization: 108.39 SS G_CDS: -0.32 Total: 108.07 kcal Total: -78.34 0.71 -77.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264158199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.188 kcal (2) G-P(sol) polarization free energy of solvation -78.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds