Wall clock time and date at job start Tue Mar 31 2020 23:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00211 * 2 1 4 4 C 1.53006 * 109.47157 * 275.00159 * 3 2 1 5 5 H 1.08999 * 109.34050 * 60.31871 * 4 3 2 6 6 O 1.42732 * 109.21788 * 300.72240 * 4 3 2 7 7 C 1.43210 * 113.11836 * 188.06317 * 6 4 3 8 8 C 1.52976 * 108.47891 * 70.70836 * 7 6 4 9 9 C 1.50737 * 109.77040 * 310.84228 * 8 7 6 10 10 C 1.38595 * 118.76955 * 196.83583 * 9 8 7 11 11 C 1.38065 * 120.28164 * 180.13094 * 10 9 8 12 12 C 1.38264 * 119.86381 * 0.05832 * 11 10 9 13 13 C 1.38054 * 119.89143 * 359.88645 * 12 11 10 14 14 C 1.37909 * 121.35306 * 16.85894 * 9 8 7 15 15 S 1.65602 * 119.99925 * 180.02562 * 2 1 3 16 16 O 1.42092 * 104.28125 * 26.07090 * 15 2 1 17 17 O 1.42102 * 104.27724 * 153.93046 * 15 2 1 18 18 C 1.81404 * 104.44747 * 269.99640 * 15 2 1 19 19 C 1.52995 * 109.47117 * 179.97438 * 18 15 2 20 20 C 1.50702 * 109.47146 * 180.02562 * 19 18 15 21 21 H 1.07997 * 119.99916 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00285 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99590 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00305 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46820 * 60.00223 * 24 22 20 26 26 H 1.48500 * 109.47282 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47186 * 300.00254 * 24 22 20 28 28 H 1.09007 * 109.47052 * 89.99926 * 1 2 3 29 29 H 1.08998 * 109.47180 * 209.99565 * 1 2 3 30 30 H 1.08998 * 109.47061 * 330.00416 * 1 2 3 31 31 H 1.09001 * 109.47441 * 155.00103 * 3 2 1 32 32 H 1.09001 * 109.47000 * 34.99613 * 3 2 1 33 33 H 1.08997 * 109.63914 * 311.01405 * 7 6 4 34 34 H 1.09004 * 109.63301 * 190.40178 * 7 6 4 35 35 H 1.09001 * 109.41962 * 70.93447 * 8 7 6 36 36 H 1.08999 * 109.41893 * 190.81172 * 8 7 6 37 37 H 1.08007 * 119.85437 * 0.17570 * 10 9 8 38 38 H 1.08003 * 120.06785 * 180.02562 * 11 10 9 39 39 H 1.07998 * 120.04979 * 179.86563 * 12 11 10 40 40 H 1.07997 * 119.84317 * 180.02562 * 13 12 11 41 41 H 1.08999 * 109.47225 * 300.00330 * 18 15 2 42 42 H 1.09005 * 109.46688 * 60.00182 * 18 15 2 43 43 H 1.08999 * 109.47573 * 300.00400 * 19 18 15 44 44 H 1.09005 * 109.46961 * 60.00633 * 19 18 15 45 45 H 0.96999 * 120.00091 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7733 -1.4371 5 1 1.3544 1.9290 -1.8673 6 8 3.0461 0.7989 -2.2080 7 6 3.3913 1.2611 -3.5187 8 6 4.4910 2.3164 -3.3868 9 6 4.0987 3.3342 -2.3464 10 6 4.7658 4.5486 -2.3165 11 6 4.4337 5.5024 -1.3751 12 6 3.4321 5.2446 -0.4575 13 6 2.7663 4.0355 -0.4873 14 6 3.0972 3.0778 -1.4335 15 16 2.2930 -1.4342 -0.0006 16 8 1.3970 -2.3559 -0.6062 17 8 3.5395 -1.1189 -0.6057 18 6 2.5194 -1.8269 1.7559 19 6 3.2808 -3.1471 1.8892 20 6 3.4684 -3.4737 3.3485 21 1 3.0826 -2.8065 4.1050 22 6 4.1324 -4.6242 3.7177 23 7 4.6026 -5.4364 2.7963 24 14 4.3642 -5.0294 5.5264 25 1 3.0364 -5.1563 6.1793 26 1 5.1045 -6.3101 5.6559 27 1 5.1364 -3.9434 6.1819 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.1858 1.1177 0.4343 32 1 1.6502 2.0043 0.5894 33 1 2.5154 1.7025 -3.9940 34 1 3.7550 0.4261 -4.1176 35 1 5.4221 1.8342 -3.0891 36 1 4.6315 2.8152 -4.3457 37 1 5.5484 4.7500 -3.0331 38 1 4.9555 6.4478 -1.3552 39 1 3.1713 5.9876 0.2816 40 1 1.9838 3.8351 0.2295 41 1 3.0866 -1.0296 2.2362 42 1 1.5451 -1.9196 2.2359 43 1 2.7132 -3.9441 1.4090 44 1 4.2551 -3.0547 1.4092 45 1 5.0695 -6.2461 3.0560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264729203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:34 Heat of formation + Delta-G solvation = -115.654838 kcal Electronic energy + Delta-G solvation = -28017.712264 eV Core-core repulsion = 24126.247428 eV Total energy + Delta-G solvation = -3891.464836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.33030 -38.57614 -38.03426 -37.23467 -36.76796 -35.88788 -33.98381 -33.11522 -32.88456 -30.51930 -28.85973 -27.61378 -26.58253 -24.75759 -24.43850 -23.44841 -22.43833 -20.95955 -19.75958 -19.04496 -18.27539 -18.22712 -17.45961 -17.09736 -16.89931 -16.64897 -16.51513 -16.12310 -15.69852 -15.54490 -15.04937 -14.90456 -14.67670 -14.45861 -14.39438 -13.95096 -13.89271 -13.70882 -13.56781 -13.27550 -13.04850 -13.00149 -12.89665 -12.83685 -12.77871 -12.60665 -12.40295 -12.24595 -12.20458 -12.11337 -11.89485 -11.73189 -11.47049 -11.11514 -10.64561 -10.51868 -10.03997 -9.64520 -9.46048 -8.26065 -6.41027 -0.62261 0.40317 0.47696 1.40001 1.44262 1.52446 1.83038 2.38086 2.76624 2.89112 3.04999 3.06666 3.29660 3.64713 3.73301 3.82432 3.92616 4.00407 4.06144 4.11849 4.18199 4.20914 4.29300 4.30744 4.51802 4.59053 4.64262 4.66258 4.73115 4.76114 4.82930 4.86755 4.98955 5.01044 5.06438 5.12347 5.20086 5.26157 5.26599 5.54047 5.62722 5.64969 5.67456 5.70519 6.05762 6.11510 6.31524 6.72396 7.29152 8.86185 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015738 B = 0.002979 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.716331 B = 9397.635804 C = 9807.036990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.994 5.994 3 C 0.130 3.870 4 C 0.105 3.895 5 H 0.083 0.917 6 O -0.378 6.378 7 C 0.048 3.952 8 C -0.113 4.113 9 C -0.090 4.090 10 C -0.129 4.129 11 C -0.123 4.123 12 C -0.127 4.127 13 C -0.117 4.117 14 C -0.129 4.129 15 S 2.610 3.390 16 O -1.000 7.000 17 O -0.966 6.966 18 C -0.595 4.595 19 C 0.023 3.977 20 C -0.542 4.542 21 H 0.076 0.924 22 C -0.005 4.005 23 N -0.935 5.935 24 Si 0.976 3.024 25 H -0.261 1.261 26 H -0.283 1.283 27 H -0.262 1.262 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.003 0.997 44 H 0.004 0.996 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 25.715 -8.258 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.832 5.832 3 C 0.005 3.995 4 C 0.045 3.955 5 H 0.100 0.900 6 O -0.297 6.297 7 C -0.028 4.028 8 C -0.150 4.150 9 C -0.091 4.091 10 C -0.147 4.147 11 C -0.140 4.140 12 C -0.145 4.145 13 C -0.134 4.134 14 C -0.130 4.130 15 S 2.706 3.294 16 O -0.991 6.991 17 O -0.956 6.956 18 C -0.726 4.726 19 C -0.016 4.016 20 C -0.581 4.581 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.575 5.575 24 Si 0.799 3.201 25 H -0.186 1.186 26 H -0.209 1.209 27 H -0.187 1.187 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.130 0.870 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.021 0.979 44 H 0.022 0.978 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.237 24.908 -9.009 27.212 hybrid contribution 0.391 -0.498 0.916 1.113 sum -5.846 24.410 -8.094 26.373 Atomic orbital electron populations 1.21751 0.76766 1.04760 1.02780 1.57273 1.15892 1.20177 1.89842 1.21693 0.97612 0.85793 0.94422 1.21518 0.94421 0.85652 0.93901 0.89957 1.88381 1.76454 1.38356 1.26515 1.22775 0.97278 0.98007 0.84776 1.21117 0.99560 0.95540 0.98733 1.19762 0.96267 0.95826 0.97205 1.21310 1.00167 0.93010 1.00196 1.21474 0.97717 0.99870 0.94979 1.21456 0.96259 0.97316 0.99436 1.21361 1.00827 0.93312 0.97939 1.20236 0.98439 0.96588 0.97694 1.04941 0.73436 0.73157 0.77870 1.93468 1.65952 1.64271 1.75360 1.93559 1.44927 1.82741 1.74366 1.30463 1.10430 1.07666 1.24060 1.18779 0.94026 0.89862 0.98922 1.21507 1.37023 1.07525 0.92022 0.90590 1.26168 0.94818 0.95951 1.03406 1.70109 1.38273 1.13348 1.35729 0.85337 0.78940 0.77681 0.78135 1.18600 1.20870 1.18680 0.92681 0.91269 0.87008 0.90507 0.84432 0.91706 0.88537 0.90824 0.87652 0.84624 0.83800 0.83412 0.83358 0.84449 0.84388 0.97891 0.97798 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.65 10.24 127.77 1.31 2.96 16 2 N -0.99 -26.51 2.98 -539.11 -1.61 -28.12 16 3 C 0.13 2.92 4.70 86.38 0.41 3.32 16 4 C 0.10 2.50 3.00 29.84 0.09 2.59 16 5 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 6 O -0.38 -11.97 8.04 -128.76 -1.03 -13.01 16 7 C 0.05 1.17 6.85 71.97 0.49 1.66 16 8 C -0.11 -2.36 6.00 29.85 0.18 -2.18 16 9 C -0.09 -1.96 5.78 -19.85 -0.11 -2.08 16 10 C -0.13 -2.28 9.67 22.31 0.22 -2.06 16 11 C -0.12 -1.82 10.05 22.23 0.22 -1.60 16 12 C -0.13 -1.80 10.05 22.23 0.22 -1.58 16 13 C -0.12 -1.89 9.10 22.32 0.20 -1.69 16 14 C -0.13 -2.76 5.46 -19.86 -0.11 -2.87 16 15 S 2.61 101.51 5.25 -56.49 -0.30 101.21 16 16 O -1.00 -45.00 17.09 -127.65 -2.18 -47.18 16 17 O -0.97 -43.35 14.87 -119.49 -1.78 -45.13 16 18 C -0.60 -23.93 6.12 71.98 0.44 -23.49 16 19 C 0.02 1.26 4.98 29.85 0.15 1.41 16 20 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 21 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 22 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 23 N -0.94 -58.28 13.29 21.45 0.28 -58.00 16 24 Si 0.98 43.92 29.54 68.60 2.03 45.95 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 27 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 28 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.07 1.43 7.79 -2.39 -0.02 1.42 16 30 H 0.11 1.22 7.94 -2.39 -0.02 1.20 16 31 H 0.08 1.98 7.61 -2.39 -0.02 1.97 16 32 H 0.14 1.74 6.38 -2.39 -0.02 1.73 16 33 H 0.06 1.31 8.07 -2.39 -0.02 1.29 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.15 1.55 6.54 -2.91 -0.02 1.53 16 41 H 0.14 4.87 8.14 -2.39 -0.02 4.85 16 42 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 45 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -83.24 376.77 0.79 -82.45 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.97 Total: 17.97 kcal Atomic # 6 Polarization: -60.56 SS G_CDS: 4.40 Total: -56.15 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -1.32 Total: -86.12 kcal Atomic # 8 Polarization: -100.32 SS G_CDS: -4.99 Total: -105.31 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 101.51 SS G_CDS: -0.30 Total: 101.21 kcal Total: -83.24 0.79 -82.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264729203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.204 kcal (2) G-P(sol) polarization free energy of solvation -83.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds