Wall clock time and date at job start Tue Mar 31 2020 22:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81396 * 109.47159 * 2 1 4 4 O 1.42100 * 108.57746 * 294.48255 * 3 2 1 5 5 O 1.42096 * 108.58228 * 65.51235 * 3 2 1 6 6 C 1.81403 * 101.91954 * 179.97438 * 3 2 1 7 7 C 1.53001 * 109.46916 * 180.02562 * 6 3 2 8 8 H 1.08999 * 109.47233 * 304.99547 * 7 6 3 9 9 C 1.53008 * 109.46740 * 185.00176 * 7 6 3 10 10 N 1.46498 * 109.47263 * 64.99947 * 7 6 3 11 11 C 1.46500 * 120.00024 * 60.00000 * 10 7 6 12 12 C 1.34779 * 119.99916 * 239.99809 * 10 7 6 13 13 O 1.21544 * 119.99708 * 4.78191 * 12 10 7 14 14 C 1.47884 * 119.99593 * 184.78456 * 12 10 7 15 15 C 1.39912 * 120.02816 * 22.20066 * 14 12 10 16 16 C 1.38332 * 120.35734 * 179.71405 * 15 14 12 17 17 C 1.37753 * 120.41200 * 0.56011 * 16 15 14 18 18 C 1.40752 * 120.03743 * 359.72000 * 17 16 15 19 19 C 1.41440 * 120.17601 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99888 * 335.08950 * 19 18 17 21 21 C 1.39934 * 120.00025 * 155.08637 * 19 18 17 22 22 N 1.30826 * 119.99970 * 342.87745 * 21 19 18 23 23 Si 1.86798 * 119.99917 * 162.87306 * 21 19 18 24 24 H 1.48495 * 109.47329 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47222 * 120.00334 * 23 21 19 26 26 H 1.48506 * 109.47121 * 240.00029 * 23 21 19 27 27 C 1.39003 * 120.01781 * 202.46927 * 14 12 10 28 28 H 1.08994 * 109.47097 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47011 * 300.00157 * 1 2 3 30 30 H 1.08998 * 109.46848 * 59.99656 * 1 2 3 31 31 H 1.08994 * 109.47199 * 239.99610 * 2 1 3 32 32 H 1.09006 * 109.46734 * 120.00022 * 2 1 3 33 33 H 1.09000 * 109.47224 * 299.99808 * 6 3 2 34 34 H 1.08995 * 109.47024 * 59.99981 * 6 3 2 35 35 H 1.08992 * 109.47400 * 59.99843 * 9 7 6 36 36 H 1.08999 * 109.46625 * 179.97438 * 9 7 6 37 37 H 1.08999 * 109.46744 * 299.99671 * 9 7 6 38 38 H 1.09004 * 109.47307 * 84.16826 * 11 10 7 39 39 H 1.08996 * 109.47151 * 204.16636 * 11 10 7 40 40 H 1.08998 * 109.46802 * 324.17292 * 11 10 7 41 41 H 1.08001 * 119.82159 * 359.97438 * 15 14 12 42 42 H 1.08003 * 119.79200 * 180.25728 * 16 15 14 43 43 H 1.08001 * 119.97968 * 179.74161 * 17 16 15 44 44 H 0.96999 * 120.00200 * 180.02562 * 22 21 19 45 45 H 1.07989 * 120.20521 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7594 2.3231 -1.2258 5 8 1.7593 2.3232 1.2257 6 6 3.9330 1.4718 0.0008 7 6 4.6281 2.8348 0.0015 8 1 4.2686 3.4265 -0.8403 9 6 6.1401 2.6362 -0.1236 10 7 4.3294 3.5347 1.2534 11 6 4.7155 2.9398 2.5353 12 6 3.6994 4.7258 1.2257 13 8 3.3018 5.1786 0.1701 14 6 3.4921 5.4819 2.4796 15 6 4.3101 5.2373 3.5881 16 6 4.1260 5.9447 4.7625 17 6 3.1283 6.8897 4.8582 18 6 2.2917 7.1453 3.7555 19 6 1.2668 8.1153 3.8504 20 1 0.8508 8.3688 4.8143 21 6 0.7917 8.7466 2.6955 22 7 1.4932 8.7054 1.5919 23 14 -0.8441 9.6479 2.7293 24 1 -1.4369 9.5470 4.0871 25 1 -0.6290 11.0770 2.3875 26 1 -1.7671 9.0358 1.7400 27 6 2.4807 6.4321 2.5596 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 4.2253 0.9148 0.8910 34 1 4.2260 0.9146 -0.8889 35 1 6.3624 2.1155 -1.0549 36 1 6.6353 3.6072 -0.1235 37 1 6.4997 2.0445 0.7183 38 1 5.7548 3.1867 2.7521 39 1 4.0762 3.3332 3.3256 40 1 4.6028 1.8570 2.4819 41 1 5.0922 4.4952 3.5251 42 1 4.7654 5.7515 5.6112 43 1 2.9881 7.4350 5.7799 44 1 1.1641 9.1433 0.7914 45 1 1.8445 6.6214 1.7078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265090972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:24 Heat of formation + Delta-G solvation = -61.079326 kcal Electronic energy + Delta-G solvation = -28564.208586 eV Core-core repulsion = 24675.110322 eV Total energy + Delta-G solvation = -3889.098264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.79214 -37.19179 -36.83953 -36.07059 -35.82322 -33.83513 -33.34453 -32.46517 -29.71049 -29.34430 -28.08044 -26.90775 -25.15028 -24.31622 -23.05723 -20.91228 -20.53417 -18.91742 -18.75023 -17.60920 -16.99786 -16.52300 -16.12932 -15.86585 -15.61025 -15.05892 -14.89437 -14.76211 -14.42659 -13.78449 -13.60103 -13.43303 -13.06031 -13.00717 -12.83661 -12.71527 -12.67603 -12.39619 -12.25926 -12.10611 -11.89612 -11.86699 -11.83647 -11.75499 -11.54680 -11.18481 -11.06615 -10.83335 -10.74707 -10.57482 -10.32629 -10.18166 -9.93991 -9.51787 -9.14398 -8.87195 -8.40622 -7.51408 -7.38659 -6.69479 -4.31387 -0.07112 2.32406 2.75424 2.88818 3.14378 3.19566 3.22122 3.28062 3.62176 3.85913 3.94580 3.99896 4.34570 4.42955 4.46481 4.70221 4.81567 4.96170 4.97092 5.17192 5.23884 5.38150 5.39376 5.40331 5.55779 5.56642 5.65142 5.72454 5.75372 5.96498 6.02102 6.16471 6.20358 6.40814 6.75407 6.87715 7.08150 7.13111 7.30693 7.48298 7.68996 7.83836 7.96771 8.07631 8.27229 8.59877 8.87945 8.92159 8.95041 10.24926 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.004119 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.555321 B = 6796.339815 C = 7925.895936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.624 4.624 3 S 2.411 3.589 4 O -0.928 6.928 5 O -0.908 6.908 6 C -0.631 4.631 7 C 0.149 3.851 8 H 0.115 0.885 9 C -0.150 4.150 10 N -0.623 5.623 11 C 0.067 3.933 12 C 0.571 3.429 13 O -0.537 6.537 14 C -0.119 4.119 15 C -0.239 4.239 16 C -0.101 4.101 17 C -0.212 4.212 18 C 0.099 3.901 19 C -0.461 4.461 20 H 0.081 0.919 21 C 0.072 3.928 22 N -0.783 5.783 23 Si 0.908 3.092 24 H -0.260 1.260 25 H -0.274 1.274 26 H -0.271 1.271 27 C -0.090 4.090 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.113 0.887 40 H 0.050 0.950 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.284 0.716 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.011 -18.781 -2.809 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.751 4.751 3 S 2.590 3.410 4 O -0.925 6.925 5 O -0.905 6.905 6 C -0.760 4.760 7 C 0.044 3.956 8 H 0.132 0.868 9 C -0.209 4.209 10 N -0.359 5.359 11 C -0.075 4.075 12 C 0.364 3.636 13 O -0.414 6.414 14 C -0.123 4.123 15 C -0.258 4.258 16 C -0.119 4.119 17 C -0.232 4.232 18 C 0.097 3.903 19 C -0.490 4.490 20 H 0.099 0.901 21 C -0.147 4.147 22 N -0.407 5.407 23 Si 0.733 3.267 24 H -0.184 1.184 25 H -0.200 1.200 26 H -0.196 1.196 27 C -0.110 4.110 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.131 0.869 40 H 0.068 0.932 41 H 0.133 0.867 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.095 0.905 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.297 -17.661 -3.627 18.535 hybrid contribution -0.006 -0.610 -0.044 0.612 sum 4.291 -18.271 -3.671 19.124 Atomic orbital electron populations 1.21501 0.90360 1.04539 1.04084 1.30350 1.07775 1.26143 1.10878 1.08538 0.78288 0.77835 0.76333 1.93604 1.80721 1.72374 1.45776 1.93659 1.80330 1.71689 1.44862 1.30812 1.26315 1.07381 1.11494 1.20541 0.96162 0.88839 0.90071 0.86757 1.22056 0.93814 1.02896 1.02150 1.47880 1.60877 1.21202 1.05904 1.22526 1.00755 0.97292 0.86901 1.19039 0.75028 0.79370 0.90137 1.90735 1.49620 1.68546 1.32524 1.19318 1.01001 0.99917 0.92030 1.21181 1.04619 1.06038 0.93969 1.20455 0.98071 0.97059 0.96298 1.21096 0.99111 1.03357 0.99666 1.17583 0.91083 0.90915 0.90730 1.19603 1.16644 1.18495 0.94230 0.90112 1.25965 0.98126 0.95726 0.94856 1.69803 1.35418 1.33556 1.01911 0.86261 0.81871 0.78987 0.79624 1.18371 1.19960 1.19578 1.21612 0.97039 0.92872 0.99497 0.90315 0.90558 0.90851 0.85515 0.85292 0.84729 0.84375 0.91462 0.91323 0.91970 0.92680 0.86869 0.93162 0.86661 0.89001 0.88778 0.90501 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.92 37.16 0.37 -0.98 16 2 C -0.62 -5.14 6.53 37.16 0.24 -4.90 16 3 S 2.41 32.87 4.64 -107.50 -0.50 32.37 16 4 O -0.93 -16.50 18.10 -57.83 -1.05 -17.55 16 5 O -0.91 -16.46 16.73 -57.83 -0.97 -17.43 16 6 C -0.63 -6.23 5.21 37.16 0.19 -6.04 16 7 C 0.15 2.09 2.64 -67.93 -0.18 1.91 16 8 H 0.11 1.90 6.91 -51.93 -0.36 1.54 16 9 C -0.15 -1.57 9.19 37.16 0.34 -1.23 16 10 N -0.62 -10.83 1.80 -175.03 -0.31 -11.14 16 11 C 0.07 0.94 7.76 59.85 0.46 1.40 16 12 C 0.57 13.31 7.00 -12.31 -0.09 13.23 16 13 O -0.54 -14.30 15.89 5.33 0.08 -14.22 16 14 C -0.12 -2.98 5.56 -105.04 -0.58 -3.56 16 15 C -0.24 -5.13 7.56 -38.92 -0.29 -5.43 16 16 C -0.10 -2.18 10.01 -39.72 -0.40 -2.58 16 17 C -0.21 -5.19 9.78 -38.81 -0.38 -5.57 16 18 C 0.10 2.73 5.57 -106.87 -0.60 2.14 16 19 C -0.46 -12.56 9.05 -37.73 -0.34 -12.90 16 20 H 0.08 2.09 7.90 -52.49 -0.41 1.67 16 21 C 0.07 1.90 5.15 -17.35 -0.09 1.82 16 22 N -0.78 -21.73 10.94 55.55 0.61 -21.12 16 23 Si 0.91 19.56 29.59 -169.99 -5.03 14.53 16 24 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 C -0.09 -2.54 8.23 -38.44 -0.32 -2.85 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.13 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.13 0.93 6.49 -51.92 -0.34 0.59 16 34 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 38 H 0.05 0.66 7.20 -51.93 -0.37 0.29 16 39 H 0.11 1.84 4.93 -51.93 -0.26 1.58 16 40 H 0.05 0.52 6.36 -51.93 -0.33 0.19 16 41 H 0.12 2.03 4.16 -52.49 -0.22 1.81 16 42 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 44 H 0.28 7.24 8.30 -40.82 -0.34 6.91 16 45 H 0.13 4.02 5.91 -52.49 -0.31 3.71 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -37.16 375.23 -9.52 -46.68 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.36 Total: 7.76 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -1.65 Total: -25.54 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.29 Total: -32.26 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -1.93 Total: -49.19 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Atomic # 16 Polarization: 32.87 SS G_CDS: -0.50 Total: 32.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.16 -9.52 -46.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265090972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.395 kcal (2) G-P(sol) polarization free energy of solvation -37.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds