Wall clock time and date at job start Tue Mar 31 2020 22:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81396 * 109.47159 * 2 1 4 4 O 1.42100 * 108.57746 * 294.48255 * 3 2 1 5 5 O 1.42096 * 108.58228 * 65.51235 * 3 2 1 6 6 C 1.81403 * 101.91954 * 179.97438 * 3 2 1 7 7 C 1.53001 * 109.46916 * 180.02562 * 6 3 2 8 8 H 1.08999 * 109.47233 * 304.99547 * 7 6 3 9 9 C 1.53008 * 109.46740 * 185.00176 * 7 6 3 10 10 N 1.46498 * 109.47263 * 64.99947 * 7 6 3 11 11 C 1.46500 * 120.00024 * 60.00000 * 10 7 6 12 12 C 1.34779 * 119.99916 * 239.99809 * 10 7 6 13 13 O 1.21544 * 119.99708 * 4.78191 * 12 10 7 14 14 C 1.47884 * 119.99593 * 184.78456 * 12 10 7 15 15 C 1.39912 * 120.02816 * 22.20066 * 14 12 10 16 16 C 1.38332 * 120.35734 * 179.71405 * 15 14 12 17 17 C 1.37753 * 120.41200 * 0.56011 * 16 15 14 18 18 C 1.40752 * 120.03743 * 359.72000 * 17 16 15 19 19 C 1.41440 * 120.17601 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99888 * 335.08950 * 19 18 17 21 21 C 1.39934 * 120.00025 * 155.08637 * 19 18 17 22 22 N 1.30826 * 119.99970 * 342.87745 * 21 19 18 23 23 Si 1.86798 * 119.99917 * 162.87306 * 21 19 18 24 24 H 1.48495 * 109.47329 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47222 * 120.00334 * 23 21 19 26 26 H 1.48506 * 109.47121 * 240.00029 * 23 21 19 27 27 C 1.39003 * 120.01781 * 202.46927 * 14 12 10 28 28 H 1.08994 * 109.47097 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47011 * 300.00157 * 1 2 3 30 30 H 1.08998 * 109.46848 * 59.99656 * 1 2 3 31 31 H 1.08994 * 109.47199 * 239.99610 * 2 1 3 32 32 H 1.09006 * 109.46734 * 120.00022 * 2 1 3 33 33 H 1.09000 * 109.47224 * 299.99808 * 6 3 2 34 34 H 1.08995 * 109.47024 * 59.99981 * 6 3 2 35 35 H 1.08992 * 109.47400 * 59.99843 * 9 7 6 36 36 H 1.08999 * 109.46625 * 179.97438 * 9 7 6 37 37 H 1.08999 * 109.46744 * 299.99671 * 9 7 6 38 38 H 1.09004 * 109.47307 * 84.16826 * 11 10 7 39 39 H 1.08996 * 109.47151 * 204.16636 * 11 10 7 40 40 H 1.08998 * 109.46802 * 324.17292 * 11 10 7 41 41 H 1.08001 * 119.82159 * 359.97438 * 15 14 12 42 42 H 1.08003 * 119.79200 * 180.25728 * 16 15 14 43 43 H 1.08001 * 119.97968 * 179.74161 * 17 16 15 44 44 H 0.96999 * 120.00200 * 180.02562 * 22 21 19 45 45 H 1.07989 * 120.20521 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7594 2.3231 -1.2258 5 8 1.7593 2.3232 1.2257 6 6 3.9330 1.4718 0.0008 7 6 4.6281 2.8348 0.0015 8 1 4.2686 3.4265 -0.8403 9 6 6.1401 2.6362 -0.1236 10 7 4.3294 3.5347 1.2534 11 6 4.7155 2.9398 2.5353 12 6 3.6994 4.7258 1.2257 13 8 3.3018 5.1786 0.1701 14 6 3.4921 5.4819 2.4796 15 6 4.3101 5.2373 3.5881 16 6 4.1260 5.9447 4.7625 17 6 3.1283 6.8897 4.8582 18 6 2.2917 7.1453 3.7555 19 6 1.2668 8.1153 3.8504 20 1 0.8508 8.3688 4.8143 21 6 0.7917 8.7466 2.6955 22 7 1.4932 8.7054 1.5919 23 14 -0.8441 9.6479 2.7293 24 1 -1.4369 9.5470 4.0871 25 1 -0.6290 11.0770 2.3875 26 1 -1.7671 9.0358 1.7400 27 6 2.4807 6.4321 2.5596 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 4.2253 0.9148 0.8910 34 1 4.2260 0.9146 -0.8889 35 1 6.3624 2.1155 -1.0549 36 1 6.6353 3.6072 -0.1235 37 1 6.4997 2.0445 0.7183 38 1 5.7548 3.1867 2.7521 39 1 4.0762 3.3332 3.3256 40 1 4.6028 1.8570 2.4819 41 1 5.0922 4.4952 3.5251 42 1 4.7654 5.7515 5.6112 43 1 2.9881 7.4350 5.7799 44 1 1.1641 9.1433 0.7914 45 1 1.8445 6.6214 1.7078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265090972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:23 Heat of formation + Delta-G solvation = -89.209890 kcal Electronic energy + Delta-G solvation = -28565.428419 eV Core-core repulsion = 24675.110322 eV Total energy + Delta-G solvation = -3890.318097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37654 -38.97605 -37.98612 -37.59790 -36.95135 -35.70592 -34.05752 -33.87347 -31.50404 -31.22326 -28.91371 -28.24345 -27.05644 -25.22143 -24.51257 -22.80405 -21.95719 -20.42868 -19.79415 -19.39983 -18.05347 -17.87879 -17.49394 -17.18938 -17.02082 -16.60723 -16.47250 -16.24811 -15.43159 -15.18769 -15.08389 -14.63262 -14.45589 -14.22599 -14.19171 -14.08113 -13.82076 -13.53749 -13.46038 -13.41891 -13.25222 -13.05808 -12.98573 -12.98032 -12.84599 -12.58015 -12.46786 -12.44000 -12.15440 -11.94701 -11.84866 -11.70177 -11.35640 -11.13106 -11.08772 -10.63492 -9.80535 -9.41576 -9.31998 -8.65310 -6.37753 -1.00590 0.43613 1.01020 1.32163 1.45038 1.49748 1.84925 1.93676 2.08484 2.17545 2.72233 2.78066 3.06044 3.44191 3.69563 3.71694 3.77452 3.85092 4.00025 4.10267 4.19947 4.35526 4.37387 4.47616 4.54968 4.66286 4.67744 4.72260 4.76445 4.80589 4.89314 4.95642 5.04315 5.07233 5.09023 5.22583 5.25904 5.32130 5.52001 5.61970 5.85254 5.96253 6.06330 6.27241 6.34656 6.63088 6.87924 6.97017 7.22033 8.31202 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.004119 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.555321 B = 6796.339815 C = 7925.895936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.584 4.584 3 S 2.361 3.639 4 O -0.998 6.998 5 O -0.977 6.977 6 C -0.604 4.604 7 C 0.130 3.870 8 H 0.072 0.928 9 C -0.142 4.142 10 N -0.609 5.609 11 C 0.049 3.951 12 C 0.560 3.440 13 O -0.594 6.594 14 C -0.136 4.136 15 C -0.211 4.211 16 C -0.098 4.098 17 C -0.216 4.216 18 C 0.066 3.934 19 C -0.500 4.500 20 H 0.086 0.914 21 C 0.024 3.976 22 N -0.831 5.831 23 Si 0.983 3.017 24 H -0.247 1.247 25 H -0.261 1.261 26 H -0.274 1.274 27 C -0.137 4.137 28 H 0.114 0.886 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.182 0.818 34 H 0.190 0.810 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.167 0.833 42 H 0.145 0.855 43 H 0.109 0.891 44 H 0.284 0.716 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.058 -23.672 -1.107 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.716 4.716 3 S 2.551 3.449 4 O -0.995 6.995 5 O -0.974 6.974 6 C -0.735 4.735 7 C 0.026 3.974 8 H 0.090 0.910 9 C -0.201 4.201 10 N -0.342 5.342 11 C -0.091 4.091 12 C 0.352 3.648 13 O -0.475 6.475 14 C -0.139 4.139 15 C -0.230 4.230 16 C -0.116 4.116 17 C -0.236 4.236 18 C 0.064 3.936 19 C -0.529 4.529 20 H 0.104 0.896 21 C -0.190 4.190 22 N -0.457 5.457 23 Si 0.803 3.197 24 H -0.170 1.170 25 H -0.185 1.185 26 H -0.199 1.199 27 C -0.158 4.158 28 H 0.132 0.868 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.186 0.814 32 H 0.189 0.811 33 H 0.199 0.801 34 H 0.208 0.792 35 H 0.116 0.884 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.184 0.816 42 H 0.162 0.838 43 H 0.127 0.873 44 H 0.094 0.906 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.366 -22.550 -1.887 23.797 hybrid contribution -0.759 0.579 -0.539 1.096 sum 6.608 -21.971 -2.426 23.071 Atomic orbital electron populations 1.21698 0.91554 1.06257 1.02792 1.30015 1.06590 1.20006 1.14991 1.09280 0.80754 0.80692 0.74154 1.93524 1.82660 1.75968 1.47334 1.93588 1.82280 1.75274 1.46229 1.30590 1.20925 1.05640 1.16377 1.20907 0.99395 0.90009 0.87050 0.91013 1.22059 0.89919 1.02877 1.05242 1.47856 1.58505 1.19146 1.08727 1.22816 1.01778 1.00208 0.84347 1.18964 0.75704 0.81357 0.88738 1.90696 1.52230 1.70566 1.34039 1.19740 1.00542 0.99406 0.94242 1.21832 1.03686 1.05256 0.92244 1.21014 0.97351 0.95299 0.97904 1.21437 0.99113 1.03934 0.99070 1.17936 0.92474 0.91553 0.91687 1.19895 1.18329 1.19790 0.94925 0.89640 1.26930 1.01619 0.96360 0.94067 1.69936 1.37545 1.35443 1.02738 0.85157 0.76680 0.77940 0.79920 1.16961 1.18534 1.19936 1.21390 0.99175 0.96121 0.99066 0.86763 0.92197 0.92304 0.81357 0.81139 0.80053 0.79226 0.88394 0.93326 0.88660 0.89249 0.89379 0.88078 0.81616 0.83770 0.87253 0.90574 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.92 71.98 0.71 -2.06 16 2 C -0.58 -7.23 6.53 71.98 0.47 -6.76 16 3 S 2.36 63.82 4.64 -56.49 -0.26 63.56 16 4 O -1.00 -38.43 18.10 -127.37 -2.31 -40.74 16 5 O -0.98 -37.24 16.73 -127.37 -2.13 -39.37 16 6 C -0.60 -9.21 5.21 71.98 0.38 -8.84 16 7 C 0.13 3.41 2.64 44.99 0.12 3.53 16 8 H 0.07 2.52 6.91 -2.39 -0.02 2.50 16 9 C -0.14 -2.33 9.19 71.98 0.66 -1.67 16 10 N -0.61 -20.48 1.80 -825.95 -1.48 -21.97 16 11 C 0.05 1.14 7.76 127.77 0.99 2.13 16 12 C 0.56 27.59 7.00 86.80 0.61 28.20 16 13 O -0.59 -34.97 15.89 -3.85 -0.06 -35.03 16 14 C -0.14 -7.11 5.56 -20.13 -0.11 -7.23 16 15 C -0.21 -8.76 7.56 22.70 0.17 -8.59 16 16 C -0.10 -4.02 10.01 22.18 0.22 -3.80 16 17 C -0.22 -10.64 9.78 22.77 0.22 -10.42 16 18 C 0.07 3.85 5.57 -21.32 -0.12 3.73 16 19 C -0.50 -29.24 9.05 23.47 0.21 -29.03 16 20 H 0.09 4.68 7.90 -2.91 -0.02 4.65 16 21 C 0.02 1.37 5.15 85.25 0.44 1.81 16 22 N -0.83 -50.81 10.94 21.82 0.24 -50.57 16 23 Si 0.98 42.97 29.59 68.60 2.03 45.00 16 24 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C -0.14 -8.41 8.23 23.01 0.19 -8.22 16 28 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.17 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.17 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.18 1.08 6.49 -2.39 -0.02 1.06 16 34 H 0.19 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 0.96 7.67 -2.39 -0.02 0.95 16 38 H 0.09 1.55 7.20 -2.38 -0.02 1.53 16 39 H 0.09 2.57 4.93 -2.39 -0.01 2.56 16 40 H 0.10 1.38 6.36 -2.39 -0.02 1.36 16 41 H 0.17 5.10 4.16 -2.91 -0.01 5.08 16 42 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 44 H 0.28 16.07 8.30 -92.71 -0.77 15.30 16 45 H 0.09 6.01 5.91 -2.92 -0.02 5.99 16 Total: -1.00 -100.82 375.23 2.19 -98.63 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 1.00 Total: 27.69 kcal Atomic # 6 Polarization: -52.37 SS G_CDS: 5.16 Total: -47.20 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.25 Total: -72.54 kcal Atomic # 8 Polarization: -110.64 SS G_CDS: -4.50 Total: -115.14 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 63.82 SS G_CDS: -0.26 Total: 63.56 kcal Total: -100.82 2.19 -98.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265090972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.418 kcal (2) G-P(sol) polarization free energy of solvation -100.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds