Wall clock time and date at job start Tue Mar 31 2020 22:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81402 * 109.47476 * 2 1 4 4 O 1.42103 * 108.57626 * 65.51135 * 3 2 1 5 5 O 1.42097 * 108.57576 * 294.48838 * 3 2 1 6 6 C 1.81394 * 101.92294 * 179.97438 * 3 2 1 7 7 C 1.52994 * 109.47423 * 180.02562 * 6 3 2 8 8 H 1.09004 * 109.47371 * 59.99591 * 7 6 3 9 9 C 1.52994 * 109.47462 * 179.97438 * 7 6 3 10 10 N 1.46504 * 109.47091 * 300.00372 * 7 6 3 11 11 C 1.46503 * 119.99582 * 299.99829 * 10 7 6 12 12 C 1.34770 * 120.00144 * 119.99634 * 10 7 6 13 13 O 1.21582 * 120.00412 * 355.11527 * 12 10 7 14 14 C 1.47646 * 119.99825 * 175.11250 * 12 10 7 15 15 C 1.40013 * 119.89717 * 221.79384 * 14 12 10 16 16 C 1.36317 * 120.10723 * 179.76400 * 15 14 12 17 17 C 1.40881 * 119.89077 * 0.51156 * 16 15 14 18 18 C 1.41107 * 120.10633 * 179.72121 * 17 16 15 19 19 H 1.07996 * 120.00483 * 161.91351 * 18 17 16 20 20 C 1.40240 * 119.99586 * 341.91188 * 18 17 16 21 21 N 1.30639 * 119.99849 * 333.13169 * 20 18 17 22 22 Si 1.86798 * 119.99701 * 153.13254 * 20 18 17 23 23 H 1.48498 * 109.47418 * 94.99374 * 22 20 18 24 24 H 1.48505 * 109.46838 * 214.99515 * 22 20 18 25 25 H 1.48498 * 109.47420 * 334.99259 * 22 20 18 26 26 C 1.40892 * 119.79680 * 359.74510 * 17 16 15 27 27 C 1.36323 * 119.88796 * 359.97438 * 26 17 16 28 28 H 1.09006 * 109.46916 * 300.00535 * 1 2 3 29 29 H 1.09001 * 109.47019 * 59.99891 * 1 2 3 30 30 H 1.08991 * 109.47150 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46975 * 239.99771 * 2 1 3 32 32 H 1.09001 * 109.47019 * 120.00109 * 2 1 3 33 33 H 1.09007 * 109.46947 * 59.99952 * 6 3 2 34 34 H 1.09005 * 109.47129 * 300.00459 * 6 3 2 35 35 H 1.08996 * 109.47360 * 299.99953 * 9 7 6 36 36 H 1.09001 * 109.47434 * 179.97438 * 9 7 6 37 37 H 1.09001 * 109.47229 * 60.00249 * 9 7 6 38 38 H 1.08993 * 109.47383 * 95.61847 * 11 10 7 39 39 H 1.09004 * 109.46968 * 215.61429 * 11 10 7 40 40 H 1.09000 * 109.47138 * 335.61383 * 11 10 7 41 41 H 1.08000 * 119.94389 * 0.02562 * 15 14 12 42 42 H 1.08003 * 120.05078 * 180.23290 * 16 15 14 43 43 H 0.97002 * 119.99807 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.05982 * 179.97438 * 26 17 16 45 45 H 1.07998 * 119.94455 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7593 2.3232 1.2258 5 8 1.7593 2.3231 -1.2258 6 6 3.9330 1.4718 0.0008 7 6 4.6282 2.8347 0.0015 8 1 4.3351 3.3917 0.8915 9 6 6.1449 2.6337 0.0028 10 7 4.2354 3.5839 -1.1946 11 6 4.5211 3.0416 -2.5252 12 6 3.6113 4.7720 -1.0709 13 8 3.2946 5.1807 0.0295 14 6 3.3121 5.5773 -2.2717 15 6 3.5090 6.9633 -2.2494 16 6 3.2388 7.7103 -3.3571 17 6 2.7503 7.0869 -4.5223 18 6 2.4634 7.8565 -5.6696 19 1 2.3742 7.3770 -6.6332 20 6 2.2941 9.2443 -5.5587 21 7 1.8812 9.7640 -4.4334 22 14 2.6588 10.3494 -7.0198 23 1 1.4029 10.6127 -7.7671 24 1 3.2273 11.6343 -6.5389 25 1 3.6363 9.6799 -7.9150 26 6 2.5485 5.6926 -4.5382 27 6 2.8271 4.9531 -3.4274 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 4.2260 0.9145 -0.8890 34 1 4.2253 0.9148 0.8910 35 1 6.4368 2.0765 0.8930 36 1 6.6402 3.6046 0.0029 37 1 6.4384 2.0766 -0.8870 38 1 3.6441 2.5124 -2.8979 39 1 4.7691 3.8573 -3.2045 40 1 5.3627 2.3517 -2.4634 41 1 3.8797 7.4408 -1.3544 42 1 3.3946 8.7789 -3.3401 43 1 1.7645 10.7239 -4.3566 44 1 2.1738 5.2104 -5.4290 45 1 2.6724 3.8843 -3.4385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270411595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:27 Heat of formation + Delta-G solvation = -81.075465 kcal Electronic energy + Delta-G solvation = -28216.034287 eV Core-core repulsion = 24326.068926 eV Total energy + Delta-G solvation = -3889.965362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.63095 -37.25305 -36.85647 -36.01148 -35.81370 -33.92657 -33.36143 -32.32702 -29.90948 -29.28898 -28.06222 -26.61247 -25.84629 -24.26555 -22.46552 -21.02825 -20.45566 -18.91910 -18.68991 -17.49807 -17.06914 -16.75641 -16.26182 -16.01666 -15.61513 -15.27220 -14.92177 -14.49321 -14.16138 -13.75610 -13.54951 -13.46218 -13.20452 -13.15277 -12.73391 -12.70931 -12.51151 -12.34208 -12.21780 -12.04220 -11.89021 -11.86263 -11.83225 -11.76423 -11.65454 -11.17874 -11.14327 -11.10846 -10.87133 -10.75457 -10.54398 -10.32916 -10.01189 -9.44173 -9.11815 -8.87318 -8.33533 -7.56736 -7.45640 -6.99788 -4.45636 -0.08186 2.45388 2.74809 2.95420 3.00007 3.07369 3.16925 3.36238 3.61370 3.76976 3.80548 3.93311 4.34151 4.42076 4.45223 4.53035 4.80763 4.94463 5.01608 5.22837 5.24362 5.34290 5.37489 5.37665 5.61040 5.65669 5.68163 5.70358 5.87913 5.99987 6.09529 6.20246 6.38669 6.42867 6.87204 6.89671 6.97855 7.20399 7.26209 7.56346 7.73234 7.87262 7.97916 8.12850 8.18874 8.52880 8.75187 8.89338 9.00319 9.92428 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.003023 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.414733 B = 9259.595307 C = 9774.122151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.625 4.625 3 S 2.414 3.586 4 O -0.928 6.928 5 O -0.910 6.910 6 C -0.629 4.629 7 C 0.150 3.850 8 H 0.114 0.886 9 C -0.151 4.151 10 N -0.627 5.627 11 C 0.074 3.926 12 C 0.582 3.418 13 O -0.560 6.560 14 C -0.282 4.282 15 C -0.040 4.040 16 C -0.192 4.192 17 C 0.126 3.874 18 C -0.447 4.447 19 H 0.084 0.916 20 C 0.079 3.921 21 N -0.758 5.758 22 Si 0.906 3.094 23 H -0.268 1.268 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.244 4.244 27 C -0.043 4.043 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.287 0.713 44 H 0.095 0.905 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.134 -18.161 4.896 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.752 4.752 3 S 2.593 3.407 4 O -0.925 6.925 5 O -0.907 6.907 6 C -0.758 4.758 7 C 0.044 3.956 8 H 0.132 0.868 9 C -0.210 4.210 10 N -0.363 5.363 11 C -0.069 4.069 12 C 0.378 3.622 13 O -0.439 6.439 14 C -0.286 4.286 15 C -0.060 4.060 16 C -0.212 4.212 17 C 0.123 3.877 18 C -0.474 4.474 19 H 0.102 0.898 20 C -0.144 4.144 21 N -0.380 5.380 22 Si 0.729 3.271 23 H -0.193 1.193 24 H -0.197 1.197 25 H -0.180 1.180 26 C -0.263 4.263 27 C -0.062 4.062 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.380 -16.945 5.597 18.375 hybrid contribution 0.587 -0.486 -0.607 0.975 sum 4.968 -17.431 4.990 18.799 Atomic orbital electron populations 1.21496 0.90382 1.04526 1.04039 1.30359 1.07749 1.26244 1.10861 1.08445 0.78251 0.77710 0.76294 1.93604 1.80768 1.72336 1.45759 1.93633 1.80410 1.71726 1.44951 1.30815 1.26275 1.07362 1.11346 1.20513 0.95233 0.88058 0.91758 0.86831 1.22070 0.93863 1.02862 1.02211 1.47982 1.61092 1.21402 1.05790 1.22075 1.00173 1.00214 0.84400 1.18866 0.74564 0.78969 0.89813 1.90689 1.53668 1.70886 1.28683 1.18699 1.22184 0.93529 0.94181 1.20335 0.96986 0.91726 0.96906 1.20911 1.06761 0.99596 0.93895 1.17716 0.86299 0.91392 0.92298 1.19787 1.40412 0.91510 0.95667 0.89776 1.26123 0.91646 0.99394 0.97231 1.69819 1.26688 1.14640 1.26848 0.86329 0.79955 0.79160 0.81610 1.19293 1.19738 1.18014 1.20585 1.12930 0.94592 0.98205 1.20670 0.95472 0.98111 0.91954 0.90892 0.90567 0.90345 0.85314 0.85562 0.84908 0.84539 0.91540 0.91352 0.91936 0.91779 0.89388 0.92359 0.89033 0.86455 0.90185 0.88703 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.92 37.16 0.37 -0.92 16 2 C -0.62 -4.89 6.53 37.16 0.24 -4.65 16 3 S 2.41 31.42 4.60 -107.50 -0.49 30.93 16 4 O -0.93 -16.09 18.10 -57.83 -1.05 -17.14 16 5 O -0.91 -15.49 15.67 -57.83 -0.91 -16.40 16 6 C -0.63 -5.95 5.18 37.15 0.19 -5.76 16 7 C 0.15 2.03 2.68 -67.93 -0.18 1.85 16 8 H 0.11 1.82 6.91 -51.93 -0.36 1.46 16 9 C -0.15 -1.54 9.18 37.15 0.34 -1.20 16 10 N -0.63 -10.68 1.58 -175.12 -0.28 -10.96 16 11 C 0.07 1.05 7.79 59.85 0.47 1.51 16 12 C 0.58 13.12 6.79 -12.42 -0.08 13.04 16 13 O -0.56 -14.28 16.28 5.29 0.09 -14.19 16 14 C -0.28 -6.82 5.16 -104.73 -0.54 -7.36 16 15 C -0.04 -1.02 9.58 -39.61 -0.38 -1.40 16 16 C -0.19 -5.08 8.72 -39.27 -0.34 -5.43 16 17 C 0.13 3.32 5.62 -106.80 -0.60 2.72 16 18 C -0.45 -11.44 9.01 -37.74 -0.34 -11.78 16 19 H 0.08 2.04 7.98 -52.49 -0.42 1.62 16 20 C 0.08 1.91 4.98 -17.31 -0.09 1.83 16 21 N -0.76 -19.07 11.10 55.56 0.62 -18.45 16 22 Si 0.91 17.67 29.64 -169.99 -5.04 12.63 16 23 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 26 C -0.24 -5.92 9.73 -39.27 -0.38 -6.31 16 27 C -0.04 -1.00 7.55 -39.61 -0.30 -1.30 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.13 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.13 0.86 7.67 -51.92 -0.40 0.46 16 34 H 0.14 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.54 6.67 -51.93 -0.35 0.19 16 38 H 0.06 0.88 6.07 -51.93 -0.32 0.56 16 39 H 0.09 1.39 6.02 -51.93 -0.31 1.08 16 40 H 0.06 0.59 6.44 -51.93 -0.33 0.26 16 41 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.12 3.15 6.02 -52.48 -0.32 2.83 16 43 H 0.29 6.47 8.29 -40.82 -0.34 6.13 16 44 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 45 H 0.11 2.18 5.53 -52.49 -0.29 1.89 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -35.74 375.56 -9.48 -45.22 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.45 Total: 7.85 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -1.63 Total: -25.15 kcal Atomic # 7 Polarization: -29.75 SS G_CDS: 0.34 Total: -29.41 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -1.87 Total: -47.73 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.04 Total: 12.63 kcal Atomic # 16 Polarization: 31.42 SS G_CDS: -0.49 Total: 30.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.74 -9.48 -45.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270411595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.860 kcal (2) G-P(sol) polarization free energy of solvation -35.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds