Wall clock time and date at job start Tue Mar 31 2020 22:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81402 * 109.47476 * 2 1 4 4 O 1.42103 * 108.57626 * 65.51135 * 3 2 1 5 5 O 1.42097 * 108.57576 * 294.48838 * 3 2 1 6 6 C 1.81394 * 101.92294 * 179.97438 * 3 2 1 7 7 C 1.52994 * 109.47423 * 180.02562 * 6 3 2 8 8 H 1.09004 * 109.47371 * 59.99591 * 7 6 3 9 9 C 1.52994 * 109.47462 * 179.97438 * 7 6 3 10 10 N 1.46504 * 109.47091 * 300.00372 * 7 6 3 11 11 C 1.46503 * 119.99582 * 299.99829 * 10 7 6 12 12 C 1.34770 * 120.00144 * 119.99634 * 10 7 6 13 13 O 1.21582 * 120.00412 * 355.11527 * 12 10 7 14 14 C 1.47646 * 119.99825 * 175.11250 * 12 10 7 15 15 C 1.40013 * 119.89717 * 221.79384 * 14 12 10 16 16 C 1.36317 * 120.10723 * 179.76400 * 15 14 12 17 17 C 1.40881 * 119.89077 * 0.51156 * 16 15 14 18 18 C 1.41107 * 120.10633 * 179.72121 * 17 16 15 19 19 H 1.07996 * 120.00483 * 161.91351 * 18 17 16 20 20 C 1.40240 * 119.99586 * 341.91188 * 18 17 16 21 21 N 1.30639 * 119.99849 * 333.13169 * 20 18 17 22 22 Si 1.86798 * 119.99701 * 153.13254 * 20 18 17 23 23 H 1.48498 * 109.47418 * 94.99374 * 22 20 18 24 24 H 1.48505 * 109.46838 * 214.99515 * 22 20 18 25 25 H 1.48498 * 109.47420 * 334.99259 * 22 20 18 26 26 C 1.40892 * 119.79680 * 359.74510 * 17 16 15 27 27 C 1.36323 * 119.88796 * 359.97438 * 26 17 16 28 28 H 1.09006 * 109.46916 * 300.00535 * 1 2 3 29 29 H 1.09001 * 109.47019 * 59.99891 * 1 2 3 30 30 H 1.08991 * 109.47150 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46975 * 239.99771 * 2 1 3 32 32 H 1.09001 * 109.47019 * 120.00109 * 2 1 3 33 33 H 1.09007 * 109.46947 * 59.99952 * 6 3 2 34 34 H 1.09005 * 109.47129 * 300.00459 * 6 3 2 35 35 H 1.08996 * 109.47360 * 299.99953 * 9 7 6 36 36 H 1.09001 * 109.47434 * 179.97438 * 9 7 6 37 37 H 1.09001 * 109.47229 * 60.00249 * 9 7 6 38 38 H 1.08993 * 109.47383 * 95.61847 * 11 10 7 39 39 H 1.09004 * 109.46968 * 215.61429 * 11 10 7 40 40 H 1.09000 * 109.47138 * 335.61383 * 11 10 7 41 41 H 1.08000 * 119.94389 * 0.02562 * 15 14 12 42 42 H 1.08003 * 120.05078 * 180.23290 * 16 15 14 43 43 H 0.97002 * 119.99807 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.05982 * 179.97438 * 26 17 16 45 45 H 1.07998 * 119.94455 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7593 2.3232 1.2258 5 8 1.7593 2.3231 -1.2258 6 6 3.9330 1.4718 0.0008 7 6 4.6282 2.8347 0.0015 8 1 4.3351 3.3917 0.8915 9 6 6.1449 2.6337 0.0028 10 7 4.2354 3.5839 -1.1946 11 6 4.5211 3.0416 -2.5252 12 6 3.6113 4.7720 -1.0709 13 8 3.2946 5.1807 0.0295 14 6 3.3121 5.5773 -2.2717 15 6 3.5090 6.9633 -2.2494 16 6 3.2388 7.7103 -3.3571 17 6 2.7503 7.0869 -4.5223 18 6 2.4634 7.8565 -5.6696 19 1 2.3742 7.3770 -6.6332 20 6 2.2941 9.2443 -5.5587 21 7 1.8812 9.7640 -4.4334 22 14 2.6588 10.3494 -7.0198 23 1 1.4029 10.6127 -7.7671 24 1 3.2273 11.6343 -6.5389 25 1 3.6363 9.6799 -7.9150 26 6 2.5485 5.6926 -4.5382 27 6 2.8271 4.9531 -3.4274 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 4.2260 0.9145 -0.8890 34 1 4.2253 0.9148 0.8910 35 1 6.4368 2.0765 0.8930 36 1 6.6402 3.6046 0.0029 37 1 6.4384 2.0766 -0.8870 38 1 3.6441 2.5124 -2.8979 39 1 4.7691 3.8573 -3.2045 40 1 5.3627 2.3517 -2.4634 41 1 3.8797 7.4408 -1.3544 42 1 3.3946 8.7789 -3.3401 43 1 1.7645 10.7239 -4.3566 44 1 2.1738 5.2104 -5.4290 45 1 2.6724 3.8843 -3.4385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270411595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:26 Heat of formation + Delta-G solvation = -106.157758 kcal Electronic energy + Delta-G solvation = -28217.121937 eV Core-core repulsion = 24326.068926 eV Total energy + Delta-G solvation = -3891.053012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19772 -39.06137 -37.93470 -37.47310 -36.88614 -35.78186 -34.02286 -33.63616 -31.81420 -31.14112 -28.86276 -27.95872 -27.60105 -25.03823 -24.00733 -22.92222 -21.98682 -20.30280 -19.72198 -19.38730 -18.33434 -17.92912 -17.52839 -17.19795 -16.96245 -16.74590 -16.26654 -15.84264 -15.40716 -15.20866 -14.96370 -14.65097 -14.50644 -14.14798 -14.12644 -13.86592 -13.77142 -13.67028 -13.42725 -13.40786 -13.09042 -13.00992 -12.99696 -12.96249 -12.90726 -12.76804 -12.53957 -12.40724 -12.30970 -12.04393 -11.80466 -11.67345 -11.32020 -11.10301 -11.00477 -10.64609 -9.72434 -9.51817 -9.40772 -8.84285 -6.42067 -0.95825 0.59394 1.18551 1.36706 1.42860 1.56059 1.90244 1.96913 2.10887 2.15878 2.66345 2.77662 3.11153 3.49459 3.68518 3.75164 3.83016 3.92690 4.09817 4.18455 4.26623 4.38331 4.38849 4.45990 4.50204 4.59337 4.70019 4.79322 4.80233 4.84206 4.93288 4.97749 5.03898 5.07475 5.08872 5.25159 5.28217 5.31532 5.61549 5.66900 5.83782 5.99999 6.05694 6.23067 6.44061 6.57062 6.79232 6.93842 7.32184 8.12013 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.003023 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.414733 B = 9259.595307 C = 9774.122151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.587 4.587 3 S 2.370 3.630 4 O -0.996 6.996 5 O -0.970 6.970 6 C -0.605 4.605 7 C 0.132 3.868 8 H 0.077 0.923 9 C -0.145 4.145 10 N -0.615 5.615 11 C 0.064 3.936 12 C 0.576 3.424 13 O -0.606 6.606 14 C -0.295 4.295 15 C -0.055 4.055 16 C -0.212 4.212 17 C 0.099 3.901 18 C -0.474 4.474 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.794 5.794 22 Si 0.988 3.012 23 H -0.257 1.257 24 H -0.266 1.266 25 H -0.251 1.251 26 C -0.256 4.256 27 C -0.032 4.032 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.178 0.822 34 H 0.186 0.814 35 H 0.098 0.902 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.297 0.703 44 H 0.112 0.888 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 -22.186 3.602 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.719 4.719 3 S 2.559 3.441 4 O -0.993 6.993 5 O -0.967 6.967 6 C -0.737 4.737 7 C 0.028 3.972 8 H 0.095 0.905 9 C -0.203 4.203 10 N -0.348 5.348 11 C -0.077 4.077 12 C 0.370 3.630 13 O -0.489 6.489 14 C -0.299 4.299 15 C -0.074 4.074 16 C -0.231 4.231 17 C 0.096 3.904 18 C -0.500 4.500 19 H 0.111 0.889 20 C -0.183 4.183 21 N -0.417 5.417 22 Si 0.807 3.193 23 H -0.182 1.182 24 H -0.190 1.190 25 H -0.174 1.174 26 C -0.275 4.275 27 C -0.051 4.051 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.187 0.813 32 H 0.183 0.817 33 H 0.196 0.804 34 H 0.203 0.797 35 H 0.117 0.883 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.129 0.871 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.130 0.870 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.136 -20.973 4.298 22.271 hybrid contribution 0.044 0.587 -0.116 0.600 sum 6.180 -20.386 4.183 21.709 Atomic orbital electron populations 1.21686 0.91476 1.06139 1.02895 1.30036 1.06638 1.20480 1.14753 1.09054 0.80373 0.80381 0.74243 1.93528 1.82576 1.75801 1.47379 1.93560 1.82098 1.75034 1.46043 1.30607 1.21487 1.05528 1.16051 1.20868 0.98217 0.89351 0.88744 0.90480 1.22074 0.90350 1.02720 1.05170 1.47910 1.58856 1.19709 1.08337 1.22308 1.02579 1.00420 0.82410 1.18669 0.75161 0.80811 0.88343 1.90654 1.55856 1.72633 1.29803 1.19028 1.21891 0.93425 0.95595 1.20436 0.97597 0.92879 0.96533 1.20855 1.08414 0.99099 0.94782 1.18061 0.87031 0.92666 0.92622 1.20121 1.41342 0.92838 0.95735 0.88901 1.27112 0.90450 1.00383 1.00324 1.69860 1.27028 1.15659 1.29143 0.85114 0.80035 0.76794 0.77376 1.18188 1.19021 1.17418 1.20836 1.13167 0.94120 0.99360 1.20882 0.93947 0.99274 0.90962 0.92268 0.91934 0.87082 0.81348 0.81719 0.80384 0.79668 0.88291 0.93472 0.89153 0.90979 0.91488 0.87056 0.89666 0.87785 0.89205 0.86974 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.92 71.98 0.71 -1.81 16 2 C -0.59 -6.63 6.53 71.98 0.47 -6.16 16 3 S 2.37 59.16 4.60 -56.49 -0.26 58.90 16 4 O -1.00 -36.22 18.10 -127.37 -2.30 -38.53 16 5 O -0.97 -33.40 15.67 -127.37 -2.00 -35.40 16 6 C -0.61 -8.79 5.18 71.98 0.37 -8.42 16 7 C 0.13 3.35 2.68 44.99 0.12 3.47 16 8 H 0.08 2.55 6.91 -2.39 -0.02 2.53 16 9 C -0.14 -2.40 9.18 71.98 0.66 -1.74 16 10 N -0.62 -20.61 1.58 -826.23 -1.30 -21.91 16 11 C 0.06 1.66 7.79 127.77 0.99 2.65 16 12 C 0.58 27.18 6.79 86.73 0.59 27.77 16 13 O -0.61 -33.19 16.28 -3.97 -0.06 -33.26 16 14 C -0.30 -15.02 5.16 -19.93 -0.10 -15.13 16 15 C -0.06 -3.01 9.58 22.25 0.21 -2.80 16 16 C -0.21 -11.95 8.72 22.47 0.20 -11.75 16 17 C 0.10 5.46 5.62 -21.28 -0.12 5.34 16 18 C -0.47 -24.88 9.01 23.46 0.21 -24.67 16 19 H 0.09 4.55 7.98 -2.91 -0.02 4.53 16 20 C 0.04 1.85 4.98 85.36 0.43 2.27 16 21 N -0.79 -41.40 11.10 21.87 0.24 -41.15 16 22 Si 0.99 36.25 29.64 68.60 2.03 38.28 16 23 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 24 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 25 H -0.25 -8.91 7.11 99.48 0.71 -8.21 16 26 C -0.26 -12.75 9.73 22.47 0.22 -12.53 16 27 C -0.03 -1.52 7.55 22.25 0.17 -1.35 16 28 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.17 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.16 0.70 8.14 -2.39 -0.02 0.69 16 33 H 0.18 1.02 7.67 -2.39 -0.02 1.00 16 34 H 0.19 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.01 6.67 -2.39 -0.02 0.99 16 38 H 0.07 1.79 6.07 -2.39 -0.01 1.77 16 39 H 0.07 2.05 6.02 -2.38 -0.01 2.04 16 40 H 0.11 1.68 6.44 -2.39 -0.02 1.67 16 41 H 0.09 4.60 8.06 -2.91 -0.02 4.57 16 42 H 0.10 5.99 6.02 -2.91 -0.02 5.98 16 43 H 0.30 13.77 8.29 -92.71 -0.77 13.00 16 44 H 0.11 5.07 8.06 -2.91 -0.02 5.04 16 45 H 0.13 5.43 5.53 -2.91 -0.02 5.41 16 Total: -1.00 -89.59 375.56 2.48 -87.11 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 1.00 Total: 30.80 kcal Atomic # 6 Polarization: -49.98 SS G_CDS: 5.13 Total: -44.85 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -1.06 Total: -63.06 kcal Atomic # 8 Polarization: -102.82 SS G_CDS: -4.36 Total: -107.19 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.28 kcal Atomic # 16 Polarization: 59.16 SS G_CDS: -0.26 Total: 58.90 kcal Total: -89.59 2.48 -87.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270411595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.044 kcal (2) G-P(sol) polarization free energy of solvation -89.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds