Wall clock time and date at job start Tue Mar 31 2020 22:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47118 * 2 1 4 4 C 1.53003 * 109.46775 * 120.00040 * 2 1 3 5 5 H 1.08999 * 109.47222 * 59.57329 * 4 2 1 6 6 C 1.52999 * 109.47346 * 299.56792 * 4 2 1 7 7 S 1.81402 * 109.46921 * 179.56612 * 4 2 1 8 8 C 1.81398 * 101.92365 * 176.81411 * 7 4 2 9 9 O 1.42097 * 108.58048 * 291.30580 * 7 4 2 10 10 O 1.42103 * 108.57528 * 62.32805 * 7 4 2 11 11 N 1.46495 * 109.46949 * 239.99777 * 2 1 3 12 12 C 1.46498 * 120.00664 * 301.24120 * 11 2 1 13 13 C 1.34783 * 119.99588 * 120.96841 * 11 2 1 14 14 O 1.21583 * 120.00208 * 3.92678 * 13 11 2 15 15 C 1.47639 * 119.99889 * 183.92402 * 13 11 2 16 16 C 1.40012 * 119.89795 * 23.98509 * 15 13 11 17 17 C 1.36316 * 120.10945 * 179.71501 * 16 15 13 18 18 C 1.40880 * 119.89154 * 0.57470 * 17 16 15 19 19 C 1.41110 * 120.10684 * 179.67671 * 18 17 16 20 20 H 1.08002 * 120.00403 * 159.36472 * 19 18 17 21 21 C 1.40229 * 119.99757 * 339.36414 * 19 18 17 22 22 N 1.30642 * 120.00009 * 331.08216 * 21 19 18 23 23 Si 1.86796 * 119.99993 * 151.08029 * 21 19 18 24 24 H 1.48497 * 109.46999 * 94.99115 * 23 21 19 25 25 H 1.48496 * 109.47281 * 214.99256 * 23 21 19 26 26 H 1.48504 * 109.47088 * 334.99402 * 23 21 19 27 27 C 1.40890 * 119.79247 * 359.69373 * 18 17 16 28 28 C 1.36314 * 119.89279 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.47272 * 60.00046 * 1 2 3 30 30 H 1.09001 * 109.47562 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47317 * 299.99831 * 1 2 3 32 32 H 1.08999 * 109.47172 * 180.02562 * 6 4 2 33 33 H 1.08999 * 109.46850 * 299.99897 * 6 4 2 34 34 H 1.08998 * 109.47071 * 59.99837 * 6 4 2 35 35 H 1.09003 * 109.47080 * 60.00190 * 8 7 4 36 36 H 1.08997 * 109.47488 * 180.02562 * 8 7 4 37 37 H 1.09005 * 109.47049 * 300.00704 * 8 7 4 38 38 H 1.09007 * 109.46778 * 84.87551 * 12 11 2 39 39 H 1.08991 * 109.47286 * 204.87368 * 12 11 2 40 40 H 1.08998 * 109.46795 * 324.87896 * 12 11 2 41 41 H 1.08011 * 119.94239 * 359.97438 * 16 15 13 42 42 H 1.08002 * 120.05171 * 180.25358 * 17 16 15 43 43 H 0.97004 * 120.00352 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.05589 * 179.97438 * 27 18 17 45 45 H 1.07995 * 119.94893 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6703 -1.7467 1.2531 6 6 1.5388 0.0062 2.4985 7 16 3.8539 -0.7325 1.2429 8 6 4.2293 -1.5315 2.8275 9 8 4.2977 -1.5800 0.1922 10 8 4.3150 0.6107 1.2926 11 7 2.0182 -0.6906 -1.1961 12 6 1.6421 -2.0850 -1.4418 13 6 2.8091 -0.0414 -2.0734 14 8 3.1757 1.0935 -1.8371 15 6 3.2304 -0.7084 -3.3213 16 6 2.4613 -1.7530 -3.8483 17 6 2.8431 -2.3680 -5.0034 18 6 4.0202 -1.9591 -5.6606 19 6 4.4233 -2.5971 -6.8529 20 1 5.1041 -2.1000 -7.5280 21 6 3.9399 -3.8768 -7.1613 22 7 3.6152 -4.7013 -6.2013 23 14 3.7601 -4.4026 -8.9447 24 1 4.9742 -5.1465 -9.3662 25 1 2.5692 -5.2786 -9.0849 26 1 3.5939 -3.2006 -9.8008 27 6 4.7939 -0.9113 -5.1235 28 6 4.4010 -0.2984 -3.9710 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.9024 -0.5074 3.3885 33 1 1.9085 1.0315 2.4946 34 1 0.4488 0.0129 2.5023 35 1 3.7955 -2.5314 2.8421 36 1 5.3099 -1.6021 2.9519 37 1 3.8080 -0.9408 3.6411 38 1 0.6747 -2.1174 -1.9432 39 1 2.3943 -2.5585 -2.0727 40 1 1.5772 -2.6165 -0.4924 41 1 1.5617 -2.0692 -3.3409 42 1 2.2469 -3.1710 -5.4112 43 1 3.2804 -5.5864 -6.4146 44 1 5.6972 -0.5946 -5.6236 45 1 4.9935 0.5046 -3.5583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270430198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:24 Heat of formation + Delta-G solvation = -62.631300 kcal Electronic energy + Delta-G solvation = -28575.724744 eV Core-core repulsion = 24686.559181 eV Total energy + Delta-G solvation = -3889.165563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.76331 -37.40881 -36.85272 -36.32665 -35.79595 -34.09546 -33.49631 -30.74039 -29.67621 -29.42594 -28.85185 -26.68144 -26.06946 -24.88473 -22.17197 -20.92632 -20.54785 -18.95122 -18.64576 -17.46921 -17.10049 -16.49255 -16.24546 -16.02039 -15.56163 -15.34231 -14.85180 -14.26590 -14.10888 -13.69797 -13.62435 -13.40680 -13.29667 -13.05492 -12.97810 -12.74817 -12.54262 -12.30545 -12.22275 -12.06697 -11.97673 -11.84656 -11.79122 -11.73316 -11.42553 -11.22107 -11.08784 -10.99604 -10.92533 -10.84200 -10.53416 -10.21363 -10.01922 -9.41519 -9.10484 -8.85197 -8.32770 -7.58135 -7.50390 -7.06705 -4.49249 -0.00988 2.35676 2.76263 2.91472 2.97158 3.05728 3.13119 3.36355 3.67291 3.76868 3.85165 3.97909 4.30803 4.44549 4.54817 4.63141 4.83222 4.90671 5.07405 5.14580 5.28309 5.36518 5.42214 5.49341 5.59876 5.62549 5.68188 5.76857 5.82723 6.06630 6.10974 6.23961 6.29737 6.41813 6.82749 6.88356 6.94353 7.13551 7.21987 7.52289 7.67891 7.84942 7.94829 8.09341 8.16807 8.46097 8.70248 8.85309 9.03917 9.85864 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020315 B = 0.003138 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.987643 B = 8921.099518 C = 9055.511642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 H 0.115 0.885 4 C -0.590 4.590 5 H 0.137 0.863 6 C -0.143 4.143 7 S 2.415 3.585 8 C -0.668 4.668 9 O -0.911 6.911 10 O -0.926 6.926 11 N -0.628 5.628 12 C 0.073 3.927 13 C 0.576 3.424 14 O -0.565 6.565 15 C -0.281 4.281 16 C -0.077 4.077 17 C -0.192 4.192 18 C 0.129 3.871 19 C -0.447 4.447 20 H 0.086 0.914 21 C 0.083 3.917 22 N -0.756 5.756 23 Si 0.904 3.096 24 H -0.267 1.267 25 H -0.272 1.272 26 H -0.256 1.256 27 C -0.242 4.242 28 C -0.018 4.018 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.053 0.947 39 H 0.109 0.891 40 H 0.050 0.950 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.287 0.713 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 -0.182 15.976 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.050 3.950 3 H 0.133 0.867 4 C -0.700 4.700 5 H 0.155 0.845 6 C -0.201 4.201 7 S 2.594 3.406 8 C -0.816 4.816 9 O -0.908 6.908 10 O -0.923 6.923 11 N -0.363 5.363 12 C -0.069 4.069 13 C 0.373 3.627 14 O -0.445 6.445 15 C -0.285 4.285 16 C -0.095 4.095 17 C -0.211 4.211 18 C 0.126 3.874 19 C -0.474 4.474 20 H 0.104 0.896 21 C -0.140 4.140 22 N -0.378 5.378 23 Si 0.727 3.273 24 H -0.192 1.192 25 H -0.197 1.197 26 H -0.179 1.179 27 C -0.261 4.261 28 C -0.037 4.037 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.071 0.929 39 H 0.127 0.873 40 H 0.069 0.931 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.521 0.462 15.530 16.850 hybrid contribution -0.693 -1.032 0.022 1.243 sum -7.215 -0.569 15.552 17.153 Atomic orbital electron populations 1.22097 0.93730 1.02582 1.02645 1.20579 0.95625 0.97661 0.81177 0.86709 1.30601 1.26217 1.09268 1.03872 0.84483 1.21740 1.04200 1.01055 0.93118 1.08359 0.78341 0.76547 0.77340 1.30454 1.12205 1.14424 1.24511 1.93668 1.78331 1.68509 1.50322 1.93601 1.78142 1.34202 1.86371 1.47906 1.52181 1.13438 1.22753 1.22402 1.01248 0.81918 1.01372 1.18816 0.75568 0.85024 0.83245 1.90677 1.56874 1.18989 1.78001 1.18698 1.03637 1.06768 0.99404 1.21193 0.98334 0.94045 0.95944 1.20814 0.98761 1.03695 0.97812 1.17725 0.89592 0.89500 0.90557 1.19801 1.23728 0.99461 1.04388 0.89644 1.26091 0.92177 0.96101 0.99671 1.69821 1.26964 1.05988 1.35049 0.86363 0.78939 0.79548 0.82452 1.19248 1.19699 1.17935 1.20619 1.01894 1.04430 0.99188 1.20312 0.93737 0.95838 0.93808 0.91538 0.92046 0.91309 0.91330 0.90292 0.89836 0.85565 0.85451 0.85602 0.92917 0.87279 0.93090 0.87037 0.87053 0.90195 0.88525 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.83 37.16 0.33 -1.26 16 2 C 0.15 2.16 2.22 -67.93 -0.15 2.00 16 3 H 0.12 1.86 6.91 -51.93 -0.36 1.50 16 4 C -0.59 -6.12 2.22 -26.73 -0.06 -6.18 16 5 H 0.14 1.06 6.75 -51.92 -0.35 0.70 16 6 C -0.14 -1.00 8.58 37.16 0.32 -0.68 16 7 S 2.41 32.99 4.71 -107.50 -0.51 32.49 16 8 C -0.67 -5.32 10.07 101.05 1.02 -4.30 16 9 O -0.91 -16.60 16.59 -57.83 -0.96 -17.56 16 10 O -0.93 -16.27 18.04 -57.83 -1.04 -17.31 16 11 N -0.63 -11.04 1.61 -175.13 -0.28 -11.32 16 12 C 0.07 1.11 7.47 59.85 0.45 1.56 16 13 C 0.58 13.06 7.12 -12.42 -0.09 12.97 16 14 O -0.56 -14.18 15.91 5.29 0.08 -14.09 16 15 C -0.28 -6.83 5.55 -104.73 -0.58 -7.41 16 16 C -0.08 -1.76 7.45 -39.61 -0.30 -2.05 16 17 C -0.19 -4.79 8.71 -39.27 -0.34 -5.13 16 18 C 0.13 3.40 5.59 -106.81 -0.60 2.80 16 19 C -0.45 -11.38 8.98 -37.75 -0.34 -11.72 16 20 H 0.09 2.09 7.99 -52.49 -0.42 1.67 16 21 C 0.08 1.96 4.89 -17.31 -0.08 1.87 16 22 N -0.76 -18.16 11.42 55.56 0.63 -17.53 16 23 Si 0.90 17.34 29.65 -169.99 -5.04 12.30 16 24 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 25 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 26 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 27 C -0.24 -6.16 9.73 -39.27 -0.38 -6.55 16 28 C -0.02 -0.45 9.52 -39.61 -0.38 -0.83 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.56 7.64 -51.93 -0.40 0.17 16 31 H 0.07 0.55 6.44 -51.93 -0.33 0.21 16 32 H 0.07 0.29 6.44 -51.93 -0.33 -0.04 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.46 6.44 -51.93 -0.33 0.13 16 35 H 0.13 0.73 8.14 -51.92 -0.42 0.30 16 36 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.13 0.68 6.80 -51.92 -0.35 0.33 16 38 H 0.05 0.71 7.15 -51.93 -0.37 0.34 16 39 H 0.11 2.01 5.01 -51.93 -0.26 1.75 16 40 H 0.05 0.60 6.52 -51.93 -0.34 0.26 16 41 H 0.11 2.16 4.25 -52.48 -0.22 1.94 16 42 H 0.11 2.77 6.29 -52.49 -0.33 2.44 16 43 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 44 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 45 H 0.10 2.40 7.82 -52.49 -0.41 1.99 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -34.97 367.56 -8.82 -43.79 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.06 Total: 8.60 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -1.19 Total: -24.90 kcal Atomic # 7 Polarization: -29.20 SS G_CDS: 0.35 Total: -28.85 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -1.92 Total: -48.96 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.04 Total: 12.30 kcal Atomic # 16 Polarization: 32.99 SS G_CDS: -0.51 Total: 32.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.97 -8.82 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270430198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.844 kcal (2) G-P(sol) polarization free energy of solvation -34.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds