Wall clock time and date at job start Tue Mar 31 2020 22:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47118 * 2 1 4 4 C 1.53003 * 109.46775 * 120.00040 * 2 1 3 5 5 H 1.08999 * 109.47222 * 59.57329 * 4 2 1 6 6 C 1.52999 * 109.47346 * 299.56792 * 4 2 1 7 7 S 1.81402 * 109.46921 * 179.56612 * 4 2 1 8 8 C 1.81398 * 101.92365 * 176.81411 * 7 4 2 9 9 O 1.42097 * 108.58048 * 291.30580 * 7 4 2 10 10 O 1.42103 * 108.57528 * 62.32805 * 7 4 2 11 11 N 1.46495 * 109.46949 * 239.99777 * 2 1 3 12 12 C 1.46498 * 120.00664 * 301.24120 * 11 2 1 13 13 C 1.34783 * 119.99588 * 120.96841 * 11 2 1 14 14 O 1.21583 * 120.00208 * 3.92678 * 13 11 2 15 15 C 1.47639 * 119.99889 * 183.92402 * 13 11 2 16 16 C 1.40012 * 119.89795 * 23.98509 * 15 13 11 17 17 C 1.36316 * 120.10945 * 179.71501 * 16 15 13 18 18 C 1.40880 * 119.89154 * 0.57470 * 17 16 15 19 19 C 1.41110 * 120.10684 * 179.67671 * 18 17 16 20 20 H 1.08002 * 120.00403 * 159.36472 * 19 18 17 21 21 C 1.40229 * 119.99757 * 339.36414 * 19 18 17 22 22 N 1.30642 * 120.00009 * 331.08216 * 21 19 18 23 23 Si 1.86796 * 119.99993 * 151.08029 * 21 19 18 24 24 H 1.48497 * 109.46999 * 94.99115 * 23 21 19 25 25 H 1.48496 * 109.47281 * 214.99256 * 23 21 19 26 26 H 1.48504 * 109.47088 * 334.99402 * 23 21 19 27 27 C 1.40890 * 119.79247 * 359.69373 * 18 17 16 28 28 C 1.36314 * 119.89279 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.47272 * 60.00046 * 1 2 3 30 30 H 1.09001 * 109.47562 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47317 * 299.99831 * 1 2 3 32 32 H 1.08999 * 109.47172 * 180.02562 * 6 4 2 33 33 H 1.08999 * 109.46850 * 299.99897 * 6 4 2 34 34 H 1.08998 * 109.47071 * 59.99837 * 6 4 2 35 35 H 1.09003 * 109.47080 * 60.00190 * 8 7 4 36 36 H 1.08997 * 109.47488 * 180.02562 * 8 7 4 37 37 H 1.09005 * 109.47049 * 300.00704 * 8 7 4 38 38 H 1.09007 * 109.46778 * 84.87551 * 12 11 2 39 39 H 1.08991 * 109.47286 * 204.87368 * 12 11 2 40 40 H 1.08998 * 109.46795 * 324.87896 * 12 11 2 41 41 H 1.08011 * 119.94239 * 359.97438 * 16 15 13 42 42 H 1.08002 * 120.05171 * 180.25358 * 17 16 15 43 43 H 0.97004 * 120.00352 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.05589 * 179.97438 * 27 18 17 45 45 H 1.07995 * 119.94893 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6703 -1.7467 1.2531 6 6 1.5388 0.0062 2.4985 7 16 3.8539 -0.7325 1.2429 8 6 4.2293 -1.5315 2.8275 9 8 4.2977 -1.5800 0.1922 10 8 4.3150 0.6107 1.2926 11 7 2.0182 -0.6906 -1.1961 12 6 1.6421 -2.0850 -1.4418 13 6 2.8091 -0.0414 -2.0734 14 8 3.1757 1.0935 -1.8371 15 6 3.2304 -0.7084 -3.3213 16 6 2.4613 -1.7530 -3.8483 17 6 2.8431 -2.3680 -5.0034 18 6 4.0202 -1.9591 -5.6606 19 6 4.4233 -2.5971 -6.8529 20 1 5.1041 -2.1000 -7.5280 21 6 3.9399 -3.8768 -7.1613 22 7 3.6152 -4.7013 -6.2013 23 14 3.7601 -4.4026 -8.9447 24 1 4.9742 -5.1465 -9.3662 25 1 2.5692 -5.2786 -9.0849 26 1 3.5939 -3.2006 -9.8008 27 6 4.7939 -0.9113 -5.1235 28 6 4.4010 -0.2984 -3.9710 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.9024 -0.5074 3.3885 33 1 1.9085 1.0315 2.4946 34 1 0.4488 0.0129 2.5023 35 1 3.7955 -2.5314 2.8421 36 1 5.3099 -1.6021 2.9519 37 1 3.8080 -0.9408 3.6411 38 1 0.6747 -2.1174 -1.9432 39 1 2.3943 -2.5585 -2.0727 40 1 1.5772 -2.6165 -0.4924 41 1 1.5617 -2.0692 -3.3409 42 1 2.2469 -3.1710 -5.4112 43 1 3.2804 -5.5864 -6.4146 44 1 5.6972 -0.5946 -5.6236 45 1 4.9935 0.5046 -3.5583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270430198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:23 Heat of formation + Delta-G solvation = -87.522761 kcal Electronic energy + Delta-G solvation = -28576.804119 eV Core-core repulsion = 24686.559181 eV Total energy + Delta-G solvation = -3890.244937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32155 -39.12685 -37.99950 -37.81023 -36.92207 -35.83323 -34.84828 -32.16715 -31.39614 -30.78264 -29.68257 -28.06406 -27.72235 -25.90759 -23.74423 -22.80072 -21.92959 -20.47195 -19.69167 -19.34696 -18.30277 -17.80912 -17.54455 -17.36576 -17.05458 -16.57920 -16.19825 -15.91102 -15.45762 -15.13113 -14.75491 -14.46553 -14.44847 -14.29572 -14.04317 -14.01435 -13.91154 -13.77172 -13.52840 -13.26846 -13.07037 -12.97222 -12.96349 -12.94000 -12.82410 -12.64243 -12.62206 -12.51962 -12.25752 -12.00573 -11.82640 -11.77615 -11.27386 -11.06987 -10.94240 -10.60377 -9.74786 -9.49411 -9.44397 -8.87110 -6.43696 -0.94899 0.51195 1.15479 1.36677 1.42539 1.55772 1.85881 1.99739 2.10020 2.18040 2.68788 2.79417 3.07809 3.42230 3.67807 3.73954 3.91082 4.02693 4.07184 4.18853 4.23107 4.27483 4.39177 4.40587 4.51766 4.64535 4.68126 4.73493 4.86712 4.91373 4.92304 4.94984 5.01897 5.04349 5.15558 5.21984 5.31197 5.34916 5.57071 5.65308 5.82122 5.93184 6.01631 6.22132 6.44111 6.52857 6.76365 6.91344 7.33667 8.10092 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020315 B = 0.003138 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.987643 B = 8921.099518 C = 9055.511642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.140 3.860 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.177 0.823 6 C -0.148 4.148 7 S 2.369 3.631 8 C -0.635 4.635 9 O -0.979 6.979 10 O -0.990 6.990 11 N -0.618 5.618 12 C 0.062 3.938 13 C 0.570 3.430 14 O -0.605 6.605 15 C -0.299 4.299 16 C -0.062 4.062 17 C -0.210 4.210 18 C 0.102 3.898 19 C -0.478 4.478 20 H 0.083 0.917 21 C 0.048 3.952 22 N -0.779 5.779 23 Si 0.983 3.017 24 H -0.259 1.259 25 H -0.256 1.256 26 H -0.260 1.260 27 C -0.261 4.261 28 C -0.037 4.037 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.161 0.839 36 H 0.131 0.869 37 H 0.162 0.838 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.150 0.850 42 H 0.112 0.888 43 H 0.301 0.699 44 H 0.099 0.901 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.451 -2.893 18.460 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.036 3.964 3 H 0.098 0.902 4 C -0.677 4.677 5 H 0.195 0.805 6 C -0.206 4.206 7 S 2.559 3.441 8 C -0.787 4.787 9 O -0.976 6.976 10 O -0.987 6.987 11 N -0.351 5.351 12 C -0.079 4.079 13 C 0.366 3.634 14 O -0.489 6.489 15 C -0.303 4.303 16 C -0.081 4.081 17 C -0.229 4.229 18 C 0.099 3.901 19 C -0.504 4.504 20 H 0.101 0.899 21 C -0.174 4.174 22 N -0.401 5.401 23 Si 0.802 3.198 24 H -0.183 1.183 25 H -0.180 1.180 26 H -0.184 1.184 27 C -0.281 4.281 28 C -0.056 4.056 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.180 0.820 36 H 0.149 0.851 37 H 0.180 0.820 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.167 0.833 42 H 0.130 0.870 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.723 -2.249 18.014 20.593 hybrid contribution 0.280 -0.234 -0.536 0.649 sum -9.443 -2.483 17.477 20.020 Atomic orbital electron populations 1.22104 0.90259 1.04461 1.03504 1.20933 0.98189 0.96190 0.81060 0.90162 1.30380 1.22070 1.11582 1.03668 0.80522 1.21943 1.05867 1.00343 0.92419 1.08980 0.80333 0.75474 0.79344 1.30131 1.13193 1.15790 1.19634 1.93598 1.80337 1.68943 1.54692 1.93528 1.80058 1.37260 1.87877 1.47846 1.50382 1.14111 1.22722 1.22541 1.01108 0.80538 1.03719 1.18639 0.76433 0.84629 0.83715 1.90641 1.58673 1.20701 1.78875 1.19064 1.03415 1.07283 1.00562 1.21520 0.99024 0.92581 0.94931 1.20886 0.98746 1.04453 0.98818 1.18069 0.90477 0.90065 0.91465 1.20065 1.24974 1.00818 1.04498 0.89872 1.26923 0.91092 0.95188 1.04214 1.69806 1.26273 1.06765 1.37286 0.85194 0.79579 0.79004 0.76055 1.18346 1.18015 1.18376 1.20726 1.02445 1.05228 0.99651 1.20437 0.94779 0.96089 0.94295 0.93250 0.89507 0.88078 0.87426 0.91747 0.87142 0.82037 0.85078 0.81985 0.90183 0.90691 0.88598 0.83306 0.87025 0.88739 0.88316 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.83 71.98 0.64 -1.87 16 2 C 0.14 3.71 2.22 44.99 0.10 3.81 16 3 H 0.08 2.71 6.91 -2.39 -0.02 2.69 16 4 C -0.56 -9.85 2.22 30.60 0.07 -9.78 16 5 H 0.18 1.65 6.75 -2.39 -0.02 1.64 16 6 C -0.15 -1.36 8.58 71.98 0.62 -0.75 16 7 S 2.37 64.00 4.71 -56.49 -0.27 63.73 16 8 C -0.63 -7.53 10.07 113.37 1.14 -6.39 16 9 O -0.98 -37.12 16.59 -127.37 -2.11 -39.24 16 10 O -0.99 -37.02 18.04 -127.37 -2.30 -39.32 16 11 N -0.62 -21.56 1.61 -826.25 -1.33 -22.89 16 12 C 0.06 1.77 7.47 127.77 0.95 2.72 16 13 C 0.57 27.21 7.12 86.72 0.62 27.83 16 14 O -0.60 -32.75 15.91 -3.98 -0.06 -32.81 16 15 C -0.30 -15.38 5.55 -19.93 -0.11 -15.49 16 16 C -0.06 -2.94 7.45 22.25 0.17 -2.77 16 17 C -0.21 -10.84 8.71 22.47 0.20 -10.65 16 18 C 0.10 5.66 5.59 -21.28 -0.12 5.54 16 19 C -0.48 -25.22 8.98 23.46 0.21 -25.01 16 20 H 0.08 4.26 7.99 -2.91 -0.02 4.24 16 21 C 0.05 2.27 4.89 85.35 0.42 2.68 16 22 N -0.78 -37.41 11.42 21.87 0.25 -37.16 16 23 Si 0.98 35.11 29.65 68.60 2.03 37.14 16 24 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 25 H -0.26 -8.46 7.11 99.48 0.71 -7.75 16 26 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 27 C -0.26 -14.35 9.73 22.47 0.22 -14.13 16 28 C -0.04 -2.02 9.52 22.25 0.21 -1.81 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.10 7.64 -2.39 -0.02 1.08 16 31 H 0.10 1.12 6.44 -2.39 -0.02 1.11 16 32 H 0.11 0.20 6.44 -2.39 -0.02 0.18 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 0.52 6.44 -2.39 -0.02 0.50 16 35 H 0.16 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.16 0.81 6.80 -2.39 -0.02 0.79 16 38 H 0.08 1.86 7.15 -2.38 -0.02 1.84 16 39 H 0.07 2.72 5.01 -2.39 -0.01 2.71 16 40 H 0.10 1.85 6.52 -2.39 -0.02 1.84 16 41 H 0.15 5.68 4.25 -2.90 -0.01 5.67 16 42 H 0.11 5.66 6.29 -2.91 -0.02 5.64 16 43 H 0.30 12.57 8.29 -92.71 -0.77 11.81 16 44 H 0.10 5.14 8.06 -2.91 -0.02 5.12 16 45 H 0.09 4.81 7.82 -2.91 -0.02 4.79 16 Total: -1.00 -87.83 367.56 2.56 -85.27 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 1.02 Total: 31.33 kcal Atomic # 6 Polarization: -51.38 SS G_CDS: 5.33 Total: -46.06 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -1.08 Total: -60.05 kcal Atomic # 8 Polarization: -106.89 SS G_CDS: -4.47 Total: -111.37 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Atomic # 16 Polarization: 64.00 SS G_CDS: -0.27 Total: 63.73 kcal Total: -87.83 2.56 -85.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270430198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.250 kcal (2) G-P(sol) polarization free energy of solvation -87.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds