Wall clock time and date at job start Tue Mar 31 2020 22:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47044 * 2 1 4 4 C 1.34775 * 120.00188 * 262.15110 * 3 2 1 5 5 O 1.21581 * 120.00668 * 174.38646 * 4 3 2 6 6 C 1.47645 * 119.99861 * 354.39202 * 4 3 2 7 7 C 1.40012 * 119.89458 * 223.72385 * 6 4 3 8 8 C 1.36323 * 120.10433 * 179.75864 * 7 6 4 9 9 C 1.40891 * 119.88957 * 0.50986 * 8 7 6 10 10 C 1.41114 * 120.09865 * 179.71814 * 9 8 7 11 11 H 1.07998 * 119.99603 * 209.73629 * 10 9 8 12 12 C 1.40227 * 119.99778 * 29.73951 * 10 9 8 13 13 N 1.30643 * 120.00495 * 12.11934 * 12 10 9 14 14 Si 1.86802 * 119.99501 * 192.12207 * 12 10 9 15 15 H 1.48499 * 109.47259 * 59.99845 * 14 12 10 16 16 H 1.48507 * 109.47098 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47217 * 299.99865 * 14 12 10 18 18 C 1.40882 * 119.79597 * 359.74052 * 9 8 7 19 19 C 1.36318 * 119.89380 * 0.02562 * 18 9 8 20 20 C 1.46503 * 120.00028 * 82.15525 * 3 2 1 21 21 H 1.09002 * 109.46966 * 179.97438 * 20 3 2 22 22 C 1.52998 * 109.47115 * 60.00203 * 20 3 2 23 23 C 1.52994 * 109.47192 * 299.99664 * 20 3 2 24 24 S 1.81403 * 109.47247 * 300.00129 * 23 20 3 25 25 C 1.81397 * 101.92080 * 179.97438 * 24 23 20 26 26 O 1.42098 * 108.58109 * 294.48715 * 24 23 20 27 27 O 1.42101 * 108.57735 * 65.51372 * 24 23 20 28 28 H 1.09003 * 109.47332 * 177.47796 * 1 2 3 29 29 H 1.08994 * 109.47586 * 297.48292 * 1 2 3 30 30 H 1.09008 * 109.46921 * 57.48073 * 1 2 3 31 31 H 1.08997 * 109.47159 * 239.99704 * 2 1 3 32 32 H 1.09003 * 109.46620 * 119.99623 * 2 1 3 33 33 H 1.07993 * 119.94976 * 0.02562 * 7 6 4 34 34 H 1.08001 * 120.04955 * 180.23204 * 8 7 6 35 35 H 0.96997 * 120.00085 * 179.97438 * 13 12 10 36 36 H 1.08001 * 120.05197 * 179.97438 * 18 9 8 37 37 H 1.07997 * 119.95265 * 179.97438 * 19 18 9 38 38 H 1.09002 * 109.46814 * 180.02562 * 22 20 3 39 39 H 1.09002 * 109.46716 * 299.99555 * 22 20 3 40 40 H 1.08995 * 109.47692 * 59.99658 * 22 20 3 41 41 H 1.09002 * 109.47214 * 60.00093 * 23 20 3 42 42 H 1.09002 * 109.47509 * 180.02562 * 23 20 3 43 43 H 1.09000 * 109.47136 * 59.99987 * 25 24 23 44 44 H 1.09004 * 109.47013 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.47453 * 299.99818 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3932 1.9634 -1.1562 5 8 2.7011 3.1395 -1.1729 6 6 2.4298 1.1731 -2.4028 7 6 3.5146 1.3013 -3.2787 8 6 3.5551 0.5700 -4.4285 9 6 2.4981 -0.3078 -4.7399 10 6 2.5327 -1.0625 -5.9318 11 1 1.6113 -1.3417 -6.4210 12 6 3.7635 -1.4499 -6.4808 13 7 4.8595 -1.3245 -5.7809 14 14 3.8360 -2.1454 -8.2130 15 1 3.3160 -1.1386 -9.1728 16 1 5.2427 -2.4760 -8.5552 17 1 3.0067 -3.3751 -8.2878 18 6 1.4062 -0.4295 -3.8579 19 6 1.3767 0.3023 -2.7082 20 6 2.0992 2.1295 1.2569 21 1 2.4824 3.1307 1.0596 22 6 3.0395 1.4051 2.2221 23 6 0.7060 2.2301 1.8811 24 16 -0.4089 3.0891 0.7366 25 6 -1.9679 3.0925 1.6639 26 8 0.0359 4.4310 0.5928 27 8 -0.5743 2.2850 -0.4233 28 1 -0.3634 -1.0267 -0.0452 29 1 -0.3634 0.4742 0.9116 30 1 -0.3633 0.5525 -0.8666 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 4.3224 1.9774 -3.0411 34 1 4.3941 0.6669 -5.1017 35 1 5.7108 -1.5928 -6.1605 36 1 0.5935 -1.1009 -4.0927 37 1 0.5400 0.2101 -2.0317 38 1 3.0993 1.9617 3.1574 39 1 2.6566 0.4038 2.4195 40 1 4.0321 1.3334 1.7775 41 1 0.3231 1.2288 2.0784 42 1 0.7661 2.7873 2.8160 43 1 -1.8294 3.6237 2.6056 44 1 -2.7393 3.5897 1.0758 45 1 -2.2720 2.0657 1.8673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270444324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:46 Heat of formation + Delta-G solvation = -54.819456 kcal Electronic energy + Delta-G solvation = -28859.331201 eV Core-core repulsion = 24970.504386 eV Total energy + Delta-G solvation = -3888.826816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.91602 -37.32343 -36.98443 -36.24333 -35.81650 -33.94515 -32.76063 -30.39736 -29.96548 -29.48167 -29.24700 -27.83877 -25.81936 -23.09730 -22.56262 -21.10819 -20.53774 -18.90485 -18.85591 -17.54222 -16.93970 -16.63023 -16.27252 -16.16546 -15.64747 -15.29980 -14.67513 -14.30148 -13.93023 -13.64055 -13.58106 -13.47213 -13.42637 -13.32346 -13.01186 -12.57004 -12.45487 -12.42114 -12.16281 -12.12221 -11.91756 -11.85409 -11.67829 -11.41661 -11.21240 -11.12741 -11.04864 -10.95157 -10.68835 -10.53743 -10.39572 -10.26350 -9.83422 -9.32834 -9.27414 -8.92838 -8.39428 -7.55992 -7.33897 -6.84466 -4.48250 -0.07787 2.42732 2.72736 3.01703 3.02757 3.06406 3.11814 3.33388 3.62624 3.74815 3.86642 3.93739 4.38128 4.51718 4.57470 4.60522 4.88750 5.00784 5.11682 5.24377 5.30606 5.37820 5.56640 5.58242 5.60930 5.64960 5.76316 5.91924 6.02596 6.13647 6.24207 6.33860 6.35580 6.81935 6.91420 6.97690 7.00113 7.19065 7.24338 7.58649 7.69684 7.84181 7.98355 8.08457 8.21274 8.55204 8.77633 8.87604 8.95342 10.08745 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.003173 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.675256 B = 8821.951566 C = 9113.613449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.094 3.906 3 N -0.622 5.622 4 C 0.583 3.417 5 O -0.558 6.558 6 C -0.266 4.266 7 C -0.049 4.049 8 C -0.171 4.171 9 C 0.128 3.872 10 C -0.454 4.454 11 H 0.081 0.919 12 C 0.074 3.926 13 N -0.786 5.786 14 Si 0.913 3.087 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.264 1.264 18 C -0.233 4.233 19 C -0.066 4.066 20 C 0.152 3.848 21 H 0.113 0.887 22 C -0.151 4.151 23 C -0.632 4.632 24 S 2.406 3.594 25 C -0.666 4.666 26 O -0.932 6.932 27 O -0.908 6.908 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.284 0.716 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.141 0.859 42 H 0.135 0.865 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 0.802 16.589 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.028 4.028 3 N -0.356 5.356 4 C 0.378 3.622 5 O -0.437 6.437 6 C -0.270 4.270 7 C -0.068 4.068 8 C -0.190 4.190 9 C 0.125 3.875 10 C -0.483 4.483 11 H 0.099 0.901 12 C -0.145 4.145 13 N -0.410 5.410 14 Si 0.737 3.263 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.189 1.189 18 C -0.252 4.252 19 C -0.084 4.084 20 C 0.047 3.953 21 H 0.131 0.869 22 C -0.210 4.210 23 C -0.761 4.761 24 S 2.587 3.413 25 C -0.814 4.814 26 O -0.929 6.929 27 O -0.905 6.905 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.141 0.859 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.137 0.863 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.138 0.862 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.159 0.841 42 H 0.153 0.847 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.911 1.751 15.737 17.701 hybrid contribution -0.196 -0.815 0.343 0.906 sum -8.106 0.935 16.080 18.032 Atomic orbital electron populations 1.23170 0.96234 1.01869 1.03628 1.21821 0.94338 0.82566 1.04085 1.48130 1.67114 1.14571 1.05817 1.18878 0.73589 0.86471 0.83279 1.90696 1.50303 1.16323 1.86352 1.18810 1.01431 1.09207 0.97595 1.20390 0.95539 0.97027 0.93854 1.20958 1.01583 0.98635 0.97828 1.17771 0.90350 0.88282 0.91049 1.19707 0.93229 1.28880 1.06489 0.90090 1.26009 0.95086 0.94207 0.99190 1.69711 0.99787 1.34820 1.36715 0.86290 0.78135 0.80044 0.81833 1.18680 1.20241 1.18886 1.20767 1.01978 1.05838 0.96654 1.21088 0.96647 0.93660 0.97053 1.20479 0.90801 0.99227 0.84838 0.86901 1.22062 0.99727 1.00702 0.98537 1.30963 1.13050 1.15462 1.16615 1.08465 0.78055 0.76312 0.78430 1.30412 1.24002 1.11132 1.15849 1.93598 1.79750 1.34399 1.85146 1.93667 1.84975 1.68377 1.43444 0.92310 0.94835 0.85936 0.87347 0.91755 0.88936 0.86328 0.90507 0.88544 0.86233 0.91578 0.91923 0.91370 0.84094 0.84713 0.85920 0.85436 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 7.23 37.16 0.27 -2.10 16 2 C 0.09 1.34 5.24 -4.05 -0.02 1.32 16 3 N -0.62 -10.30 1.51 -167.29 -0.25 -10.55 16 4 C 0.58 12.71 6.76 -12.42 -0.08 12.63 16 5 O -0.56 -13.76 16.31 5.29 0.09 -13.67 16 6 C -0.27 -6.26 5.16 -104.72 -0.54 -6.80 16 7 C -0.05 -1.22 9.60 -39.61 -0.38 -1.60 16 8 C -0.17 -4.46 8.59 -39.27 -0.34 -4.80 16 9 C 0.13 3.35 5.53 -106.80 -0.59 2.76 16 10 C -0.45 -11.66 9.04 -37.74 -0.34 -12.00 16 11 H 0.08 1.98 7.88 -52.49 -0.41 1.57 16 12 C 0.07 1.81 5.22 -17.31 -0.09 1.72 16 13 N -0.79 -19.72 10.97 55.56 0.61 -19.11 16 14 Si 0.91 18.10 29.58 -169.99 -5.03 13.07 16 15 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 16 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 18 C -0.23 -5.54 9.73 -39.27 -0.38 -5.93 16 19 C -0.07 -1.47 7.31 -39.61 -0.29 -1.76 16 20 C 0.15 2.02 2.69 -67.93 -0.18 1.83 16 21 H 0.11 1.76 6.91 -51.93 -0.36 1.40 16 22 C -0.15 -1.56 9.15 37.16 0.34 -1.22 16 23 C -0.63 -5.78 4.66 37.15 0.17 -5.60 16 24 S 2.41 29.01 4.83 -107.50 -0.52 28.49 16 25 C -0.67 -4.52 10.62 101.05 1.07 -3.45 16 26 O -0.93 -15.62 18.10 -57.83 -1.05 -16.66 16 27 O -0.91 -13.99 11.70 -57.83 -0.68 -14.66 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.03 0.31 4.12 -51.93 -0.21 0.09 16 30 H 0.12 1.88 3.49 -51.96 -0.18 1.70 16 31 H 0.11 1.82 5.00 -51.93 -0.26 1.56 16 32 H 0.06 0.72 6.48 -51.93 -0.34 0.39 16 33 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 34 H 0.12 3.18 6.33 -52.49 -0.33 2.85 16 35 H 0.28 6.49 8.29 -40.82 -0.34 6.15 16 36 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.12 2.32 3.41 -52.49 -0.18 2.14 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.56 6.72 -51.93 -0.35 0.21 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.14 0.94 5.51 -51.92 -0.29 0.65 16 42 H 0.13 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.12 0.56 8.14 -51.92 -0.42 0.14 16 44 H 0.13 0.85 8.14 -51.92 -0.42 0.42 16 45 H 0.13 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 358.09 15.07 5.40 5.40 Total: -1.00 -34.63 358.09 -8.66 -43.29 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.85 Total: 9.40 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -1.39 Total: -24.99 kcal Atomic # 7 Polarization: -30.02 SS G_CDS: 0.36 Total: -29.66 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -1.64 Total: -45.00 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: 29.01 SS G_CDS: -0.52 Total: 28.49 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.63 -8.66 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270444324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.526 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds