Wall clock time and date at job start Tue Mar 31 2020 22:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47044 * 2 1 4 4 C 1.34775 * 120.00188 * 262.15110 * 3 2 1 5 5 O 1.21581 * 120.00668 * 174.38646 * 4 3 2 6 6 C 1.47645 * 119.99861 * 354.39202 * 4 3 2 7 7 C 1.40012 * 119.89458 * 223.72385 * 6 4 3 8 8 C 1.36323 * 120.10433 * 179.75864 * 7 6 4 9 9 C 1.40891 * 119.88957 * 0.50986 * 8 7 6 10 10 C 1.41114 * 120.09865 * 179.71814 * 9 8 7 11 11 H 1.07998 * 119.99603 * 209.73629 * 10 9 8 12 12 C 1.40227 * 119.99778 * 29.73951 * 10 9 8 13 13 N 1.30643 * 120.00495 * 12.11934 * 12 10 9 14 14 Si 1.86802 * 119.99501 * 192.12207 * 12 10 9 15 15 H 1.48499 * 109.47259 * 59.99845 * 14 12 10 16 16 H 1.48507 * 109.47098 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47217 * 299.99865 * 14 12 10 18 18 C 1.40882 * 119.79597 * 359.74052 * 9 8 7 19 19 C 1.36318 * 119.89380 * 0.02562 * 18 9 8 20 20 C 1.46503 * 120.00028 * 82.15525 * 3 2 1 21 21 H 1.09002 * 109.46966 * 179.97438 * 20 3 2 22 22 C 1.52998 * 109.47115 * 60.00203 * 20 3 2 23 23 C 1.52994 * 109.47192 * 299.99664 * 20 3 2 24 24 S 1.81403 * 109.47247 * 300.00129 * 23 20 3 25 25 C 1.81397 * 101.92080 * 179.97438 * 24 23 20 26 26 O 1.42098 * 108.58109 * 294.48715 * 24 23 20 27 27 O 1.42101 * 108.57735 * 65.51372 * 24 23 20 28 28 H 1.09003 * 109.47332 * 177.47796 * 1 2 3 29 29 H 1.08994 * 109.47586 * 297.48292 * 1 2 3 30 30 H 1.09008 * 109.46921 * 57.48073 * 1 2 3 31 31 H 1.08997 * 109.47159 * 239.99704 * 2 1 3 32 32 H 1.09003 * 109.46620 * 119.99623 * 2 1 3 33 33 H 1.07993 * 119.94976 * 0.02562 * 7 6 4 34 34 H 1.08001 * 120.04955 * 180.23204 * 8 7 6 35 35 H 0.96997 * 120.00085 * 179.97438 * 13 12 10 36 36 H 1.08001 * 120.05197 * 179.97438 * 18 9 8 37 37 H 1.07997 * 119.95265 * 179.97438 * 19 18 9 38 38 H 1.09002 * 109.46814 * 180.02562 * 22 20 3 39 39 H 1.09002 * 109.46716 * 299.99555 * 22 20 3 40 40 H 1.08995 * 109.47692 * 59.99658 * 22 20 3 41 41 H 1.09002 * 109.47214 * 60.00093 * 23 20 3 42 42 H 1.09002 * 109.47509 * 180.02562 * 23 20 3 43 43 H 1.09000 * 109.47136 * 59.99987 * 25 24 23 44 44 H 1.09004 * 109.47013 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.47453 * 299.99818 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3932 1.9634 -1.1562 5 8 2.7011 3.1395 -1.1729 6 6 2.4298 1.1731 -2.4028 7 6 3.5146 1.3013 -3.2787 8 6 3.5551 0.5700 -4.4285 9 6 2.4981 -0.3078 -4.7399 10 6 2.5327 -1.0625 -5.9318 11 1 1.6113 -1.3417 -6.4210 12 6 3.7635 -1.4499 -6.4808 13 7 4.8595 -1.3245 -5.7809 14 14 3.8360 -2.1454 -8.2130 15 1 3.3160 -1.1386 -9.1728 16 1 5.2427 -2.4760 -8.5552 17 1 3.0067 -3.3751 -8.2878 18 6 1.4062 -0.4295 -3.8579 19 6 1.3767 0.3023 -2.7082 20 6 2.0992 2.1295 1.2569 21 1 2.4824 3.1307 1.0596 22 6 3.0395 1.4051 2.2221 23 6 0.7060 2.2301 1.8811 24 16 -0.4089 3.0891 0.7366 25 6 -1.9679 3.0925 1.6639 26 8 0.0359 4.4310 0.5928 27 8 -0.5743 2.2850 -0.4233 28 1 -0.3634 -1.0267 -0.0452 29 1 -0.3634 0.4742 0.9116 30 1 -0.3633 0.5525 -0.8666 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 4.3224 1.9774 -3.0411 34 1 4.3941 0.6669 -5.1017 35 1 5.7108 -1.5928 -6.1605 36 1 0.5935 -1.1009 -4.0927 37 1 0.5400 0.2101 -2.0317 38 1 3.0993 1.9617 3.1574 39 1 2.6566 0.4038 2.4195 40 1 4.0321 1.3334 1.7775 41 1 0.3231 1.2288 2.0784 42 1 0.7661 2.7873 2.8160 43 1 -1.8294 3.6237 2.6056 44 1 -2.7393 3.5897 1.0758 45 1 -2.2720 2.0657 1.8673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270444324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:45 Heat of formation + Delta-G solvation = -78.950274 kcal Electronic energy + Delta-G solvation = -28860.377592 eV Core-core repulsion = 24970.504386 eV Total energy + Delta-G solvation = -3889.873206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40734 -39.08821 -38.09824 -37.63308 -36.81407 -35.72091 -34.01168 -31.91130 -31.35686 -31.04616 -30.29020 -28.64171 -27.65242 -24.26778 -24.06988 -22.96482 -22.07695 -20.22763 -19.81996 -19.38334 -18.39117 -17.59708 -17.57569 -17.28765 -16.99419 -16.69562 -16.07544 -15.90200 -15.50822 -14.98443 -14.68212 -14.58747 -14.34081 -14.16106 -14.11002 -13.93521 -13.79662 -13.74434 -13.47123 -13.33879 -13.20239 -13.14729 -12.94711 -12.91422 -12.79402 -12.61344 -12.34049 -12.11730 -11.96796 -11.79313 -11.55674 -11.50478 -11.22669 -11.09935 -11.02585 -10.65124 -9.73670 -9.48782 -9.25611 -8.68834 -6.44331 -0.89084 0.57957 1.16529 1.39118 1.45945 1.52003 1.93754 1.97371 2.09469 2.19714 2.74668 2.84403 3.16346 3.51607 3.67181 3.85743 4.00447 4.07768 4.08367 4.22537 4.25427 4.38436 4.44096 4.47523 4.53225 4.60535 4.74822 4.82801 4.92359 4.94941 4.98887 5.06319 5.09284 5.16806 5.24271 5.29019 5.31583 5.64327 5.69240 5.82080 5.92010 6.00938 6.05216 6.27353 6.45495 6.60319 6.83762 6.93938 7.31387 8.27032 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.003173 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.675256 B = 8821.951566 C = 9113.613449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.085 3.915 3 N -0.609 5.609 4 C 0.578 3.422 5 O -0.601 6.601 6 C -0.276 4.276 7 C -0.064 4.064 8 C -0.190 4.190 9 C 0.102 3.898 10 C -0.486 4.486 11 H 0.087 0.913 12 C 0.034 3.966 13 N -0.817 5.817 14 Si 0.989 3.011 15 H -0.262 1.262 16 H -0.268 1.268 17 H -0.254 1.254 18 C -0.244 4.244 19 C -0.054 4.054 20 C 0.136 3.864 21 H 0.078 0.922 22 C -0.146 4.146 23 C -0.612 4.612 24 S 2.368 3.632 25 C -0.634 4.634 26 O -1.001 7.001 27 O -0.956 6.956 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.291 0.709 36 H 0.114 0.886 37 H 0.152 0.848 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.179 0.821 42 H 0.182 0.818 43 H 0.154 0.846 44 H 0.130 0.870 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.853 -1.252 19.857 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.036 4.036 3 N -0.341 5.341 4 C 0.371 3.629 5 O -0.484 6.484 6 C -0.281 4.281 7 C -0.083 4.083 8 C -0.210 4.210 9 C 0.099 3.901 10 C -0.514 4.514 11 H 0.105 0.895 12 C -0.183 4.183 13 N -0.442 5.442 14 Si 0.809 3.191 15 H -0.186 1.186 16 H -0.192 1.192 17 H -0.177 1.177 18 C -0.263 4.263 19 C -0.072 4.072 20 C 0.032 3.968 21 H 0.097 0.903 22 C -0.205 4.205 23 C -0.743 4.743 24 S 2.559 3.441 25 C -0.786 4.786 26 O -0.998 6.998 27 O -0.953 6.953 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.169 0.831 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.196 0.804 42 H 0.200 0.800 43 H 0.173 0.827 44 H 0.148 0.852 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.260 -0.319 19.016 21.610 hybrid contribution 0.477 -0.154 -0.444 0.670 sum -9.783 -0.472 18.572 20.997 Atomic orbital electron populations 1.23125 0.94289 1.03339 1.04323 1.22062 0.96004 0.80956 1.04615 1.48076 1.65106 1.15501 1.05462 1.18644 0.74028 0.85735 0.84465 1.90664 1.52620 1.17946 1.87186 1.19156 1.01062 1.09295 0.98550 1.20488 0.96390 0.97133 0.94297 1.20863 1.01828 0.99994 0.98295 1.18112 0.91091 0.88734 0.92171 1.20004 0.94339 1.29887 1.07159 0.89512 1.26920 0.94155 0.94028 1.03190 1.69778 1.00540 1.35257 1.38620 0.85154 0.78609 0.79389 0.75998 1.18593 1.19240 1.17747 1.21020 1.01941 1.06560 0.96813 1.21420 0.96828 0.92155 0.96793 1.20797 0.94356 0.97637 0.84030 0.90331 1.22070 0.97686 1.02110 0.98602 1.30782 1.09048 1.17720 1.16756 1.08904 0.80504 0.75084 0.79641 1.30100 1.18627 1.14160 1.15737 1.93527 1.81905 1.37519 1.86858 1.93638 1.86215 1.68480 1.47000 0.89909 0.91134 0.88836 0.90463 0.87641 0.89500 0.88004 0.89765 0.86823 0.83095 0.88360 0.89453 0.93621 0.80355 0.80012 0.82737 0.85163 0.82050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.11 7.23 71.98 0.52 -3.59 16 2 C 0.09 2.23 5.24 86.38 0.45 2.68 16 3 N -0.61 -19.86 1.51 -801.46 -1.21 -21.07 16 4 C 0.58 26.38 6.76 86.73 0.59 26.96 16 5 O -0.60 -31.77 16.31 -3.97 -0.06 -31.83 16 6 C -0.28 -13.71 5.16 -19.93 -0.10 -13.81 16 7 C -0.06 -3.43 9.60 22.25 0.21 -3.22 16 8 C -0.19 -10.67 8.59 22.47 0.19 -10.48 16 9 C 0.10 5.58 5.53 -21.28 -0.12 5.46 16 10 C -0.49 -25.77 9.04 23.46 0.21 -25.56 16 11 H 0.09 4.34 7.88 -2.91 -0.02 4.32 16 12 C 0.03 1.67 5.22 85.35 0.45 2.11 16 13 N -0.82 -42.52 10.97 21.87 0.24 -42.28 16 14 Si 0.99 37.37 29.58 68.60 2.03 39.40 16 15 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 16 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 17 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 18 C -0.24 -11.98 9.73 22.47 0.22 -11.76 16 19 C -0.05 -2.47 7.31 22.25 0.16 -2.31 16 20 C 0.14 3.36 2.69 44.99 0.12 3.48 16 21 H 0.08 2.52 6.91 -2.39 -0.02 2.51 16 22 C -0.15 -2.51 9.15 71.98 0.66 -1.85 16 23 C -0.61 -8.49 4.66 71.98 0.34 -8.16 16 24 S 2.37 53.15 4.83 -56.49 -0.27 52.88 16 25 C -0.63 -5.42 10.62 113.37 1.20 -4.22 16 26 O -1.00 -34.60 18.10 -127.37 -2.31 -36.91 16 27 O -0.96 -29.03 11.70 -127.37 -1.49 -30.52 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 0.92 4.12 -2.39 -0.01 0.91 16 30 H 0.09 2.72 3.49 -2.93 -0.01 2.71 16 31 H 0.08 2.54 5.00 -2.39 -0.01 2.53 16 32 H 0.11 1.90 6.48 -2.39 -0.02 1.89 16 33 H 0.09 4.60 8.06 -2.91 -0.02 4.58 16 34 H 0.10 5.91 6.33 -2.91 -0.02 5.89 16 35 H 0.29 13.70 8.29 -92.71 -0.77 12.93 16 36 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 37 H 0.15 5.87 3.41 -2.91 -0.01 5.86 16 38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.08 6.72 -2.39 -0.02 1.06 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.18 1.11 5.51 -2.39 -0.01 1.10 16 42 H 0.18 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.16 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -86.49 358.09 3.05 -83.43 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 1.02 Total: 31.15 kcal Atomic # 6 Polarization: -49.35 SS G_CDS: 5.10 Total: -44.25 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.97 Total: -63.35 kcal Atomic # 8 Polarization: -95.40 SS G_CDS: -3.86 Total: -99.26 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Atomic # 16 Polarization: 53.15 SS G_CDS: -0.27 Total: 52.88 kcal Total: -86.49 3.05 -83.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270444324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.481 kcal (2) G-P(sol) polarization free energy of solvation -86.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds