Wall clock time and date at job start Tue Mar 31 2020 22:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47054 * 2 1 4 4 C 1.34782 * 119.99868 * 262.50340 * 3 2 1 5 5 O 1.21585 * 119.99642 * 175.14543 * 4 3 2 6 6 C 1.47637 * 119.99708 * 355.13741 * 4 3 2 7 7 C 1.40015 * 119.89442 * 229.87730 * 6 4 3 8 8 C 1.36321 * 120.10347 * 179.72180 * 7 6 4 9 9 C 1.40883 * 119.89203 * 0.57939 * 8 7 6 10 10 C 1.41115 * 120.10364 * 179.67360 * 9 8 7 11 11 H 1.08004 * 119.99831 * 208.19813 * 10 9 8 12 12 C 1.40227 * 119.99958 * 28.20095 * 10 9 8 13 13 N 1.30654 * 119.99780 * 12.33089 * 12 10 9 14 14 Si 1.86795 * 120.00089 * 192.32799 * 12 10 9 15 15 H 1.48507 * 109.46909 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47022 * 119.99634 * 14 12 10 17 17 H 1.48493 * 109.47196 * 239.99904 * 14 12 10 18 18 C 1.40883 * 119.79657 * 359.69875 * 9 8 7 19 19 C 1.36320 * 119.88869 * 359.97438 * 18 9 8 20 20 C 1.46503 * 119.99912 * 82.50778 * 3 2 1 21 21 H 1.09001 * 109.46779 * 179.97438 * 20 3 2 22 22 C 1.52997 * 109.47096 * 299.99161 * 20 3 2 23 23 C 1.52990 * 109.47348 * 59.99720 * 20 3 2 24 24 S 1.81406 * 109.47241 * 64.99941 * 23 20 3 25 25 C 1.81399 * 101.92318 * 180.02562 * 24 23 20 26 26 O 1.42099 * 108.57576 * 294.48529 * 24 23 20 27 27 O 1.42097 * 108.57824 * 65.51505 * 24 23 20 28 28 H 1.09000 * 109.47557 * 162.38720 * 1 2 3 29 29 H 1.08994 * 109.47613 * 282.39335 * 1 2 3 30 30 H 1.09005 * 109.46994 * 42.39089 * 1 2 3 31 31 H 1.09001 * 109.46775 * 239.99518 * 2 1 3 32 32 H 1.09006 * 109.46712 * 119.99929 * 2 1 3 33 33 H 1.07996 * 119.94683 * 0.02562 * 7 6 4 34 34 H 1.07995 * 120.05366 * 180.25670 * 8 7 6 35 35 H 0.96996 * 119.99605 * 179.97438 * 13 12 10 36 36 H 1.08000 * 120.05839 * 179.97438 * 18 9 8 37 37 H 1.08003 * 119.94743 * 179.97438 * 19 18 9 38 38 H 1.08999 * 109.47400 * 300.00589 * 22 20 3 39 39 H 1.08994 * 109.47131 * 180.02562 * 22 20 3 40 40 H 1.09001 * 109.46928 * 60.00555 * 22 20 3 41 41 H 1.08999 * 109.47141 * 184.99851 * 23 20 3 42 42 H 1.08995 * 109.47298 * 305.00252 * 23 20 3 43 43 H 1.09003 * 109.47073 * 59.99720 * 25 24 23 44 44 H 1.08992 * 109.47663 * 179.97438 * 25 24 23 45 45 H 1.09004 * 109.47112 * 300.00074 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3865 1.9658 -1.1573 5 8 2.7076 3.1384 -1.1707 6 6 2.4000 1.1821 -2.4085 7 6 3.5314 1.2035 -3.2330 8 6 3.5507 0.4771 -4.3864 9 6 2.4252 -0.2863 -4.7543 10 6 2.4377 -1.0345 -5.9507 11 1 1.5131 -1.2364 -6.4710 12 6 3.6507 -1.5157 -6.4640 13 7 4.7294 -1.4859 -5.7275 14 14 3.7242 -2.1994 -8.2008 15 1 2.3771 -2.1211 -8.8210 16 1 4.6861 -1.4041 -9.0055 17 1 4.1678 -3.6158 -8.1568 18 6 1.2869 -0.3000 -3.9243 19 6 1.2795 0.4243 -2.7695 20 6 2.1065 2.1269 1.2579 21 1 2.4886 3.1285 1.0605 22 6 0.7169 2.2263 1.8904 23 6 3.0523 1.4005 2.2163 24 16 4.7325 1.4125 1.5325 25 6 5.6620 0.5163 2.8066 26 8 4.7412 0.6406 0.3395 27 8 5.1959 2.7552 1.4937 28 1 -0.3634 -0.9795 -0.3109 29 1 -0.3634 0.2205 1.0036 30 1 -0.3633 0.7590 -0.6929 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 4.3920 1.7925 -2.9524 34 1 4.4253 0.4909 -5.0197 35 1 5.5683 -1.8191 -6.0824 36 1 0.4216 -0.8834 -4.2024 37 1 0.4072 0.4148 -2.1327 38 1 0.0431 2.7438 1.2076 39 1 0.7824 2.7815 2.8260 40 1 0.3351 1.2246 2.0879 41 1 3.0495 1.9058 3.1821 42 1 2.7194 0.3705 2.3441 43 1 5.2521 -0.4877 2.9167 44 1 6.7097 0.4505 2.5134 45 1 5.5825 1.0472 3.7553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270444326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:50 Heat of formation + Delta-G solvation = -73.068745 kcal Electronic energy + Delta-G solvation = -28674.387619 eV Core-core repulsion = 24784.769455 eV Total energy + Delta-G solvation = -3889.618164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.85206 -37.29848 -36.85241 -36.23907 -35.83197 -33.92059 -32.82239 -30.20352 -29.93158 -29.58200 -29.28575 -27.85814 -25.81759 -23.11901 -22.57230 -21.07867 -20.53782 -18.92010 -18.63712 -17.47082 -16.98532 -16.66709 -16.28140 -16.00938 -15.63111 -15.28970 -14.71991 -14.26716 -14.00538 -13.65448 -13.53556 -13.48411 -13.33644 -13.03097 -12.85486 -12.68990 -12.58229 -12.50008 -12.16556 -12.06004 -11.89893 -11.82295 -11.70618 -11.58808 -11.29175 -11.17801 -11.12057 -10.95353 -10.86705 -10.60111 -10.44210 -10.39346 -9.86317 -9.39189 -9.26075 -8.94453 -8.41980 -7.54357 -7.34226 -6.81369 -4.45748 -0.05133 2.46749 2.74021 3.00948 3.04743 3.09712 3.13472 3.29872 3.60354 3.75072 3.87929 3.97445 4.39484 4.53604 4.61976 4.62755 4.88356 4.99754 5.11933 5.22595 5.29475 5.42573 5.46496 5.51082 5.56350 5.66418 5.74547 5.83915 6.02464 6.11260 6.14823 6.27477 6.39206 6.47208 6.89144 6.96629 6.99487 7.18520 7.26190 7.59242 7.69850 7.83706 8.00104 8.10296 8.22987 8.58435 8.79952 8.88903 8.93325 10.10876 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.003571 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.986934 B = 7838.338893 C = 8734.503890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.102 3.898 3 N -0.619 5.619 4 C 0.586 3.414 5 O -0.558 6.558 6 C -0.260 4.260 7 C -0.040 4.040 8 C -0.171 4.171 9 C 0.126 3.874 10 C -0.453 4.453 11 H 0.081 0.919 12 C 0.073 3.927 13 N -0.783 5.783 14 Si 0.912 3.088 15 H -0.260 1.260 16 H -0.271 1.271 17 H -0.273 1.273 18 C -0.231 4.231 19 C -0.068 4.068 20 C 0.150 3.850 21 H 0.113 0.887 22 C -0.155 4.155 23 C -0.629 4.629 24 S 2.412 3.588 25 C -0.665 4.665 26 O -0.906 6.906 27 O -0.934 6.934 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.283 0.717 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 -0.849 17.471 17.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.021 4.021 3 N -0.353 5.353 4 C 0.380 3.620 5 O -0.437 6.437 6 C -0.264 4.264 7 C -0.060 4.060 8 C -0.190 4.190 9 C 0.123 3.877 10 C -0.482 4.482 11 H 0.099 0.901 12 C -0.146 4.146 13 N -0.407 5.407 14 Si 0.736 3.264 15 H -0.183 1.183 16 H -0.196 1.196 17 H -0.199 1.199 18 C -0.250 4.250 19 C -0.087 4.087 20 C 0.044 3.956 21 H 0.131 0.869 22 C -0.214 4.214 23 C -0.758 4.758 24 S 2.591 3.409 25 C -0.813 4.813 26 O -0.903 6.903 27 O -0.931 6.931 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.139 0.861 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.315 0.054 16.669 16.829 hybrid contribution -0.085 -0.954 0.314 1.008 sum -2.400 -0.900 16.983 17.175 Atomic orbital electron populations 1.22579 0.96556 1.02619 1.01862 1.21651 0.93659 0.82606 1.04174 1.48154 1.67095 1.14318 1.05784 1.18915 0.73378 0.86237 0.83464 1.90683 1.49672 1.16707 1.86627 1.18749 0.98891 1.11129 0.97629 1.20356 0.95122 0.96721 0.93752 1.21009 1.00723 0.99478 0.97811 1.17752 0.90714 0.88105 0.91123 1.19758 0.93861 1.28435 1.06129 0.90096 1.26023 0.95033 0.94388 0.99157 1.69748 1.00955 1.33752 1.36243 0.86202 0.79656 0.78819 0.81731 1.18316 1.19607 1.19873 1.20688 1.00389 1.06882 0.97059 1.20679 0.95985 0.95178 0.96813 1.20496 0.95433 0.96613 0.83021 0.86924 1.22269 0.95701 1.02759 1.00653 1.30807 1.23008 1.10740 1.11273 1.08294 0.78395 0.76587 0.77597 1.30396 1.15989 1.15302 1.19582 1.93707 1.85219 1.71664 1.39677 1.93608 1.79086 1.34063 1.86340 0.91617 0.92438 0.91545 0.87334 0.91915 0.88895 0.86079 0.90591 0.88648 0.87987 0.91482 0.91810 0.91292 0.84432 0.84711 0.85522 0.85388 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 8.16 37.16 0.30 -1.80 16 2 C 0.10 1.45 5.25 -4.04 -0.02 1.43 16 3 N -0.62 -10.28 1.48 -167.29 -0.25 -10.53 16 4 C 0.59 12.82 6.68 -12.42 -0.08 12.74 16 5 O -0.56 -13.78 16.37 5.29 0.09 -13.69 16 6 C -0.26 -6.16 4.91 -104.73 -0.51 -6.67 16 7 C -0.04 -1.04 9.66 -39.61 -0.38 -1.42 16 8 C -0.17 -4.56 8.60 -39.27 -0.34 -4.90 16 9 C 0.13 3.31 5.55 -106.80 -0.59 2.72 16 10 C -0.45 -11.68 9.05 -37.74 -0.34 -12.03 16 11 H 0.08 1.99 7.88 -52.48 -0.41 1.58 16 12 C 0.07 1.80 5.23 -17.31 -0.09 1.71 16 13 N -0.78 -19.97 10.87 55.56 0.60 -19.36 16 14 Si 0.91 18.21 29.58 -169.99 -5.03 13.18 16 15 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 16 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 17 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 18 C -0.23 -5.45 9.73 -39.27 -0.38 -5.84 16 19 C -0.07 -1.49 7.45 -39.61 -0.30 -1.78 16 20 C 0.15 1.99 2.64 -67.94 -0.18 1.81 16 21 H 0.11 1.76 6.91 -51.93 -0.36 1.40 16 22 C -0.15 -1.55 8.39 37.16 0.31 -1.24 16 23 C -0.63 -5.80 5.21 37.15 0.19 -5.61 16 24 S 2.41 30.50 5.28 -107.50 -0.57 29.94 16 25 C -0.66 -4.88 10.62 101.05 1.07 -3.81 16 26 O -0.91 -15.94 16.74 -57.83 -0.97 -16.91 16 27 O -0.93 -15.60 18.10 -57.83 -1.05 -16.65 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.54 5.55 -51.93 -0.29 0.26 16 30 H 0.07 0.89 6.47 -51.93 -0.34 0.55 16 31 H 0.11 1.89 5.36 -51.93 -0.28 1.61 16 32 H 0.06 0.69 6.38 -51.93 -0.33 0.36 16 33 H 0.09 2.39 8.06 -52.49 -0.42 1.96 16 34 H 0.12 3.32 6.22 -52.49 -0.33 3.00 16 35 H 0.28 6.54 8.29 -40.82 -0.34 6.20 16 36 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 37 H 0.10 1.89 4.21 -52.48 -0.22 1.67 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.59 5.41 -51.93 -0.28 0.31 16 41 H 0.14 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.13 0.89 6.51 -51.93 -0.34 0.55 16 43 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.12 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -35.70 369.17 -9.05 -44.75 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.11 Total: 8.39 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -1.34 Total: -24.68 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.36 Total: -29.89 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -1.93 Total: -47.25 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Atomic # 16 Polarization: 30.50 SS G_CDS: -0.57 Total: 29.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.70 -9.05 -44.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270444326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.317 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds