Wall clock time and date at job start Tue Mar 31 2020 22:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47054 * 2 1 4 4 C 1.34782 * 119.99868 * 262.50340 * 3 2 1 5 5 O 1.21585 * 119.99642 * 175.14543 * 4 3 2 6 6 C 1.47637 * 119.99708 * 355.13741 * 4 3 2 7 7 C 1.40015 * 119.89442 * 229.87730 * 6 4 3 8 8 C 1.36321 * 120.10347 * 179.72180 * 7 6 4 9 9 C 1.40883 * 119.89203 * 0.57939 * 8 7 6 10 10 C 1.41115 * 120.10364 * 179.67360 * 9 8 7 11 11 H 1.08004 * 119.99831 * 208.19813 * 10 9 8 12 12 C 1.40227 * 119.99958 * 28.20095 * 10 9 8 13 13 N 1.30654 * 119.99780 * 12.33089 * 12 10 9 14 14 Si 1.86795 * 120.00089 * 192.32799 * 12 10 9 15 15 H 1.48507 * 109.46909 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47022 * 119.99634 * 14 12 10 17 17 H 1.48493 * 109.47196 * 239.99904 * 14 12 10 18 18 C 1.40883 * 119.79657 * 359.69875 * 9 8 7 19 19 C 1.36320 * 119.88869 * 359.97438 * 18 9 8 20 20 C 1.46503 * 119.99912 * 82.50778 * 3 2 1 21 21 H 1.09001 * 109.46779 * 179.97438 * 20 3 2 22 22 C 1.52997 * 109.47096 * 299.99161 * 20 3 2 23 23 C 1.52990 * 109.47348 * 59.99720 * 20 3 2 24 24 S 1.81406 * 109.47241 * 64.99941 * 23 20 3 25 25 C 1.81399 * 101.92318 * 180.02562 * 24 23 20 26 26 O 1.42099 * 108.57576 * 294.48529 * 24 23 20 27 27 O 1.42097 * 108.57824 * 65.51505 * 24 23 20 28 28 H 1.09000 * 109.47557 * 162.38720 * 1 2 3 29 29 H 1.08994 * 109.47613 * 282.39335 * 1 2 3 30 30 H 1.09005 * 109.46994 * 42.39089 * 1 2 3 31 31 H 1.09001 * 109.46775 * 239.99518 * 2 1 3 32 32 H 1.09006 * 109.46712 * 119.99929 * 2 1 3 33 33 H 1.07996 * 119.94683 * 0.02562 * 7 6 4 34 34 H 1.07995 * 120.05366 * 180.25670 * 8 7 6 35 35 H 0.96996 * 119.99605 * 179.97438 * 13 12 10 36 36 H 1.08000 * 120.05839 * 179.97438 * 18 9 8 37 37 H 1.08003 * 119.94743 * 179.97438 * 19 18 9 38 38 H 1.08999 * 109.47400 * 300.00589 * 22 20 3 39 39 H 1.08994 * 109.47131 * 180.02562 * 22 20 3 40 40 H 1.09001 * 109.46928 * 60.00555 * 22 20 3 41 41 H 1.08999 * 109.47141 * 184.99851 * 23 20 3 42 42 H 1.08995 * 109.47298 * 305.00252 * 23 20 3 43 43 H 1.09003 * 109.47073 * 59.99720 * 25 24 23 44 44 H 1.08992 * 109.47663 * 179.97438 * 25 24 23 45 45 H 1.09004 * 109.47112 * 300.00074 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3865 1.9658 -1.1573 5 8 2.7076 3.1384 -1.1707 6 6 2.4000 1.1821 -2.4085 7 6 3.5314 1.2035 -3.2330 8 6 3.5507 0.4771 -4.3864 9 6 2.4252 -0.2863 -4.7543 10 6 2.4377 -1.0345 -5.9507 11 1 1.5131 -1.2364 -6.4710 12 6 3.6507 -1.5157 -6.4640 13 7 4.7294 -1.4859 -5.7275 14 14 3.7242 -2.1994 -8.2008 15 1 2.3771 -2.1211 -8.8210 16 1 4.6861 -1.4041 -9.0055 17 1 4.1678 -3.6158 -8.1568 18 6 1.2869 -0.3000 -3.9243 19 6 1.2795 0.4243 -2.7695 20 6 2.1065 2.1269 1.2579 21 1 2.4886 3.1285 1.0605 22 6 0.7169 2.2263 1.8904 23 6 3.0523 1.4005 2.2163 24 16 4.7325 1.4125 1.5325 25 6 5.6620 0.5163 2.8066 26 8 4.7412 0.6406 0.3395 27 8 5.1959 2.7552 1.4937 28 1 -0.3634 -0.9795 -0.3109 29 1 -0.3634 0.2205 1.0036 30 1 -0.3633 0.7590 -0.6929 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 4.3920 1.7925 -2.9524 34 1 4.4253 0.4909 -5.0197 35 1 5.5683 -1.8191 -6.0824 36 1 0.4216 -0.8834 -4.2024 37 1 0.4072 0.4148 -2.1327 38 1 0.0431 2.7438 1.2076 39 1 0.7824 2.7815 2.8260 40 1 0.3351 1.2246 2.0879 41 1 3.0495 1.9058 3.1821 42 1 2.7194 0.3705 2.3441 43 1 5.2521 -0.4877 2.9167 44 1 6.7097 0.4505 2.5134 45 1 5.5825 1.0472 3.7553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270444326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:49 Heat of formation + Delta-G solvation = -98.844523 kcal Electronic energy + Delta-G solvation = -28675.505341 eV Core-core repulsion = 24784.769455 eV Total energy + Delta-G solvation = -3890.735886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36282 -39.09627 -37.95498 -37.73469 -36.91787 -35.71452 -34.05230 -31.91604 -31.22819 -31.06986 -30.44638 -28.64095 -27.67137 -24.31805 -24.06033 -22.94745 -22.10587 -20.24412 -19.69820 -19.36544 -18.44481 -17.77270 -17.52562 -17.13178 -17.04409 -16.72244 -16.10950 -15.89471 -15.57055 -15.06254 -14.76798 -14.41387 -14.26984 -14.16422 -13.95345 -13.93236 -13.89194 -13.63666 -13.56393 -13.52057 -13.22242 -13.11923 -13.02257 -12.94538 -12.80090 -12.68763 -12.50271 -12.24725 -12.13903 -11.87791 -11.73501 -11.52072 -11.28301 -11.26914 -11.11649 -10.67848 -9.76493 -9.50336 -9.28122 -8.67780 -6.43540 -0.93404 0.60910 1.15371 1.38968 1.43559 1.55655 1.84535 1.91913 2.10341 2.19589 2.73055 2.80723 3.12115 3.50432 3.68301 3.80647 4.00821 4.05046 4.07857 4.20480 4.23381 4.32145 4.37478 4.44828 4.50916 4.57125 4.68590 4.81861 4.88473 4.90661 4.97617 5.04967 5.07815 5.17098 5.21932 5.29338 5.31698 5.51190 5.63684 5.70527 5.80229 6.01809 6.04983 6.24766 6.43211 6.61194 6.83942 6.94366 7.28011 8.27653 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.003571 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.986934 B = 7838.338893 C = 8734.503890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.090 3.910 3 N -0.606 5.606 4 C 0.580 3.420 5 O -0.602 6.602 6 C -0.268 4.268 7 C -0.060 4.060 8 C -0.192 4.192 9 C 0.099 3.901 10 C -0.482 4.482 11 H 0.089 0.911 12 C 0.031 3.969 13 N -0.819 5.819 14 Si 0.990 3.010 15 H -0.252 1.252 16 H -0.268 1.268 17 H -0.263 1.263 18 C -0.237 4.237 19 C -0.052 4.052 20 C 0.132 3.868 21 H 0.078 0.922 22 C -0.148 4.148 23 C -0.604 4.604 24 S 2.372 3.628 25 C -0.631 4.631 26 O -0.978 6.978 27 O -0.998 6.998 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.291 0.709 36 H 0.118 0.882 37 H 0.141 0.859 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.191 0.809 42 H 0.175 0.825 43 H 0.159 0.841 44 H 0.127 0.873 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 -3.158 20.944 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.032 4.032 3 N -0.338 5.338 4 C 0.373 3.627 5 O -0.485 6.485 6 C -0.272 4.272 7 C -0.079 4.079 8 C -0.212 4.212 9 C 0.096 3.904 10 C -0.510 4.510 11 H 0.107 0.893 12 C -0.185 4.185 13 N -0.444 5.444 14 Si 0.810 3.190 15 H -0.175 1.175 16 H -0.193 1.193 17 H -0.187 1.187 18 C -0.257 4.257 19 C -0.070 4.070 20 C 0.028 3.972 21 H 0.096 0.904 22 C -0.206 4.206 23 C -0.736 4.736 24 S 2.561 3.439 25 C -0.784 4.784 26 O -0.975 6.975 27 O -0.995 6.995 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.208 0.792 42 H 0.193 0.807 43 H 0.177 0.823 44 H 0.146 0.854 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.682 -2.255 20.147 20.806 hybrid contribution 0.660 -0.241 -0.511 0.869 sum -4.022 -2.497 19.636 20.198 Atomic orbital electron populations 1.22538 0.94020 1.02923 1.03576 1.21917 0.95681 0.80988 1.04569 1.48079 1.65079 1.15183 1.05439 1.18668 0.73814 0.85530 0.84695 1.90648 1.51962 1.18438 1.87469 1.19072 0.98514 1.11057 0.98520 1.20377 0.95843 0.97160 0.94527 1.20890 1.00941 1.01090 0.98257 1.18091 0.91373 0.88571 0.92317 1.20062 0.95003 1.29276 1.06696 0.89276 1.26981 0.94091 0.94153 1.03312 1.69828 1.01791 1.34380 1.38373 0.85038 0.79874 0.78286 0.75794 1.17484 1.19333 1.18726 1.20969 1.00266 1.07302 0.97115 1.20990 0.96312 0.93316 0.96403 1.20866 0.98755 0.95236 0.82338 0.90410 1.22259 0.92526 1.04644 1.01199 1.30607 1.17864 1.13377 1.11743 1.08727 0.80726 0.75628 0.78804 1.30068 1.14521 1.16067 1.17698 1.93640 1.86764 1.72208 1.44865 1.93533 1.80769 1.37332 1.87868 0.90080 0.89004 0.93451 0.91032 0.87702 0.90823 0.88086 0.89857 0.86436 0.84152 0.93128 0.88636 0.88705 0.79181 0.80689 0.82272 0.85447 0.82036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.40 8.16 71.98 0.59 -2.82 16 2 C 0.09 2.36 5.25 86.38 0.45 2.81 16 3 N -0.61 -19.78 1.48 -801.45 -1.19 -20.96 16 4 C 0.58 26.69 6.68 86.72 0.58 27.27 16 5 O -0.60 -32.01 16.37 -3.98 -0.07 -32.08 16 6 C -0.27 -13.41 4.91 -19.94 -0.10 -13.51 16 7 C -0.06 -3.37 9.66 22.25 0.21 -3.15 16 8 C -0.19 -11.12 8.60 22.47 0.19 -10.93 16 9 C 0.10 5.47 5.55 -21.28 -0.12 5.36 16 10 C -0.48 -25.66 9.05 23.46 0.21 -25.45 16 11 H 0.09 4.44 7.88 -2.91 -0.02 4.42 16 12 C 0.03 1.55 5.23 85.35 0.45 2.00 16 13 N -0.82 -43.79 10.87 21.87 0.24 -43.56 16 14 Si 0.99 37.75 29.58 68.60 2.03 39.78 16 15 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16 16 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 17 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 18 C -0.24 -11.43 9.73 22.47 0.22 -11.21 16 19 C -0.05 -2.31 7.45 22.25 0.17 -2.15 16 20 C 0.13 3.24 2.64 44.99 0.12 3.36 16 21 H 0.08 2.50 6.91 -2.39 -0.02 2.48 16 22 C -0.15 -2.30 8.39 71.98 0.60 -1.69 16 23 C -0.60 -8.64 5.21 71.98 0.37 -8.27 16 24 S 2.37 59.23 5.28 -56.49 -0.30 58.93 16 25 C -0.63 -6.82 10.62 113.37 1.20 -5.62 16 26 O -0.98 -36.41 16.74 -127.37 -2.13 -38.55 16 27 O -1.00 -35.36 18.10 -127.37 -2.31 -37.66 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.20 5.55 -2.39 -0.01 1.18 16 30 H 0.05 1.13 6.47 -2.38 -0.02 1.12 16 31 H 0.07 2.46 5.36 -2.39 -0.01 2.44 16 32 H 0.10 1.83 6.38 -2.38 -0.02 1.82 16 33 H 0.07 4.28 8.06 -2.91 -0.02 4.26 16 34 H 0.10 6.10 6.22 -2.91 -0.02 6.08 16 35 H 0.29 14.00 8.29 -92.71 -0.77 13.23 16 36 H 0.12 5.05 8.06 -2.91 -0.02 5.02 16 37 H 0.14 5.05 4.21 -2.91 -0.01 5.04 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 0.98 5.41 -2.39 -0.01 0.97 16 41 H 0.19 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.18 1.14 6.51 -2.39 -0.02 1.12 16 43 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.16 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -91.05 369.17 2.45 -88.60 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 1.01 Total: 29.49 kcal Atomic # 6 Polarization: -49.16 SS G_CDS: 5.16 Total: -44.00 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -0.95 Total: -64.52 kcal Atomic # 8 Polarization: -103.78 SS G_CDS: -4.50 Total: -108.29 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Atomic # 16 Polarization: 59.23 SS G_CDS: -0.30 Total: 58.93 kcal Total: -91.05 2.45 -88.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270444326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.242 kcal (2) G-P(sol) polarization free energy of solvation -91.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds