Wall clock time and date at job start Tue Mar 31 2020 23:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36004 * 116.99903 * 2 1 4 4 C 1.38722 * 120.02101 * 359.97438 * 3 2 1 5 5 C 1.38112 * 120.24044 * 180.76539 * 4 3 2 6 6 C 1.39453 * 119.68784 * 359.89085 * 5 4 3 7 7 C 1.37936 * 119.70941 * 358.88138 * 6 5 4 8 8 C 1.37850 * 120.77373 * 1.73118 * 7 6 5 9 9 C 1.51920 * 119.08518 * 182.22370 * 7 6 5 10 10 C 1.52516 * 109.18021 * 291.77374 * 9 7 6 11 11 C 1.52208 * 111.23356 * 85.62326 * 10 9 7 12 12 C 1.51052 * 113.62827 * 290.10237 * 11 10 9 13 13 N 1.39875 * 119.75123 * 178.16528 * 6 5 4 14 14 S 1.65600 * 121.02168 * 69.05167 * 13 6 5 15 15 O 1.42101 * 104.27882 * 153.65147 * 14 13 6 16 16 O 1.42102 * 104.27187 * 25.79522 * 14 13 6 17 17 C 1.81399 * 104.45301 * 269.72485 * 14 13 6 18 18 C 1.52996 * 109.47218 * 179.97438 * 17 14 13 19 19 C 1.50696 * 109.47142 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00056 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00096 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99914 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99841 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46821 * 90.00479 * 23 21 19 25 25 H 1.48504 * 109.47204 * 210.00370 * 23 21 19 26 26 H 1.48504 * 109.47330 * 330.00494 * 23 21 19 27 27 H 1.09001 * 109.46799 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47414 * 300.00072 * 1 2 3 29 29 H 1.08997 * 109.46967 * 60.00484 * 1 2 3 30 30 H 1.08001 * 119.88289 * 0.78737 * 4 3 2 31 31 H 1.08003 * 120.10626 * 179.97438 * 5 4 3 32 32 H 1.07993 * 120.19376 * 178.87669 * 8 7 6 33 33 H 1.08997 * 109.52384 * 171.85579 * 9 7 6 34 34 H 1.09008 * 109.56658 * 51.70858 * 9 7 6 35 35 H 1.09000 * 109.12775 * 325.17750 * 10 9 7 36 36 H 1.08994 * 109.12840 * 206.07385 * 10 9 7 37 37 H 1.09000 * 108.65691 * 169.03174 * 11 10 9 38 38 H 1.08999 * 108.54841 * 51.09631 * 11 10 9 39 39 H 1.09004 * 109.33402 * 303.78594 * 12 11 10 40 40 H 1.08995 * 109.33417 * 184.29412 * 12 11 10 41 41 H 1.09001 * 109.46838 * 300.00058 * 17 14 13 42 42 H 1.08998 * 109.46934 * 59.99858 * 17 14 13 43 43 H 1.09004 * 109.47227 * 300.00383 * 18 17 14 44 44 H 1.09001 * 109.46834 * 59.99744 * 18 17 14 45 45 H 0.97002 * 119.99491 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2913 2.3755 -0.0005 5 6 1.9135 3.6084 -0.0165 6 6 3.3062 3.6791 -0.0298 7 6 4.0499 2.5178 -0.0035 8 6 3.4330 1.2850 0.0001 9 6 5.5658 2.6122 0.0331 10 6 6.0655 3.1674 -1.2966 11 6 6.0497 4.6894 -1.2993 12 6 4.6598 5.2805 -1.3178 13 7 3.9374 4.9262 -0.0848 14 16 3.8796 5.9694 1.2000 15 8 5.0541 6.7577 1.0644 16 8 3.6895 5.1260 2.3278 17 6 2.3999 6.9750 0.9006 18 6 2.2348 7.9895 2.0338 19 6 1.0052 8.8245 1.7853 20 1 0.4020 8.6494 0.9068 21 6 0.6508 9.8128 2.6791 22 7 -0.4221 10.5418 2.4620 23 14 1.6945 10.1162 4.1983 24 1 2.7432 11.1202 3.8859 25 1 0.8340 10.6247 5.2966 26 1 2.3361 8.8451 4.6201 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 0.2130 2.3172 0.0119 31 1 1.3235 4.5130 -0.0173 32 1 4.0246 0.3816 0.0025 33 1 5.9887 1.6209 0.1960 34 1 5.8708 3.2757 0.8425 35 1 5.4249 2.8023 -2.0994 36 1 7.0844 2.8205 -1.4681 37 1 6.5902 5.0422 -2.1776 38 1 6.5670 5.0431 -0.4074 39 1 4.1147 4.8939 -2.1790 40 1 4.7300 6.3654 -1.3957 41 1 2.5049 7.5025 -0.0475 42 1 1.5231 6.3286 0.8616 43 1 2.1298 7.4617 2.9817 44 1 3.1116 8.6359 2.0733 45 1 -0.6715 11.2368 3.0910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270782187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:33 Heat of formation + Delta-G solvation = -87.684168 kcal Electronic energy + Delta-G solvation = -28352.762688 eV Core-core repulsion = 24462.510751 eV Total energy + Delta-G solvation = -3890.251937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.60334 -38.91534 -36.92064 -35.96429 -35.56962 -34.37232 -33.98617 -31.55721 -31.45216 -30.26907 -27.53252 -26.79280 -26.02005 -24.60297 -22.92111 -21.58410 -21.04178 -20.57260 -18.86633 -18.00129 -17.74359 -17.11239 -17.00140 -16.20268 -15.88230 -15.51940 -15.29310 -14.99287 -14.60554 -14.35798 -14.07875 -13.84559 -13.67688 -13.58764 -13.20367 -13.09683 -12.84880 -12.66647 -12.53744 -12.16634 -11.93839 -11.85732 -11.74586 -11.67902 -11.35215 -11.27117 -11.22046 -11.16250 -10.79386 -10.75318 -10.70868 -10.46711 -10.19846 -9.84122 -9.50731 -9.15992 -8.94189 -8.68750 -8.06597 -6.19202 -4.20653 0.51608 1.21699 1.25540 2.79716 3.09070 3.24693 3.32174 3.36578 3.54010 4.12276 4.33685 4.41959 4.52706 4.58728 4.67938 4.81667 4.87329 4.92649 4.95899 4.99977 5.06545 5.12738 5.20418 5.27729 5.35776 5.39699 5.46714 5.49179 5.54199 5.57936 5.73984 5.81113 5.90357 5.92481 5.97977 6.09653 6.17636 6.22191 6.25859 6.41267 6.51791 6.77070 6.85848 6.91614 7.25651 7.51428 8.33588 8.81471 9.40437 10.93092 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012536 B = 0.003898 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.000986 B = 7181.704763 C = 8686.148138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.125 3.875 4 C -0.195 4.195 5 C -0.088 4.088 6 C 0.125 3.875 7 C -0.039 4.039 8 C -0.138 4.138 9 C -0.080 4.080 10 C -0.111 4.111 11 C -0.144 4.144 12 C 0.127 3.873 13 N -0.953 5.953 14 S 2.579 3.421 15 O -0.957 6.957 16 O -0.951 6.951 17 C -0.583 4.583 18 C -0.006 4.006 19 C -0.519 4.519 20 H 0.078 0.922 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.868 3.132 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.262 1.262 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.032 0.968 44 H 0.028 0.972 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.606 -19.803 -10.018 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.214 4.214 5 C -0.108 4.108 6 C 0.031 3.969 7 C -0.042 4.042 8 C -0.158 4.158 9 C -0.117 4.117 10 C -0.148 4.148 11 C -0.183 4.183 12 C 0.004 3.996 13 N -0.782 5.782 14 S 2.679 3.321 15 O -0.947 6.947 16 O -0.942 6.942 17 C -0.716 4.716 18 C -0.046 4.046 19 C -0.558 4.558 20 H 0.096 0.904 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.694 3.306 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.186 1.186 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.051 0.949 44 H 0.046 0.954 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.269 -19.776 -9.253 23.347 hybrid contribution -0.538 0.634 0.421 0.932 sum 7.731 -19.142 -8.832 22.455 Atomic orbital electron populations 1.23071 0.78338 1.03854 1.01649 1.86072 1.21432 1.26849 1.88839 1.19019 0.92202 0.84109 0.96708 1.21069 1.00239 0.91636 1.08467 1.21424 0.93346 0.98188 0.97864 1.16839 0.90223 0.84669 1.05160 1.19727 0.96122 0.91361 0.97014 1.20083 0.91186 0.97443 1.07047 1.20779 0.90192 1.02071 0.98678 1.21220 1.01198 0.95404 0.96983 1.21526 0.97420 0.95760 1.03562 1.21098 0.92124 1.00535 0.85864 1.55854 1.65028 1.25770 1.31577 1.06165 0.77955 0.74651 0.73284 1.93551 1.45031 1.70758 1.85398 1.93569 1.87436 1.65154 1.48012 1.30399 1.17825 1.12884 1.10464 1.19416 0.99935 0.93571 0.91646 1.20824 1.08243 1.16482 1.10293 0.90372 1.24973 0.94913 0.95283 0.97836 1.69878 1.24742 1.21537 1.37100 0.86949 0.80893 0.79595 0.83195 1.19593 1.20662 1.18621 0.88334 0.92381 0.92564 0.84933 0.84901 0.84825 0.90677 0.90451 0.91668 0.91332 0.90641 0.90895 0.90354 0.89244 0.85473 0.85695 0.94941 0.95369 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.46 10.50 -19.75 -0.21 -3.67 16 3 C 0.13 1.50 6.69 -39.18 -0.26 1.24 16 4 C -0.19 -2.31 9.03 -39.45 -0.36 -2.67 16 5 C -0.09 -1.16 9.92 -39.18 -0.39 -1.55 16 6 C 0.12 1.73 4.52 -83.85 -0.38 1.35 16 7 C -0.04 -0.50 5.09 -104.27 -0.53 -1.03 16 8 C -0.14 -1.63 9.63 -39.50 -0.38 -2.01 16 9 C -0.08 -0.88 5.49 -27.53 -0.15 -1.03 16 10 C -0.11 -1.02 5.60 -27.38 -0.15 -1.17 16 11 C -0.14 -1.47 5.51 -28.12 -0.15 -1.63 16 12 C 0.13 1.43 5.54 -4.62 -0.03 1.41 16 13 N -0.95 -13.42 2.53 -59.18 -0.15 -13.57 16 14 S 2.58 46.19 5.34 -107.50 -0.57 45.62 16 15 O -0.96 -18.69 17.06 -57.54 -0.98 -19.67 16 16 O -0.95 -19.72 17.29 -57.54 -0.99 -20.71 16 17 C -0.58 -10.84 6.12 37.16 0.23 -10.61 16 18 C -0.01 -0.15 4.05 -27.89 -0.11 -0.26 16 19 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 20 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 21 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 22 N -0.89 -26.88 13.96 55.43 0.77 -26.10 16 23 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 29 H 0.06 0.35 7.67 -51.93 -0.40 -0.04 16 30 H 0.13 1.27 6.28 -52.49 -0.33 0.94 16 31 H 0.13 1.63 6.65 -52.48 -0.35 1.28 16 32 H 0.13 1.32 7.99 -52.49 -0.42 0.90 16 33 H 0.07 0.67 7.94 -51.93 -0.41 0.26 16 34 H 0.08 0.99 7.82 -51.92 -0.41 0.59 16 35 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.88 7.95 -51.93 -0.41 0.47 16 39 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 40 H 0.09 0.96 7.65 -51.93 -0.40 0.56 16 41 H 0.13 2.10 8.14 -51.92 -0.42 1.68 16 42 H 0.12 2.11 6.74 -51.92 -0.35 1.76 16 43 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 44 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -34.77 370.93 -10.06 -44.83 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.74 Total: 0.46 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: -2.11 Total: -29.56 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.62 Total: -39.67 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -2.18 Total: -44.05 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Atomic # 16 Polarization: 46.19 SS G_CDS: -0.57 Total: 45.62 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.77 -10.06 -44.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270782187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.853 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds