Wall clock time and date at job start Tue Mar 31 2020 23:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36004 * 116.99903 * 2 1 4 4 C 1.38722 * 120.02101 * 359.97438 * 3 2 1 5 5 C 1.38112 * 120.24044 * 180.76539 * 4 3 2 6 6 C 1.39453 * 119.68784 * 359.89085 * 5 4 3 7 7 C 1.37936 * 119.70941 * 358.88138 * 6 5 4 8 8 C 1.37850 * 120.77373 * 1.73118 * 7 6 5 9 9 C 1.51920 * 119.08518 * 182.22370 * 7 6 5 10 10 C 1.52516 * 109.18021 * 291.77374 * 9 7 6 11 11 C 1.52208 * 111.23356 * 85.62326 * 10 9 7 12 12 C 1.51052 * 113.62827 * 290.10237 * 11 10 9 13 13 N 1.39875 * 119.75123 * 178.16528 * 6 5 4 14 14 S 1.65600 * 121.02168 * 69.05167 * 13 6 5 15 15 O 1.42101 * 104.27882 * 153.65147 * 14 13 6 16 16 O 1.42102 * 104.27187 * 25.79522 * 14 13 6 17 17 C 1.81399 * 104.45301 * 269.72485 * 14 13 6 18 18 C 1.52996 * 109.47218 * 179.97438 * 17 14 13 19 19 C 1.50696 * 109.47142 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00056 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00096 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99914 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99841 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46821 * 90.00479 * 23 21 19 25 25 H 1.48504 * 109.47204 * 210.00370 * 23 21 19 26 26 H 1.48504 * 109.47330 * 330.00494 * 23 21 19 27 27 H 1.09001 * 109.46799 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47414 * 300.00072 * 1 2 3 29 29 H 1.08997 * 109.46967 * 60.00484 * 1 2 3 30 30 H 1.08001 * 119.88289 * 0.78737 * 4 3 2 31 31 H 1.08003 * 120.10626 * 179.97438 * 5 4 3 32 32 H 1.07993 * 120.19376 * 178.87669 * 8 7 6 33 33 H 1.08997 * 109.52384 * 171.85579 * 9 7 6 34 34 H 1.09008 * 109.56658 * 51.70858 * 9 7 6 35 35 H 1.09000 * 109.12775 * 325.17750 * 10 9 7 36 36 H 1.08994 * 109.12840 * 206.07385 * 10 9 7 37 37 H 1.09000 * 108.65691 * 169.03174 * 11 10 9 38 38 H 1.08999 * 108.54841 * 51.09631 * 11 10 9 39 39 H 1.09004 * 109.33402 * 303.78594 * 12 11 10 40 40 H 1.08995 * 109.33417 * 184.29412 * 12 11 10 41 41 H 1.09001 * 109.46838 * 300.00058 * 17 14 13 42 42 H 1.08998 * 109.46934 * 59.99858 * 17 14 13 43 43 H 1.09004 * 109.47227 * 300.00383 * 18 17 14 44 44 H 1.09001 * 109.46834 * 59.99744 * 18 17 14 45 45 H 0.97002 * 119.99491 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2913 2.3755 -0.0005 5 6 1.9135 3.6084 -0.0165 6 6 3.3062 3.6791 -0.0298 7 6 4.0499 2.5178 -0.0035 8 6 3.4330 1.2850 0.0001 9 6 5.5658 2.6122 0.0331 10 6 6.0655 3.1674 -1.2966 11 6 6.0497 4.6894 -1.2993 12 6 4.6598 5.2805 -1.3178 13 7 3.9374 4.9262 -0.0848 14 16 3.8796 5.9694 1.2000 15 8 5.0541 6.7577 1.0644 16 8 3.6895 5.1260 2.3278 17 6 2.3999 6.9750 0.9006 18 6 2.2348 7.9895 2.0338 19 6 1.0052 8.8245 1.7853 20 1 0.4020 8.6494 0.9068 21 6 0.6508 9.8128 2.6791 22 7 -0.4221 10.5418 2.4620 23 14 1.6945 10.1162 4.1983 24 1 2.7432 11.1202 3.8859 25 1 0.8340 10.6247 5.2966 26 1 2.3361 8.8451 4.6201 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 0.2130 2.3172 0.0119 31 1 1.3235 4.5130 -0.0173 32 1 4.0246 0.3816 0.0025 33 1 5.9887 1.6209 0.1960 34 1 5.8708 3.2757 0.8425 35 1 5.4249 2.8023 -2.0994 36 1 7.0844 2.8205 -1.4681 37 1 6.5902 5.0422 -2.1776 38 1 6.5670 5.0431 -0.4074 39 1 4.1147 4.8939 -2.1790 40 1 4.7300 6.3654 -1.3957 41 1 2.5049 7.5025 -0.0475 42 1 1.5231 6.3286 0.8616 43 1 2.1298 7.4617 2.9817 44 1 3.1116 8.6359 2.0733 45 1 -0.6715 11.2368 3.0910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270782187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:31 Heat of formation + Delta-G solvation = -110.680745 kcal Electronic energy + Delta-G solvation = -28353.759894 eV Core-core repulsion = 24462.510751 eV Total energy + Delta-G solvation = -3891.249143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.49459 -39.75915 -38.36727 -37.14984 -36.82535 -35.94709 -35.28873 -33.52619 -32.36795 -31.12080 -28.25377 -27.96133 -27.64654 -25.44212 -24.00208 -23.01846 -22.33957 -21.39507 -20.11354 -19.46019 -18.84764 -18.56720 -18.09640 -17.37946 -16.89592 -16.63335 -16.57747 -16.41553 -15.87818 -15.46149 -15.35215 -14.94840 -14.83722 -14.67341 -14.45944 -14.08999 -13.93546 -13.84962 -13.61063 -13.49671 -13.29516 -13.21196 -13.11377 -13.03375 -12.98711 -12.65315 -12.29926 -12.12064 -12.03586 -11.97054 -11.76905 -11.60644 -11.57503 -11.49056 -11.32408 -10.86540 -10.36598 -9.85235 -9.00158 -8.38798 -6.44636 -0.90173 0.28899 0.30712 1.29669 1.31899 1.41696 1.53550 2.27332 2.35112 2.59689 2.70046 2.94878 3.06829 3.63957 3.70175 3.73323 3.88423 3.95147 4.03948 4.11214 4.14780 4.23185 4.29911 4.42947 4.45052 4.49264 4.53825 4.57335 4.68608 4.75334 4.79545 4.83520 4.97658 5.01093 5.03407 5.10477 5.14652 5.18915 5.25904 5.29435 5.42567 5.43321 5.51495 5.59430 5.92090 6.14093 6.42270 6.60828 7.19807 8.76595 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012536 B = 0.003898 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.000986 B = 7181.704763 C = 8686.148138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.123 3.877 4 C -0.199 4.199 5 C -0.104 4.104 6 C 0.101 3.899 7 C -0.045 4.045 8 C -0.142 4.142 9 C -0.084 4.084 10 C -0.106 4.106 11 C -0.146 4.146 12 C 0.115 3.885 13 N -0.942 5.942 14 S 2.601 3.399 15 O -0.976 6.976 16 O -0.983 6.983 17 C -0.587 4.587 18 C -0.015 4.015 19 C -0.527 4.527 20 H 0.052 0.948 21 C 0.017 3.983 22 N -0.937 5.937 23 Si 0.921 3.079 24 H -0.258 1.258 25 H -0.272 1.272 26 H -0.253 1.253 27 H 0.122 0.878 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.152 0.848 31 H 0.135 0.865 32 H 0.153 0.847 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.145 0.855 42 H 0.137 0.863 43 H 0.029 0.971 44 H 0.032 0.968 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.703 -21.645 -10.805 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.077 3.923 4 C -0.218 4.218 5 C -0.125 4.125 6 C 0.008 3.992 7 C -0.048 4.048 8 C -0.162 4.162 9 C -0.121 4.121 10 C -0.143 4.143 11 C -0.185 4.185 12 C -0.007 4.007 13 N -0.774 5.774 14 S 2.701 3.299 15 O -0.966 6.966 16 O -0.973 6.973 17 C -0.719 4.719 18 C -0.054 4.054 19 C -0.565 4.565 20 H 0.070 0.930 21 C -0.182 4.182 22 N -0.577 5.577 23 Si 0.743 3.257 24 H -0.183 1.183 25 H -0.197 1.197 26 H -0.177 1.177 27 H 0.140 0.860 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.169 0.831 31 H 0.153 0.847 32 H 0.170 0.830 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.069 0.931 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.361 -21.607 -10.041 25.599 hybrid contribution -0.962 1.076 0.554 1.546 sum 8.399 -20.532 -9.486 24.127 Atomic orbital electron populations 1.23362 0.76533 1.05672 1.02240 1.86067 1.23327 1.26236 1.88540 1.19188 0.92542 0.84566 0.96015 1.21293 1.01348 0.91206 1.07991 1.21592 0.93421 0.98944 0.98504 1.17057 0.90663 0.84645 1.06848 1.19942 0.97023 0.91240 0.96642 1.20338 0.91517 0.97824 1.06479 1.20873 0.89339 1.02909 0.98977 1.21217 1.02535 0.94480 0.96081 1.21571 0.96590 0.96634 1.03669 1.21464 0.92905 1.01142 0.85234 1.55424 1.65247 1.25205 1.31492 1.05266 0.76953 0.74308 0.73383 1.93518 1.45496 1.71661 1.85916 1.93519 1.87616 1.65831 1.50326 1.30388 1.19572 1.12476 1.09422 1.19363 0.98158 0.94376 0.93510 1.21118 1.09248 1.16898 1.09283 0.92982 1.25818 0.96100 0.95233 1.01016 1.69996 1.26542 1.22539 1.38588 0.86091 0.79726 0.80104 0.79760 1.18298 1.19673 1.17680 0.86029 0.92204 0.91526 0.83070 0.84731 0.82952 0.88561 0.92804 0.90751 0.89255 0.88030 0.93148 0.87992 0.88954 0.83660 0.84446 0.95292 0.95020 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.47 10.50 -93.60 -0.98 -7.45 16 3 C 0.12 2.74 6.69 22.53 0.15 2.89 16 4 C -0.20 -4.47 9.03 22.36 0.20 -4.27 16 5 C -0.10 -2.67 9.92 22.53 0.22 -2.45 16 6 C 0.10 2.72 4.52 38.08 0.17 2.89 16 7 C -0.05 -1.09 5.09 -19.64 -0.10 -1.19 16 8 C -0.14 -3.11 9.63 22.32 0.22 -2.89 16 9 C -0.08 -1.71 5.49 30.08 0.17 -1.54 16 10 C -0.11 -1.68 5.60 30.17 0.17 -1.52 16 11 C -0.15 -2.70 5.51 29.70 0.16 -2.54 16 12 C 0.12 2.40 5.54 85.61 0.47 2.88 16 13 N -0.94 -25.77 2.53 -341.14 -0.86 -26.63 16 14 S 2.60 92.63 5.34 -56.49 -0.30 92.33 16 15 O -0.98 -37.87 17.06 -127.65 -2.18 -40.05 16 16 O -0.98 -40.95 17.29 -127.65 -2.21 -43.16 16 17 C -0.59 -21.75 6.12 71.98 0.44 -21.31 16 18 C -0.01 -0.71 4.05 29.85 0.12 -0.59 16 19 C -0.53 -29.75 9.66 25.60 0.25 -29.50 16 20 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 21 C 0.02 1.00 5.47 84.66 0.46 1.46 16 22 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 23 Si 0.92 43.93 27.47 68.60 1.88 45.81 16 24 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 27 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.72 7.65 -2.39 -0.02 0.71 16 29 H 0.07 0.69 7.67 -2.39 -0.02 0.67 16 30 H 0.15 2.66 6.28 -2.91 -0.02 2.64 16 31 H 0.13 3.26 6.65 -2.91 -0.02 3.24 16 32 H 0.15 2.63 7.99 -2.91 -0.02 2.61 16 33 H 0.10 1.50 7.94 -2.39 -0.02 1.48 16 34 H 0.05 1.36 7.82 -2.38 -0.02 1.34 16 35 H 0.07 1.08 7.87 -2.39 -0.02 1.06 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.17 7.95 -2.39 -0.02 1.15 16 39 H 0.10 1.65 8.06 -2.39 -0.02 1.63 16 40 H 0.09 1.85 7.65 -2.39 -0.02 1.83 16 41 H 0.15 4.75 8.14 -2.39 -0.02 4.73 16 42 H 0.14 4.67 6.74 -2.39 -0.02 4.65 16 43 H 0.03 1.39 7.20 -2.38 -0.02 1.37 16 44 H 0.03 1.47 7.57 -2.39 -0.02 1.46 16 45 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -75.54 370.93 0.80 -74.74 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.93 Total: 17.79 kcal Atomic # 6 Polarization: -60.58 SS G_CDS: 4.22 Total: -56.36 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -0.56 Total: -83.65 kcal Atomic # 8 Polarization: -85.29 SS G_CDS: -5.37 Total: -90.66 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.81 kcal Atomic # 16 Polarization: 92.63 SS G_CDS: -0.30 Total: 92.33 kcal Total: -75.54 0.80 -74.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270782187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.939 kcal (2) G-P(sol) polarization free energy of solvation -75.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds