Wall clock time and date at job start Tue Mar 31 2020 22:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99891 * 2 1 4 4 C 1.38734 * 120.05615 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94282 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05657 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94279 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47354 * 24.99799 * 7 6 5 9 9 O 1.42901 * 109.47107 * 144.99582 * 7 6 5 10 10 C 1.42894 * 114.00473 * 270.00079 * 9 7 6 11 11 C 1.52995 * 109.47228 * 264.99726 * 7 6 5 12 12 H 1.09002 * 109.46830 * 54.99943 * 11 7 6 13 13 C 1.53000 * 109.47187 * 295.00451 * 11 7 6 14 14 N 1.46496 * 109.47630 * 175.00091 * 11 7 6 15 15 C 1.34777 * 120.00258 * 205.00405 * 14 11 7 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 14 11 17 17 C 1.50706 * 119.99762 * 179.97438 * 15 14 11 18 18 S 1.81003 * 109.46853 * 179.97438 * 17 15 14 19 19 C 1.76196 * 99.99846 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00030 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99637 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00513 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99570 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47083 * 60.00261 * 23 21 19 25 25 H 1.48506 * 109.46585 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47209 * 299.99712 * 23 21 19 27 27 C 1.38264 * 120.11042 * 0.27516 * 6 5 4 28 28 C 1.38146 * 120.05898 * 359.45565 * 27 6 5 29 29 H 1.08998 * 109.46974 * 299.99553 * 1 2 3 30 30 H 1.09003 * 109.47301 * 60.00020 * 1 2 3 31 31 H 1.09000 * 109.46890 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.02347 * 359.95304 * 4 3 2 33 33 H 1.07997 * 119.96970 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.47203 * 300.00036 * 10 9 7 35 35 H 1.09000 * 109.47250 * 59.99573 * 10 9 7 36 36 H 1.08999 * 109.47232 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.46821 * 299.99498 * 13 11 7 38 38 H 1.08992 * 109.47302 * 59.99702 * 13 11 7 39 39 H 1.09006 * 109.47229 * 180.02562 * 13 11 7 40 40 H 0.96999 * 119.99694 * 24.99795 * 14 11 7 41 41 H 1.09000 * 109.47318 * 299.99141 * 17 15 14 42 42 H 1.09000 * 109.47161 * 59.99772 * 17 15 14 43 43 H 0.96995 * 120.00407 * 180.02562 * 22 21 19 44 44 H 1.08001 * 119.96966 * 179.70700 * 27 6 5 45 45 H 1.07998 * 120.02734 * 180.27895 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0028 8 1 4.9806 4.9192 -0.4373 9 8 3.2186 5.9434 -0.7760 10 6 3.5733 5.9790 -2.1598 11 6 4.1059 5.5311 1.4338 12 1 4.6142 4.7848 2.0445 13 6 2.7088 5.7891 2.0016 14 7 4.8754 6.7776 1.4450 15 6 5.5376 7.1508 2.5579 16 8 5.4962 6.4550 3.5504 17 6 6.3297 8.4329 2.5692 18 16 7.0966 8.6541 4.1937 19 6 7.9342 10.1818 3.9312 20 1 7.8672 10.6767 2.9737 21 6 8.6809 10.7486 4.9548 22 7 8.7637 10.1446 6.1214 23 14 9.5695 12.3680 4.6763 24 1 8.5821 13.4208 4.3271 25 1 10.2907 12.7562 5.9150 26 1 10.5427 12.2139 3.5652 27 6 1.9210 3.6048 0.0041 28 6 1.2914 2.3751 -0.0009 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0208 0.3799 -0.0002 33 1 5.1345 2.5751 -0.0019 34 1 4.6199 6.2671 -2.2594 35 1 3.4249 4.9922 -2.5984 36 1 2.9462 6.7051 -2.6771 37 1 2.2006 6.5353 1.3909 38 1 2.1363 4.8616 1.9933 39 1 2.7943 6.1546 3.0249 40 1 4.9084 7.3343 0.6514 41 1 7.1049 8.3878 1.8043 42 1 5.6652 9.2723 2.3641 43 1 9.2852 10.5409 6.8368 44 1 1.3342 4.5114 0.0085 45 1 0.2129 2.3202 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271660650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:18 Heat of formation + Delta-G solvation = -95.503065 kcal Electronic energy + Delta-G solvation = -26499.726913 eV Core-core repulsion = 22609.135924 eV Total energy + Delta-G solvation = -3890.590989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70099 -39.63790 -38.56831 -37.15432 -34.97146 -32.40857 -32.10744 -31.38644 -30.25527 -28.46684 -27.79666 -27.11756 -25.78228 -25.43413 -22.83574 -22.45107 -20.76473 -20.18242 -18.51221 -17.87135 -17.08421 -16.87313 -16.52508 -16.09328 -15.91703 -15.79820 -15.01257 -14.84748 -14.78519 -14.77481 -14.05210 -13.96326 -13.91807 -13.64363 -13.26562 -13.21208 -12.98853 -12.67088 -12.57003 -12.34139 -11.97836 -11.93665 -11.81175 -11.50548 -11.26394 -11.07676 -11.02433 -11.02013 -10.90113 -10.74893 -10.04756 -9.79398 -9.35309 -9.25852 -9.04337 -8.88360 -8.40527 -8.20991 -6.47224 -6.19347 -3.89663 1.02592 1.09068 2.90865 3.05109 3.13456 3.24898 3.28510 3.31338 3.39572 3.48918 3.76110 4.22721 4.46827 4.53158 4.56108 4.69790 4.73629 4.75649 4.82042 5.05224 5.09223 5.10766 5.13549 5.15538 5.17440 5.22737 5.32684 5.38716 5.44985 5.50117 5.66762 5.74032 5.83589 5.92228 5.93023 6.03510 6.10029 6.17932 6.23245 6.36297 6.42617 6.71620 6.88302 7.04022 7.61398 7.79070 8.37213 8.67232 9.25740 10.87989 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025353 B = 0.002015 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.129944 B =13891.313949 C =14432.332259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.129 3.871 4 C -0.153 4.153 5 C -0.068 4.068 6 C -0.147 4.147 7 C 0.128 3.872 8 H 0.076 0.924 9 O -0.373 6.373 10 C 0.029 3.971 11 C 0.155 3.845 12 H 0.099 0.901 13 C -0.161 4.161 14 N -0.732 5.732 15 C 0.533 3.467 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.048 4.048 28 C -0.213 4.213 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.133 0.867 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.430 -16.647 -19.089 30.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.172 4.172 5 C -0.086 4.086 6 C -0.148 4.148 7 C 0.069 3.931 8 H 0.094 0.906 9 O -0.291 6.291 10 C -0.068 4.068 11 C 0.050 3.950 12 H 0.116 0.884 13 C -0.219 4.219 14 N -0.386 5.386 15 C 0.319 3.681 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.067 4.067 28 C -0.231 4.231 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.233 0.767 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.151 0.849 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.487 -17.887 -17.149 29.764 hybrid contribution 0.522 2.057 -1.902 2.850 sum -15.965 -15.831 -19.052 29.470 Atomic orbital electron populations 1.23064 0.78315 1.03959 1.01459 1.86070 1.21468 1.27061 1.88640 1.19094 0.92416 0.84145 0.95973 1.20380 0.91364 0.98586 1.06846 1.20858 0.99965 0.90917 0.96851 1.20085 0.94331 0.94714 1.05689 1.21187 0.93735 0.85931 0.92199 0.90611 1.87940 1.60771 1.60757 1.19636 1.22825 1.00340 1.01346 0.82272 1.20918 0.93323 0.87514 0.93248 0.88361 1.22151 0.95874 1.02164 1.01761 1.46019 1.52204 1.24529 1.15853 1.20305 0.78410 0.86940 0.82429 1.90698 1.61571 1.54008 1.32909 1.23533 1.02011 0.96804 1.08021 1.85386 1.61242 1.29657 1.07019 1.22833 1.35789 1.08077 1.01716 0.90997 1.24988 0.95966 0.98166 0.94454 1.70005 1.38901 1.38586 1.02807 0.86232 0.79433 0.82133 0.77742 1.19950 1.20823 1.19968 1.20825 0.93936 0.97160 0.94736 1.21258 1.00062 0.92296 1.09523 0.92495 0.92651 0.88239 0.85075 0.85136 0.93779 0.94034 0.89521 0.91673 0.91799 0.91871 0.76651 0.89316 0.89228 0.92149 0.84916 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.91 10.50 -19.43 -0.20 -3.12 16 3 C 0.13 1.24 6.69 -39.21 -0.26 0.98 16 4 C -0.15 -1.44 9.99 -39.43 -0.39 -1.83 16 5 C -0.07 -0.62 9.67 -39.61 -0.38 -1.00 16 6 C -0.15 -1.40 4.69 -104.61 -0.49 -1.90 16 7 C 0.13 1.24 2.19 -27.89 -0.06 1.18 16 8 H 0.08 0.67 7.69 -51.93 -0.40 0.28 16 9 O -0.37 -3.48 8.35 -35.23 -0.29 -3.78 16 10 C 0.03 0.20 10.81 101.05 1.09 1.29 16 11 C 0.16 1.94 2.44 -67.94 -0.17 1.77 16 12 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 13 C -0.16 -2.00 8.60 37.16 0.32 -1.68 16 14 N -0.73 -10.15 5.06 -53.81 -0.27 -10.42 16 15 C 0.53 10.04 7.81 -10.98 -0.09 9.95 16 16 O -0.52 -11.78 15.53 5.56 0.09 -11.69 16 17 C -0.15 -3.12 6.16 36.01 0.22 -2.89 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 23 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 C -0.05 -0.45 7.39 -39.61 -0.29 -0.74 16 28 C -0.21 -1.86 9.04 -39.43 -0.36 -2.22 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.77 7.56 -51.93 -0.39 0.38 16 38 H 0.06 0.71 5.91 -51.93 -0.31 0.40 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.40 4.59 8.38 -40.82 -0.34 4.25 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.13 1.17 7.16 -52.49 -0.38 0.79 16 45 H 0.13 0.85 6.30 -52.49 -0.33 0.52 16 LS Contribution 389.46 15.07 5.87 5.87 Total: -1.00 -35.13 389.46 -7.67 -42.80 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.68 Total: 2.26 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 0.33 Total: -9.00 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.46 Total: -35.98 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.41 Total: -18.58 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.13 -7.67 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271660650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.706 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds