Wall clock time and date at job start Tue Mar 31 2020 22:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99891 * 2 1 4 4 C 1.38734 * 120.05615 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94282 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05657 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94279 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47354 * 24.99799 * 7 6 5 9 9 O 1.42901 * 109.47107 * 144.99582 * 7 6 5 10 10 C 1.42894 * 114.00473 * 270.00079 * 9 7 6 11 11 C 1.52995 * 109.47228 * 264.99726 * 7 6 5 12 12 H 1.09002 * 109.46830 * 54.99943 * 11 7 6 13 13 C 1.53000 * 109.47187 * 295.00451 * 11 7 6 14 14 N 1.46496 * 109.47630 * 175.00091 * 11 7 6 15 15 C 1.34777 * 120.00258 * 205.00405 * 14 11 7 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 14 11 17 17 C 1.50706 * 119.99762 * 179.97438 * 15 14 11 18 18 S 1.81003 * 109.46853 * 179.97438 * 17 15 14 19 19 C 1.76196 * 99.99846 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00030 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99637 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00513 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99570 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47083 * 60.00261 * 23 21 19 25 25 H 1.48506 * 109.46585 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47209 * 299.99712 * 23 21 19 27 27 C 1.38264 * 120.11042 * 0.27516 * 6 5 4 28 28 C 1.38146 * 120.05898 * 359.45565 * 27 6 5 29 29 H 1.08998 * 109.46974 * 299.99553 * 1 2 3 30 30 H 1.09003 * 109.47301 * 60.00020 * 1 2 3 31 31 H 1.09000 * 109.46890 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.02347 * 359.95304 * 4 3 2 33 33 H 1.07997 * 119.96970 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.47203 * 300.00036 * 10 9 7 35 35 H 1.09000 * 109.47250 * 59.99573 * 10 9 7 36 36 H 1.08999 * 109.47232 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.46821 * 299.99498 * 13 11 7 38 38 H 1.08992 * 109.47302 * 59.99702 * 13 11 7 39 39 H 1.09006 * 109.47229 * 180.02562 * 13 11 7 40 40 H 0.96999 * 119.99694 * 24.99795 * 14 11 7 41 41 H 1.09000 * 109.47318 * 299.99141 * 17 15 14 42 42 H 1.09000 * 109.47161 * 59.99772 * 17 15 14 43 43 H 0.96995 * 120.00407 * 180.02562 * 22 21 19 44 44 H 1.08001 * 119.96966 * 179.70700 * 27 6 5 45 45 H 1.07998 * 120.02734 * 180.27895 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0028 8 1 4.9806 4.9192 -0.4373 9 8 3.2186 5.9434 -0.7760 10 6 3.5733 5.9790 -2.1598 11 6 4.1059 5.5311 1.4338 12 1 4.6142 4.7848 2.0445 13 6 2.7088 5.7891 2.0016 14 7 4.8754 6.7776 1.4450 15 6 5.5376 7.1508 2.5579 16 8 5.4962 6.4550 3.5504 17 6 6.3297 8.4329 2.5692 18 16 7.0966 8.6541 4.1937 19 6 7.9342 10.1818 3.9312 20 1 7.8672 10.6767 2.9737 21 6 8.6809 10.7486 4.9548 22 7 8.7637 10.1446 6.1214 23 14 9.5695 12.3680 4.6763 24 1 8.5821 13.4208 4.3271 25 1 10.2907 12.7562 5.9150 26 1 10.5427 12.2139 3.5652 27 6 1.9210 3.6048 0.0041 28 6 1.2914 2.3751 -0.0009 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0208 0.3799 -0.0002 33 1 5.1345 2.5751 -0.0019 34 1 4.6199 6.2671 -2.2594 35 1 3.4249 4.9922 -2.5984 36 1 2.9462 6.7051 -2.6771 37 1 2.2006 6.5353 1.3909 38 1 2.1363 4.8616 1.9933 39 1 2.7943 6.1546 3.0249 40 1 4.9084 7.3343 0.6514 41 1 7.1049 8.3878 1.8043 42 1 5.6652 9.2723 2.3641 43 1 9.2852 10.5409 6.8368 44 1 1.3342 4.5114 0.0085 45 1 0.2129 2.3202 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271660650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:17 Heat of formation + Delta-G solvation = -119.258981 kcal Electronic energy + Delta-G solvation = -26500.757047 eV Core-core repulsion = 22609.135924 eV Total energy + Delta-G solvation = -3891.621123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45900 -40.71742 -39.58577 -37.82652 -36.13867 -34.57155 -33.19151 -32.06589 -31.30875 -29.75823 -28.44624 -27.70989 -27.63359 -26.50214 -23.50856 -23.38369 -21.67419 -21.49258 -19.84649 -19.13311 -18.03955 -17.84696 -17.62722 -16.96574 -16.86636 -16.64199 -16.57886 -16.28190 -15.95690 -15.64378 -15.56058 -14.74810 -14.63602 -14.56516 -14.52849 -14.33689 -14.17434 -13.85330 -13.58659 -13.21838 -13.15550 -12.89948 -12.85861 -12.79626 -12.64200 -12.53242 -12.25248 -12.07772 -11.81371 -11.73606 -11.62492 -11.11732 -10.96426 -10.67768 -10.26290 -10.14766 -9.95432 -9.11518 -8.65078 -8.33135 -6.11143 0.33489 0.39376 1.27890 1.44749 1.47640 1.57444 1.63310 2.24466 2.29750 2.37448 2.70129 2.76638 3.00728 3.33281 3.72842 3.79306 3.87632 3.93873 4.04873 4.05792 4.28117 4.31095 4.37787 4.38750 4.42750 4.48007 4.52584 4.55408 4.62549 4.64679 4.72262 4.73741 4.78540 4.94320 4.99976 5.07831 5.24076 5.30513 5.37976 5.42882 5.50453 5.55512 5.77675 6.20448 6.20958 6.42719 6.52951 7.07889 7.26476 8.75761 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025353 B = 0.002015 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.129944 B =13891.313949 C =14432.332259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.119 3.881 4 C -0.167 4.167 5 C -0.072 4.072 6 C -0.156 4.156 7 C 0.141 3.859 8 H 0.087 0.913 9 O -0.382 6.382 10 C 0.024 3.976 11 C 0.153 3.847 12 H 0.079 0.921 13 C -0.153 4.153 14 N -0.706 5.706 15 C 0.536 3.464 16 O -0.563 6.563 17 C -0.129 4.129 18 S -0.150 6.150 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.262 1.262 27 C -0.053 4.053 28 C -0.214 4.214 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.415 0.585 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.138 0.862 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.082 -15.918 -21.685 31.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.073 3.927 4 C -0.185 4.185 5 C -0.090 4.090 6 C -0.157 4.157 7 C 0.083 3.917 8 H 0.105 0.895 9 O -0.301 6.301 10 C -0.072 4.072 11 C 0.048 3.952 12 H 0.098 0.902 13 C -0.211 4.211 14 N -0.360 5.360 15 C 0.322 3.678 16 O -0.441 6.441 17 C -0.280 4.280 18 S 0.077 5.923 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.071 4.071 28 C -0.233 4.233 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.252 0.748 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.155 0.845 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.172 -17.164 -19.811 31.336 hybrid contribution 0.592 1.710 -1.198 2.170 sum -16.580 -15.454 -21.009 30.905 Atomic orbital electron populations 1.23334 0.76500 1.05532 1.02237 1.86049 1.23448 1.26995 1.88572 1.19293 0.92727 0.84690 0.95960 1.20588 0.91776 0.99039 1.07110 1.21032 1.00685 0.90787 0.96540 1.20105 0.94603 0.94581 1.06420 1.20939 0.94565 0.85910 0.90323 0.89490 1.87915 1.60834 1.60499 1.20848 1.22984 1.01238 1.02003 0.80932 1.21011 0.92698 0.86125 0.95320 0.90246 1.22066 0.96064 1.02964 1.00027 1.45761 1.50520 1.24935 1.14776 1.20054 0.78593 0.86145 0.83005 1.90691 1.63386 1.55180 1.34873 1.23373 1.02603 0.98429 1.03631 1.85572 1.62679 1.30502 1.13523 1.23179 1.35875 1.08098 1.02344 0.89896 1.26131 0.96721 1.02372 0.93956 1.70176 1.39953 1.40673 1.03953 0.85009 0.78219 0.76805 0.77988 1.18687 1.20424 1.18619 1.20935 0.93921 0.97548 0.94713 1.21463 1.01084 0.91829 1.08924 0.91946 0.91565 0.86419 0.84442 0.83979 0.92898 0.93780 0.88209 0.90757 0.90507 0.94786 0.74789 0.87131 0.87395 0.92013 0.84455 0.83597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.82 10.50 -92.43 -0.97 -6.79 16 3 C 0.12 2.17 6.69 22.51 0.15 2.32 16 4 C -0.17 -3.02 9.99 22.37 0.22 -2.80 16 5 C -0.07 -1.25 9.67 22.25 0.22 -1.04 16 6 C -0.16 -2.76 4.69 -19.85 -0.09 -2.86 16 7 C 0.14 2.49 2.19 29.84 0.07 2.55 16 8 H 0.09 1.35 7.69 -2.39 -0.02 1.33 16 9 O -0.38 -6.19 8.35 -148.98 -1.24 -7.44 16 10 C 0.02 0.27 10.81 113.37 1.23 1.50 16 11 C 0.15 3.69 2.44 44.99 0.11 3.80 16 12 H 0.08 2.28 7.58 -2.39 -0.02 2.26 16 13 C -0.15 -3.70 8.60 71.98 0.62 -3.08 16 14 N -0.71 -18.60 5.06 -442.54 -2.24 -20.84 16 15 C 0.54 20.03 7.81 87.66 0.68 20.72 16 16 O -0.56 -26.32 15.53 -3.03 -0.05 -26.36 16 17 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 18 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 19 C -0.55 -31.37 9.50 67.96 0.65 -30.72 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.74 5.49 84.86 0.47 1.21 16 22 N -0.91 -56.27 13.22 21.65 0.29 -55.98 16 23 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 27 C -0.05 -0.90 7.39 22.25 0.16 -0.73 16 28 C -0.21 -3.43 9.04 22.37 0.20 -3.23 16 29 H 0.06 0.49 7.66 -2.39 -0.02 0.47 16 30 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 31 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.05 0.51 8.09 -2.38 -0.02 0.49 16 35 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 1.65 7.56 -2.39 -0.02 1.63 16 38 H 0.08 1.65 5.91 -2.39 -0.01 1.63 16 39 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.42 8.46 8.38 -92.71 -0.78 7.69 16 41 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 42 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.14 2.15 7.16 -2.91 -0.02 2.13 16 45 H 0.15 1.67 6.30 -2.91 -0.02 1.65 16 Total: -1.00 -77.96 389.46 3.10 -74.85 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.22 Total: 22.21 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 6.23 Total: -15.81 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -1.95 Total: -76.82 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -2.26 Total: -40.59 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -77.96 3.10 -74.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271660650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.408 kcal (2) G-P(sol) polarization free energy of solvation -77.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds