Wall clock time and date at job start Tue Mar 31 2020 22:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35895 * 117.00072 * 2 1 4 4 C 1.38734 * 120.05681 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94383 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05748 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.94420 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47521 * 340.00278 * 7 6 5 9 9 O 1.42896 * 109.47330 * 219.99715 * 7 6 5 10 10 C 1.42900 * 113.99927 * 133.45861 * 9 7 6 11 11 C 1.53010 * 109.47054 * 99.99917 * 7 6 5 12 12 H 1.08999 * 109.46939 * 300.76085 * 11 7 6 13 13 C 1.52999 * 109.47132 * 180.76300 * 11 7 6 14 14 N 1.46498 * 109.46934 * 60.76626 * 11 7 6 15 15 C 1.34778 * 119.99836 * 205.00452 * 14 11 7 16 16 O 1.21287 * 119.99838 * 359.97438 * 15 14 11 17 17 C 1.50692 * 120.00156 * 179.97438 * 15 14 11 18 18 S 1.80998 * 109.47355 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00006 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00556 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99952 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00266 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00239 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47347 * 89.99595 * 23 21 19 25 25 H 1.48495 * 109.47149 * 210.00155 * 23 21 19 26 26 H 1.48499 * 109.46770 * 329.99479 * 23 21 19 27 27 C 1.38264 * 120.10636 * 0.27322 * 6 5 4 28 28 C 1.38139 * 120.06105 * 359.45672 * 27 6 5 29 29 H 1.09007 * 109.46969 * 299.99713 * 1 2 3 30 30 H 1.08994 * 109.47471 * 59.99490 * 1 2 3 31 31 H 1.08998 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.02751 * 359.95555 * 4 3 2 33 33 H 1.07997 * 119.96985 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47246 * 55.41914 * 10 9 7 35 35 H 1.09004 * 109.46940 * 175.41741 * 10 9 7 36 36 H 1.09003 * 109.47375 * 295.41750 * 10 9 7 37 37 H 1.09000 * 109.46900 * 65.30568 * 13 11 7 38 38 H 1.08994 * 109.47053 * 185.30326 * 13 11 7 39 39 H 1.09005 * 109.47120 * 305.31089 * 13 11 7 40 40 H 0.97000 * 120.00039 * 24.99532 * 14 11 7 41 41 H 1.09006 * 109.47395 * 299.99828 * 17 15 14 42 42 H 1.09007 * 109.47373 * 59.99237 * 17 15 14 43 43 H 0.96999 * 120.00291 * 180.02562 * 22 21 19 44 44 H 1.08008 * 119.96503 * 179.70425 * 27 6 5 45 45 H 1.08003 * 120.03200 * 180.27392 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0185 -0.0028 8 1 5.0116 4.9041 0.3484 9 8 3.2831 5.9121 0.8628 10 6 4.1287 6.6496 1.7477 11 6 3.9940 5.5856 -1.4239 12 1 4.5185 4.8975 -2.0867 13 6 4.7054 6.9402 -1.4284 14 7 2.6154 5.7566 -1.8890 15 6 2.3438 5.7493 -3.2091 16 8 3.2408 5.6016 -4.0119 17 6 0.9256 5.9245 -3.6876 18 16 0.8881 5.8701 -5.4964 19 6 -0.8375 6.0942 -5.7735 20 1 -1.5082 6.2120 -4.9353 21 6 -1.3350 6.1183 -7.0691 22 7 -0.5176 5.9743 -8.0908 23 14 -3.1645 6.3552 -7.3629 24 1 -3.4624 7.8047 -7.4866 25 1 -3.5589 5.6601 -8.6144 26 1 -3.9265 5.7889 -6.2210 27 6 1.9211 3.6047 0.0041 28 6 1.2915 2.3751 -0.0010 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0208 0.3799 -0.0002 33 1 5.1345 2.5750 -0.0019 34 1 4.8806 7.1860 1.1689 35 1 3.5288 7.3625 2.3134 36 1 4.6216 5.9628 2.4358 37 1 5.7557 6.7997 -1.1732 38 1 4.6290 7.3873 -2.4195 39 1 4.2383 7.5983 -0.6957 40 1 1.8980 5.8749 -1.2469 41 1 0.3052 5.1230 -3.2868 42 1 0.5428 6.8860 -3.3453 43 1 -0.8652 5.9915 -8.9962 44 1 1.3343 4.5114 0.0085 45 1 0.2129 2.3201 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271660653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:22 Heat of formation + Delta-G solvation = -94.500868 kcal Electronic energy + Delta-G solvation = -27235.815095 eV Core-core repulsion = 23345.267565 eV Total energy + Delta-G solvation = -3890.547531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.56973 -39.59653 -38.38776 -37.16924 -34.81114 -32.40296 -31.71936 -31.28876 -30.60021 -28.44779 -28.03841 -26.94752 -25.46321 -25.31212 -22.86259 -22.11614 -21.00120 -20.13192 -18.34088 -17.87027 -17.10745 -16.67436 -16.46168 -16.03089 -15.88716 -15.51727 -15.16662 -14.84188 -14.77986 -14.65334 -13.99479 -13.85983 -13.65775 -13.48991 -13.21404 -13.06715 -13.01265 -12.64032 -12.56754 -12.16110 -12.07596 -11.91338 -11.84882 -11.40696 -11.22377 -11.11490 -11.04555 -10.99699 -10.93762 -10.74035 -9.88308 -9.76331 -9.29542 -9.14222 -9.04288 -8.75625 -8.26407 -8.19163 -6.45916 -6.19067 -3.88860 1.19183 1.26597 3.05622 3.10019 3.19450 3.23666 3.27706 3.31356 3.44945 3.61710 3.86104 4.23099 4.51349 4.60299 4.71373 4.72387 4.83167 4.93203 4.99080 5.10726 5.11574 5.15928 5.17505 5.25503 5.27235 5.32649 5.33907 5.39505 5.40791 5.52868 5.60396 5.72615 5.87533 5.94989 5.97588 6.06452 6.19584 6.21932 6.25332 6.35779 6.58025 6.70062 6.96316 7.21725 7.62054 7.85477 8.37828 8.72783 9.26218 10.88365 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009552 B = 0.003333 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.500422 B = 8398.880750 C =10356.690136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.130 3.870 4 C -0.153 4.153 5 C -0.071 4.071 6 C -0.130 4.130 7 C 0.128 3.872 8 H 0.083 0.917 9 O -0.376 6.376 10 C 0.028 3.972 11 C 0.137 3.863 12 H 0.096 0.904 13 C -0.166 4.166 14 N -0.724 5.724 15 C 0.533 3.467 16 O -0.520 6.520 17 C -0.152 4.152 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.917 3.083 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.044 4.044 28 C -0.208 4.208 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.399 0.601 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.126 0.874 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.930 -5.378 23.694 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.085 3.915 4 C -0.172 4.172 5 C -0.089 4.089 6 C -0.130 4.130 7 C 0.070 3.930 8 H 0.101 0.899 9 O -0.295 6.295 10 C -0.068 4.068 11 C 0.031 3.969 12 H 0.114 0.886 13 C -0.225 4.225 14 N -0.379 5.379 15 C 0.319 3.681 16 O -0.395 6.395 17 C -0.303 4.303 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.062 4.062 28 C -0.226 4.226 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.235 0.765 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.144 0.856 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.329 -5.814 22.152 24.730 hybrid contribution -2.584 0.535 1.039 2.836 sum 6.746 -5.279 23.191 24.722 Atomic orbital electron populations 1.23082 0.78182 1.03976 1.01655 1.86050 1.21582 1.26995 1.88608 1.19070 0.92403 0.84199 0.95842 1.20328 0.91394 0.98443 1.07012 1.20736 0.99594 0.90896 0.97686 1.19638 0.94154 0.93691 1.05518 1.21186 0.95340 0.86666 0.89821 0.89893 1.87885 1.33924 1.56302 1.51368 1.22914 0.95401 0.95630 0.92854 1.21264 0.84423 0.97574 0.93655 0.88630 1.22238 0.99493 0.97295 1.03448 1.45953 1.08810 1.75889 1.07205 1.20269 0.90845 0.75296 0.81662 1.90687 1.47566 1.47533 1.53707 1.23518 0.95297 1.04611 1.06872 1.85377 1.10943 1.95069 0.91897 1.22874 0.92791 1.57528 0.95115 0.91002 1.24980 0.98905 0.94655 0.94997 1.70020 1.34874 1.46625 0.98805 0.86187 0.83142 0.78419 0.77865 1.20278 1.20771 1.19727 1.20700 0.93826 0.96935 0.94731 1.21275 1.00256 0.92302 1.08797 0.92669 0.92209 0.88248 0.85163 0.85372 0.93451 0.89585 0.94067 0.92189 0.91269 0.91983 0.76547 0.89458 0.89364 0.92227 0.85565 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.69 10.50 -19.41 -0.20 -3.89 16 3 C 0.13 1.56 6.69 -39.21 -0.26 1.30 16 4 C -0.15 -1.70 9.99 -39.43 -0.39 -2.10 16 5 C -0.07 -0.73 9.66 -39.60 -0.38 -1.11 16 6 C -0.13 -1.42 4.89 -104.61 -0.51 -1.93 16 7 C 0.13 1.24 2.26 -27.88 -0.06 1.18 16 8 H 0.08 0.63 7.51 -51.93 -0.39 0.24 16 9 O -0.38 -3.57 8.64 -35.23 -0.30 -3.88 16 10 C 0.03 0.19 10.23 101.05 1.03 1.22 16 11 C 0.14 1.67 2.39 -67.93 -0.16 1.51 16 12 H 0.10 1.34 7.58 -51.93 -0.39 0.95 16 13 C -0.17 -1.85 8.74 37.16 0.32 -1.52 16 14 N -0.72 -10.31 4.19 -53.80 -0.23 -10.54 16 15 C 0.53 10.23 7.81 -10.99 -0.09 10.15 16 16 O -0.52 -11.95 15.53 5.55 0.09 -11.87 16 17 C -0.15 -3.17 6.16 36.00 0.22 -2.94 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 23 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 C -0.04 -0.50 8.37 -39.61 -0.33 -0.84 16 28 C -0.21 -2.40 9.04 -39.43 -0.36 -2.75 16 29 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.13 0.98 8.03 -52.49 -0.42 0.56 16 34 H 0.05 0.29 6.56 -51.93 -0.34 -0.05 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.63 6.32 -51.93 -0.33 0.30 16 40 H 0.40 4.99 6.40 -40.82 -0.26 4.73 16 41 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 42 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.13 1.36 6.35 -52.48 -0.33 1.03 16 45 H 0.13 1.28 6.30 -52.48 -0.33 0.95 16 LS Contribution 386.09 15.07 5.82 5.82 Total: -1.00 -35.66 386.09 -7.63 -43.29 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.52 Total: 3.75 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 0.22 Total: -9.72 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.51 Total: -36.19 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.42 Total: -19.64 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.66 -7.63 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271660653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.213 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds