Wall clock time and date at job start Tue Mar 31 2020 22:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35895 * 117.00072 * 2 1 4 4 C 1.38734 * 120.05681 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94383 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05748 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.94420 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47521 * 340.00278 * 7 6 5 9 9 O 1.42896 * 109.47330 * 219.99715 * 7 6 5 10 10 C 1.42900 * 113.99927 * 133.45861 * 9 7 6 11 11 C 1.53010 * 109.47054 * 99.99917 * 7 6 5 12 12 H 1.08999 * 109.46939 * 300.76085 * 11 7 6 13 13 C 1.52999 * 109.47132 * 180.76300 * 11 7 6 14 14 N 1.46498 * 109.46934 * 60.76626 * 11 7 6 15 15 C 1.34778 * 119.99836 * 205.00452 * 14 11 7 16 16 O 1.21287 * 119.99838 * 359.97438 * 15 14 11 17 17 C 1.50692 * 120.00156 * 179.97438 * 15 14 11 18 18 S 1.80998 * 109.47355 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00006 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00556 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99952 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00266 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00239 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47347 * 89.99595 * 23 21 19 25 25 H 1.48495 * 109.47149 * 210.00155 * 23 21 19 26 26 H 1.48499 * 109.46770 * 329.99479 * 23 21 19 27 27 C 1.38264 * 120.10636 * 0.27322 * 6 5 4 28 28 C 1.38139 * 120.06105 * 359.45672 * 27 6 5 29 29 H 1.09007 * 109.46969 * 299.99713 * 1 2 3 30 30 H 1.08994 * 109.47471 * 59.99490 * 1 2 3 31 31 H 1.08998 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.02751 * 359.95555 * 4 3 2 33 33 H 1.07997 * 119.96985 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47246 * 55.41914 * 10 9 7 35 35 H 1.09004 * 109.46940 * 175.41741 * 10 9 7 36 36 H 1.09003 * 109.47375 * 295.41750 * 10 9 7 37 37 H 1.09000 * 109.46900 * 65.30568 * 13 11 7 38 38 H 1.08994 * 109.47053 * 185.30326 * 13 11 7 39 39 H 1.09005 * 109.47120 * 305.31089 * 13 11 7 40 40 H 0.97000 * 120.00039 * 24.99532 * 14 11 7 41 41 H 1.09006 * 109.47395 * 299.99828 * 17 15 14 42 42 H 1.09007 * 109.47373 * 59.99237 * 17 15 14 43 43 H 0.96999 * 120.00291 * 180.02562 * 22 21 19 44 44 H 1.08008 * 119.96503 * 179.70425 * 27 6 5 45 45 H 1.08003 * 120.03200 * 180.27392 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0185 -0.0028 8 1 5.0116 4.9041 0.3484 9 8 3.2831 5.9121 0.8628 10 6 4.1287 6.6496 1.7477 11 6 3.9940 5.5856 -1.4239 12 1 4.5185 4.8975 -2.0867 13 6 4.7054 6.9402 -1.4284 14 7 2.6154 5.7566 -1.8890 15 6 2.3438 5.7493 -3.2091 16 8 3.2408 5.6016 -4.0119 17 6 0.9256 5.9245 -3.6876 18 16 0.8881 5.8701 -5.4964 19 6 -0.8375 6.0942 -5.7735 20 1 -1.5082 6.2120 -4.9353 21 6 -1.3350 6.1183 -7.0691 22 7 -0.5176 5.9743 -8.0908 23 14 -3.1645 6.3552 -7.3629 24 1 -3.4624 7.8047 -7.4866 25 1 -3.5589 5.6601 -8.6144 26 1 -3.9265 5.7889 -6.2210 27 6 1.9211 3.6047 0.0041 28 6 1.2915 2.3751 -0.0010 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0208 0.3799 -0.0002 33 1 5.1345 2.5750 -0.0019 34 1 4.8806 7.1860 1.1689 35 1 3.5288 7.3625 2.3134 36 1 4.6216 5.9628 2.4358 37 1 5.7557 6.7997 -1.1732 38 1 4.6290 7.3873 -2.4195 39 1 4.2383 7.5983 -0.6957 40 1 1.8980 5.8749 -1.2469 41 1 0.3052 5.1230 -3.2868 42 1 0.5428 6.8860 -3.3453 43 1 -0.8652 5.9915 -8.9962 44 1 1.3343 4.5114 0.0085 45 1 0.2129 2.3201 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271660653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:21 Heat of formation + Delta-G solvation = -118.446387 kcal Electronic energy + Delta-G solvation = -27236.853451 eV Core-core repulsion = 23345.267565 eV Total energy + Delta-G solvation = -3891.585887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46594 -40.68085 -39.49864 -37.93430 -35.96781 -34.58504 -32.88352 -32.09898 -31.59514 -29.92024 -28.71776 -27.66274 -27.56404 -26.07394 -23.74486 -23.06602 -21.95851 -21.42302 -19.86039 -19.14066 -18.09827 -17.89895 -17.34187 -17.11741 -16.88181 -16.65746 -16.39142 -16.33689 -16.04777 -15.76571 -15.47597 -14.74314 -14.63400 -14.55751 -14.31599 -14.28307 -14.13034 -13.75126 -13.64979 -13.25391 -13.16560 -12.99068 -12.89259 -12.82935 -12.63336 -12.59563 -12.16665 -12.07790 -11.87059 -11.73134 -11.70846 -11.14374 -10.91183 -10.57321 -10.27613 -10.09309 -9.90038 -9.10433 -8.66116 -8.34587 -6.12444 0.36809 0.41728 1.26921 1.41920 1.46720 1.57300 1.66026 2.24600 2.29075 2.36736 2.72026 2.85542 2.99429 3.33540 3.69821 3.79924 3.86802 3.93173 4.02536 4.18196 4.27586 4.30007 4.35478 4.37929 4.40414 4.44792 4.49217 4.54750 4.64440 4.66648 4.70292 4.73925 4.77961 4.94697 4.98993 5.07170 5.24600 5.32718 5.38985 5.41476 5.52813 5.55218 5.79582 6.19709 6.25447 6.41794 6.54611 7.06561 7.28977 8.74695 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009552 B = 0.003333 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.500422 B = 8398.880750 C =10356.690136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.112 3.888 4 C -0.167 4.167 5 C -0.072 4.072 6 C -0.140 4.140 7 C 0.141 3.859 8 H 0.113 0.887 9 O -0.389 6.389 10 C 0.021 3.979 11 C 0.132 3.868 12 H 0.077 0.923 13 C -0.160 4.160 14 N -0.700 5.700 15 C 0.535 3.465 16 O -0.564 6.564 17 C -0.129 4.129 18 S -0.146 6.146 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.258 1.258 27 C -0.057 4.057 28 C -0.220 4.220 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.119 0.881 32 H 0.141 0.859 33 H 0.156 0.844 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.411 0.589 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.130 0.870 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.387 -5.007 26.088 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.067 3.933 4 C -0.185 4.185 5 C -0.089 4.089 6 C -0.140 4.140 7 C 0.082 3.918 8 H 0.130 0.870 9 O -0.308 6.308 10 C -0.075 4.075 11 C 0.027 3.973 12 H 0.095 0.905 13 C -0.218 4.218 14 N -0.354 5.354 15 C 0.321 3.679 16 O -0.443 6.443 17 C -0.281 4.281 18 S 0.081 5.919 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.182 1.182 27 C -0.076 4.076 28 C -0.238 4.238 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.159 0.841 33 H 0.173 0.827 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.248 0.752 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.148 0.852 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.786 -5.436 24.615 26.696 hybrid contribution -2.349 0.403 0.434 2.423 sum 6.437 -5.034 25.050 26.349 Atomic orbital electron populations 1.23299 0.76746 1.05483 1.01968 1.86025 1.23197 1.27046 1.88670 1.19343 0.93061 0.84522 0.96362 1.20636 0.91424 0.99434 1.07012 1.21074 1.01029 0.90298 0.96536 1.19877 0.94125 0.94623 1.05416 1.21046 0.96791 0.85805 0.88138 0.86969 1.87876 1.34868 1.56427 1.51594 1.23117 0.95626 0.95927 0.92832 1.21487 0.82621 0.98159 0.95022 0.90507 1.22184 1.01330 0.96365 1.01938 1.45759 1.10520 1.73652 1.05459 1.19985 0.89581 0.75338 0.82976 1.90675 1.48361 1.50042 1.55202 1.23362 0.97176 1.06172 1.01365 1.85534 1.12022 1.95423 0.98943 1.23203 0.92797 1.57650 0.95876 0.90090 1.26111 1.04492 0.93867 0.94521 1.70182 1.37484 1.47688 0.99402 0.84969 0.76199 0.78759 0.78151 1.19242 1.20229 1.18233 1.20870 0.94450 0.97045 0.95202 1.21455 1.00930 0.92384 1.09065 0.91460 0.92744 0.86233 0.84095 0.82681 0.92508 0.88703 0.92872 0.89372 0.94506 0.90647 0.75200 0.87877 0.87583 0.91984 0.85208 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.42 16 2 O -0.34 -7.65 10.50 -92.37 -0.97 -8.62 16 3 C 0.11 2.66 6.69 22.51 0.15 2.81 16 4 C -0.17 -3.55 9.99 22.37 0.22 -3.33 16 5 C -0.07 -1.34 9.66 22.25 0.22 -1.13 16 6 C -0.14 -2.82 4.89 -19.85 -0.10 -2.92 16 7 C 0.14 2.35 2.26 29.85 0.07 2.42 16 8 H 0.11 1.26 7.51 -2.39 -0.02 1.24 16 9 O -0.39 -6.25 8.64 -148.98 -1.29 -7.54 16 10 C 0.02 0.21 10.23 113.37 1.16 1.37 16 11 C 0.13 3.02 2.39 44.99 0.11 3.13 16 12 H 0.08 2.11 7.58 -2.39 -0.02 2.09 16 13 C -0.16 -3.26 8.74 71.98 0.63 -2.63 16 14 N -0.70 -19.22 4.19 -442.52 -1.85 -21.08 16 15 C 0.54 20.61 7.81 87.65 0.68 21.29 16 16 O -0.56 -26.67 15.53 -3.05 -0.05 -26.72 16 17 C -0.13 -5.37 6.16 71.23 0.44 -4.93 16 18 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 19 C -0.55 -31.76 9.50 67.95 0.65 -31.11 16 20 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.86 5.49 84.86 0.47 1.32 16 22 N -0.91 -56.51 13.22 21.65 0.29 -56.23 16 23 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 27 C -0.06 -1.26 8.37 22.25 0.19 -1.07 16 28 C -0.22 -4.96 9.04 22.37 0.20 -4.75 16 29 H 0.07 0.87 7.66 -2.38 -0.02 0.85 16 30 H 0.05 0.90 7.66 -2.39 -0.02 0.88 16 31 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.16 1.94 8.03 -2.91 -0.02 1.91 16 34 H 0.06 0.47 6.56 -2.39 -0.02 0.46 16 35 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.33 6.32 -2.38 -0.02 1.31 16 40 H 0.41 9.55 6.40 -92.71 -0.59 8.96 16 41 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 42 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.13 2.63 6.35 -2.91 -0.02 2.61 16 45 H 0.14 2.67 6.30 -2.91 -0.02 2.66 16 Total: -1.00 -79.76 386.09 3.60 -76.17 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.41 Total: 25.59 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 6.19 Total: -18.12 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -1.57 Total: -77.30 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -2.30 Total: -42.88 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -79.76 3.60 -76.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271660653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.281 kcal (2) G-P(sol) polarization free energy of solvation -79.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds