Wall clock time and date at job start Tue Mar 31 2020 23:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 117.00202 * 2 1 4 4 C 1.38766 * 120.05358 * 0.25365 * 3 2 1 5 5 C 1.38125 * 119.93889 * 180.32246 * 4 3 2 6 6 C 1.38279 * 120.05606 * 359.67778 * 5 4 3 7 7 C 1.38238 * 120.11834 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05191 * 0.02562 * 7 6 5 9 9 S 1.76203 * 120.02631 * 179.97438 * 8 7 6 10 10 O 1.42101 * 104.27402 * 231.06799 * 9 8 7 11 11 O 1.42093 * 104.27938 * 358.92441 * 9 8 7 12 12 C 1.81400 * 104.45014 * 114.99990 * 9 8 7 13 13 C 1.53001 * 109.47179 * 179.97438 * 12 9 8 14 14 C 1.53003 * 109.47196 * 179.97438 * 13 12 9 15 15 N 1.46499 * 109.47036 * 179.97438 * 14 13 12 16 16 C 1.36937 * 120.00000 * 269.99692 * 15 14 13 17 17 H 1.07998 * 119.99907 * 140.53592 * 16 15 14 18 18 C 1.38817 * 120.00110 * 320.54041 * 16 15 14 19 19 N 1.31623 * 119.99795 * 340.27618 * 18 16 15 20 20 Si 1.86798 * 120.00269 * 160.27596 * 18 16 15 21 21 H 1.48500 * 109.46839 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47299 * 119.99684 * 20 18 16 23 23 H 1.48501 * 109.47166 * 240.00130 * 20 18 16 24 24 C 1.46497 * 120.00142 * 90.00284 * 15 14 13 25 25 C 1.52993 * 117.49878 * 183.28785 * 24 15 14 26 26 C 1.52990 * 117.50067 * 114.66187 * 24 15 14 27 27 H 1.09003 * 109.46877 * 299.99810 * 1 2 3 28 28 H 1.08997 * 109.47485 * 59.99818 * 1 2 3 29 29 H 1.09006 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.02478 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.96739 * 179.70152 * 5 4 3 32 32 H 1.08008 * 119.94062 * 180.02562 * 6 5 4 33 33 H 1.08000 * 119.97758 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47001 * 299.99726 * 12 9 8 35 35 H 1.09004 * 109.47223 * 59.99412 * 12 9 8 36 36 H 1.09001 * 109.46984 * 299.99803 * 13 12 9 37 37 H 1.08995 * 109.47375 * 59.99776 * 13 12 9 38 38 H 1.09001 * 109.47040 * 299.99827 * 14 13 12 39 39 H 1.09007 * 109.46749 * 59.99803 * 14 13 12 40 40 H 0.97000 * 119.99653 * 175.01567 * 19 18 16 41 41 H 1.09006 * 115.54627 * 328.99311 * 24 15 14 42 42 H 1.08995 * 117.50192 * 359.97438 * 25 24 15 43 43 H 1.09006 * 117.50076 * 145.01705 * 25 24 15 44 44 H 1.09004 * 117.50000 * 214.97510 * 26 24 15 45 45 H 1.09003 * 117.50305 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6048 -0.0014 6 6 3.3019 3.6757 -0.0067 7 6 4.0560 2.5171 -0.0059 8 6 3.4311 1.2848 -0.0002 9 16 4.3929 -0.1915 0.0003 10 8 3.8551 -0.9604 -1.0669 11 8 5.7377 0.2663 -0.0318 12 6 4.0239 -0.9717 1.5958 13 6 4.8085 -2.2796 1.7176 14 6 4.4977 -2.9373 3.0636 15 7 5.2484 -4.1899 3.1799 16 6 4.6960 -5.3627 2.7388 17 1 5.3094 -6.0897 2.2273 18 6 3.3477 -5.6171 2.9490 19 7 2.6904 -4.9562 3.8783 20 14 2.4661 -6.8974 1.9130 21 1 3.4212 -7.4939 0.9450 22 1 1.9257 -7.9621 2.7960 23 1 1.3505 -6.2535 1.1741 24 6 6.5901 -4.1879 3.7682 25 6 7.3532 -5.5138 3.7915 26 6 6.7836 -4.9360 5.0886 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2128 2.3203 0.0099 31 1 1.3340 4.5114 -0.0022 32 1 3.7922 4.6381 -0.0116 33 1 5.1344 2.5752 -0.0104 34 1 4.3107 -0.2990 2.4041 35 1 2.9562 -1.1816 1.6594 36 1 4.5213 -2.9521 0.9092 37 1 5.8762 -2.0701 1.6539 38 1 4.7852 -2.2646 3.8717 39 1 3.4299 -3.1468 3.1277 40 1 1.7335 -5.0810 3.9771 41 1 7.1685 -3.2765 3.6166 42 1 6.8569 -6.3876 3.3695 43 1 8.4340 -5.4749 3.6551 44 1 7.4896 -4.5171 5.8057 45 1 5.9126 -5.4294 5.5200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274360942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:06 Heat of formation + Delta-G solvation = -31.306667 kcal Electronic energy + Delta-G solvation = -27726.888963 eV Core-core repulsion = 23839.081738 eV Total energy + Delta-G solvation = -3887.807225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.45012 -37.76873 -37.11926 -36.66310 -35.60815 -34.41730 -32.53315 -31.69781 -30.45164 -30.07906 -27.58808 -26.04124 -23.98951 -23.37135 -22.47179 -21.43626 -20.97607 -19.68041 -19.16730 -18.34762 -17.12911 -16.64811 -16.45308 -16.09590 -15.66258 -15.53213 -15.20116 -15.02594 -14.66628 -14.58486 -14.25440 -13.95979 -13.57280 -13.11883 -12.87092 -12.65851 -12.49913 -12.07647 -11.97358 -11.76324 -11.75963 -11.67463 -11.60886 -11.43022 -11.10475 -11.03930 -10.89466 -10.71039 -10.61003 -10.38927 -10.16329 -9.90119 -9.66356 -9.56627 -9.54203 -9.22075 -8.65994 -8.49065 -6.55207 -5.80883 -3.46831 0.31548 0.69076 1.08852 2.88296 3.12383 3.26936 3.33983 3.42885 3.47023 4.02692 4.34259 4.43580 4.45876 4.66469 4.77476 4.91223 4.93148 4.94039 5.01641 5.03111 5.28426 5.31221 5.32231 5.34458 5.46571 5.49283 5.78024 5.84365 5.88883 5.95093 6.08135 6.13053 6.16311 6.30569 6.38846 6.41703 6.53943 6.59801 6.69912 6.92223 7.01083 7.08498 7.26375 7.57934 7.79177 8.48013 9.13023 9.73828 10.32185 11.13749 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.003572 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.039364 B = 7837.543824 C = 9041.772134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.219 3.781 4 C -0.230 4.230 5 C -0.033 4.033 6 C -0.181 4.181 7 C 0.012 3.988 8 C -0.690 4.690 9 S 2.489 3.511 10 O -0.931 6.931 11 O -0.950 6.950 12 C -0.580 4.580 13 C -0.131 4.131 14 C 0.160 3.840 15 N -0.551 5.551 16 C -0.260 4.260 17 H 0.066 0.934 18 C 0.016 3.984 19 N -0.883 5.883 20 Si 0.894 3.106 21 H -0.273 1.273 22 H -0.289 1.289 23 H -0.285 1.285 24 C 0.117 3.883 25 C -0.195 4.195 26 C -0.220 4.220 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.151 0.849 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.032 0.968 39 H 0.098 0.902 40 H 0.254 0.746 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.732 17.291 -5.111 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.171 3.829 4 C -0.249 4.249 5 C -0.051 4.051 6 C -0.200 4.200 7 C -0.007 4.007 8 C -0.775 4.775 9 S 2.670 3.330 10 O -0.928 6.928 11 O -0.947 6.947 12 C -0.712 4.712 13 C -0.173 4.173 14 C 0.033 3.967 15 N -0.268 5.268 16 C -0.389 4.389 17 H 0.084 0.916 18 C -0.185 4.185 19 N -0.525 5.525 20 Si 0.722 3.278 21 H -0.198 1.198 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.008 3.992 25 C -0.233 4.233 26 C -0.261 4.261 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.129 0.871 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.169 0.831 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.116 0.884 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.333 16.810 -5.724 18.068 hybrid contribution -1.508 0.027 0.121 1.513 sum -4.841 16.837 -5.603 18.393 Atomic orbital electron populations 1.23239 0.76844 1.05270 1.01581 1.86183 1.22887 1.25926 1.86829 1.18440 0.90656 0.85109 0.88717 1.21339 1.00448 0.92336 1.10805 1.21223 0.94881 0.97120 0.91843 1.21196 0.94022 0.98707 1.06068 1.20921 1.00906 0.89991 0.88891 1.30098 1.03774 1.20035 1.23634 1.05895 0.74339 0.74275 0.78492 1.93564 1.79447 1.69187 1.50565 1.93505 1.33247 1.80589 1.87387 1.30146 1.11861 1.09846 1.19367 1.22139 0.98030 0.91696 1.05412 1.20848 1.00609 0.85350 0.89941 1.43395 1.12539 1.03827 1.67014 1.19122 0.93184 0.96699 1.29931 0.91633 1.25243 0.98968 0.98103 0.96218 1.70074 1.08092 1.44557 1.29766 0.86377 0.79880 0.81321 0.80193 1.19789 1.21588 1.21172 1.21272 0.89124 0.93130 0.95645 1.23018 0.97467 1.00021 1.02811 1.23335 1.02679 1.08192 0.91869 0.92002 0.92107 0.87086 0.84596 0.85135 0.84966 0.83140 0.85408 0.84497 0.90306 0.91905 0.94992 0.88417 0.93609 0.89445 0.88449 0.90753 0.91281 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.14 8.51 -29.51 -0.25 -4.39 16 3 C 0.22 2.86 6.62 -39.21 -0.26 2.60 16 4 C -0.23 -2.32 9.04 -39.43 -0.36 -2.67 16 5 C -0.03 -0.28 10.04 -39.61 -0.40 -0.68 16 6 C -0.18 -1.71 10.04 -39.57 -0.40 -2.11 16 7 C 0.01 0.14 9.50 -39.61 -0.38 -0.24 16 8 C -0.69 -9.62 5.59 -39.43 -0.22 -9.84 16 9 S 2.49 40.49 4.75 -107.50 -0.51 39.98 16 10 O -0.93 -18.23 17.21 -62.80 -1.08 -19.31 16 11 O -0.95 -16.76 16.74 -57.54 -0.96 -17.72 16 12 C -0.58 -9.05 5.93 37.16 0.22 -8.83 16 13 C -0.13 -2.54 5.55 -26.73 -0.15 -2.68 16 14 C 0.16 3.58 5.33 -4.04 -0.02 3.56 16 15 N -0.55 -13.45 2.75 -165.67 -0.46 -13.90 16 16 C -0.26 -6.90 8.47 -15.06 -0.13 -7.02 16 17 H 0.07 1.76 6.75 -52.49 -0.35 1.40 16 18 C 0.02 0.42 4.98 -17.43 -0.09 0.33 16 19 N -0.88 -24.44 11.50 55.49 0.64 -23.80 16 20 Si 0.89 21.18 29.60 -169.99 -5.03 16.15 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.12 2.52 6.56 -67.94 -0.45 2.07 16 25 C -0.19 -3.89 9.80 -26.74 -0.26 -4.15 16 26 C -0.22 -4.51 10.36 -26.74 -0.28 -4.79 16 27 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 28 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 29 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.14 0.99 6.30 -52.49 -0.33 0.66 16 31 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 32 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.15 1.63 7.21 -52.49 -0.38 1.25 16 34 H 0.13 1.64 8.14 -51.92 -0.42 1.21 16 35 H 0.14 2.06 7.41 -51.92 -0.38 1.68 16 36 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 39 H 0.10 2.43 5.59 -51.93 -0.29 2.14 16 40 H 0.25 6.75 8.32 -40.82 -0.34 6.41 16 41 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 42 H 0.10 2.11 6.46 -51.93 -0.34 1.78 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -33.94 382.68 -10.70 -44.65 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.65 Total: 5.83 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: -2.16 Total: -33.25 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.18 Total: -37.70 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -2.30 Total: -41.42 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 16 Polarization: 40.49 SS G_CDS: -0.51 Total: 39.98 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.94 -10.70 -44.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274360942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.340 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds