Wall clock time and date at job start Tue Mar 31 2020 23:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 117.00202 * 2 1 4 4 C 1.38766 * 120.05358 * 0.25365 * 3 2 1 5 5 C 1.38125 * 119.93889 * 180.32246 * 4 3 2 6 6 C 1.38279 * 120.05606 * 359.67778 * 5 4 3 7 7 C 1.38238 * 120.11834 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05191 * 0.02562 * 7 6 5 9 9 S 1.76203 * 120.02631 * 179.97438 * 8 7 6 10 10 O 1.42101 * 104.27402 * 231.06799 * 9 8 7 11 11 O 1.42093 * 104.27938 * 358.92441 * 9 8 7 12 12 C 1.81400 * 104.45014 * 114.99990 * 9 8 7 13 13 C 1.53001 * 109.47179 * 179.97438 * 12 9 8 14 14 C 1.53003 * 109.47196 * 179.97438 * 13 12 9 15 15 N 1.46499 * 109.47036 * 179.97438 * 14 13 12 16 16 C 1.36937 * 120.00000 * 269.99692 * 15 14 13 17 17 H 1.07998 * 119.99907 * 140.53592 * 16 15 14 18 18 C 1.38817 * 120.00110 * 320.54041 * 16 15 14 19 19 N 1.31623 * 119.99795 * 340.27618 * 18 16 15 20 20 Si 1.86798 * 120.00269 * 160.27596 * 18 16 15 21 21 H 1.48500 * 109.46839 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47299 * 119.99684 * 20 18 16 23 23 H 1.48501 * 109.47166 * 240.00130 * 20 18 16 24 24 C 1.46497 * 120.00142 * 90.00284 * 15 14 13 25 25 C 1.52993 * 117.49878 * 183.28785 * 24 15 14 26 26 C 1.52990 * 117.50067 * 114.66187 * 24 15 14 27 27 H 1.09003 * 109.46877 * 299.99810 * 1 2 3 28 28 H 1.08997 * 109.47485 * 59.99818 * 1 2 3 29 29 H 1.09006 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.02478 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.96739 * 179.70152 * 5 4 3 32 32 H 1.08008 * 119.94062 * 180.02562 * 6 5 4 33 33 H 1.08000 * 119.97758 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47001 * 299.99726 * 12 9 8 35 35 H 1.09004 * 109.47223 * 59.99412 * 12 9 8 36 36 H 1.09001 * 109.46984 * 299.99803 * 13 12 9 37 37 H 1.08995 * 109.47375 * 59.99776 * 13 12 9 38 38 H 1.09001 * 109.47040 * 299.99827 * 14 13 12 39 39 H 1.09007 * 109.46749 * 59.99803 * 14 13 12 40 40 H 0.97000 * 119.99653 * 175.01567 * 19 18 16 41 41 H 1.09006 * 115.54627 * 328.99311 * 24 15 14 42 42 H 1.08995 * 117.50192 * 359.97438 * 25 24 15 43 43 H 1.09006 * 117.50076 * 145.01705 * 25 24 15 44 44 H 1.09004 * 117.50000 * 214.97510 * 26 24 15 45 45 H 1.09003 * 117.50305 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6048 -0.0014 6 6 3.3019 3.6757 -0.0067 7 6 4.0560 2.5171 -0.0059 8 6 3.4311 1.2848 -0.0002 9 16 4.3929 -0.1915 0.0003 10 8 3.8551 -0.9604 -1.0669 11 8 5.7377 0.2663 -0.0318 12 6 4.0239 -0.9717 1.5958 13 6 4.8085 -2.2796 1.7176 14 6 4.4977 -2.9373 3.0636 15 7 5.2484 -4.1899 3.1799 16 6 4.6960 -5.3627 2.7388 17 1 5.3094 -6.0897 2.2273 18 6 3.3477 -5.6171 2.9490 19 7 2.6904 -4.9562 3.8783 20 14 2.4661 -6.8974 1.9130 21 1 3.4212 -7.4939 0.9450 22 1 1.9257 -7.9621 2.7960 23 1 1.3505 -6.2535 1.1741 24 6 6.5901 -4.1879 3.7682 25 6 7.3532 -5.5138 3.7915 26 6 6.7836 -4.9360 5.0886 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2128 2.3203 0.0099 31 1 1.3340 4.5114 -0.0022 32 1 3.7922 4.6381 -0.0116 33 1 5.1344 2.5752 -0.0104 34 1 4.3107 -0.2990 2.4041 35 1 2.9562 -1.1816 1.6594 36 1 4.5213 -2.9521 0.9092 37 1 5.8762 -2.0701 1.6539 38 1 4.7852 -2.2646 3.8717 39 1 3.4299 -3.1468 3.1277 40 1 1.7335 -5.0810 3.9771 41 1 7.1685 -3.2765 3.6166 42 1 6.8569 -6.3876 3.3695 43 1 8.4340 -5.4749 3.6551 44 1 7.4896 -4.5171 5.8057 45 1 5.9126 -5.4294 5.5200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274360942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:05 Heat of formation + Delta-G solvation = -52.692771 kcal Electronic energy + Delta-G solvation = -27727.816334 eV Core-core repulsion = 23839.081738 eV Total energy + Delta-G solvation = -3888.734596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.27838 -38.87203 -38.63366 -37.97264 -36.98714 -36.05702 -34.36101 -32.52020 -31.91357 -31.22038 -28.30237 -27.80513 -25.69750 -24.36715 -23.27303 -23.06223 -22.55132 -21.48678 -20.23525 -19.42975 -18.42015 -17.95795 -17.63279 -17.30922 -17.12249 -16.80568 -16.54700 -16.38034 -15.88329 -15.82687 -15.42869 -15.26454 -14.77714 -14.56657 -14.26556 -13.86731 -13.74575 -13.40394 -13.31943 -13.13094 -13.05364 -12.82092 -12.80481 -12.72026 -12.66542 -12.54883 -12.52251 -12.16321 -12.10959 -11.95520 -11.70536 -11.49088 -11.36049 -11.24606 -10.87265 -10.49272 -10.43109 -9.47174 -8.50709 -7.80180 -5.51626 -0.90527 -0.18721 0.29359 1.42003 1.46316 1.55593 1.93999 2.12773 2.41727 2.48153 2.81374 3.14847 3.22249 3.39376 3.45244 3.71304 3.79904 3.93307 3.98595 4.14841 4.29200 4.30585 4.32576 4.33788 4.37551 4.49160 4.52034 4.54033 4.62644 4.69645 4.73510 4.86306 4.94812 4.95986 5.01177 5.08892 5.18123 5.30683 5.34282 5.39390 5.56953 5.66043 5.67448 5.77736 6.13884 6.47222 7.15371 7.82711 8.34914 9.09608 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.003572 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.039364 B = 7837.543824 C = 9041.772134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.339 6.339 3 C 0.198 3.802 4 C -0.230 4.230 5 C -0.022 4.022 6 C -0.176 4.176 7 C -0.007 4.007 8 C -0.706 4.706 9 S 2.500 3.500 10 O -0.975 6.975 11 O -0.971 6.971 12 C -0.575 4.575 13 C -0.126 4.126 14 C 0.161 3.839 15 N -0.571 5.571 16 C -0.265 4.265 17 H 0.056 0.944 18 C -0.028 4.028 19 N -0.910 5.910 20 Si 0.945 3.055 21 H -0.271 1.271 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.095 3.905 25 C -0.183 4.183 26 C -0.213 4.213 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.165 0.835 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.139 0.861 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.253 0.747 41 H 0.114 0.886 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.989 20.196 -5.108 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.252 6.252 3 C 0.150 3.850 4 C -0.249 4.249 5 C -0.040 4.040 6 C -0.195 4.195 7 C -0.025 4.025 8 C -0.796 4.796 9 S 2.686 3.314 10 O -0.972 6.972 11 O -0.968 6.968 12 C -0.707 4.707 13 C -0.168 4.168 14 C 0.033 3.967 15 N -0.289 5.289 16 C -0.396 4.396 17 H 0.074 0.926 18 C -0.226 4.226 19 N -0.553 5.553 20 Si 0.772 3.228 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.210 1.210 24 C -0.012 4.012 25 C -0.221 4.221 26 C -0.254 4.254 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.182 0.818 31 H 0.190 0.810 32 H 0.183 0.817 33 H 0.171 0.829 34 H 0.177 0.823 35 H 0.158 0.842 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.132 0.868 42 H 0.092 0.908 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.549 19.664 -5.721 20.785 hybrid contribution -1.449 -0.725 0.133 1.625 sum -4.998 18.940 -5.588 20.369 Atomic orbital electron populations 1.23533 0.75018 1.06014 1.03532 1.86140 1.25039 1.26878 1.87105 1.18712 0.90605 0.86050 0.89670 1.21740 1.01856 0.91702 1.09646 1.21777 0.94936 0.98112 0.89158 1.21624 0.94557 0.99036 1.04241 1.21142 1.01473 0.90223 0.89711 1.29570 1.04118 1.18850 1.27086 1.04956 0.73997 0.74717 0.77716 1.93505 1.80126 1.71194 1.52353 1.93466 1.34748 1.81021 1.87545 1.30047 1.11492 1.08663 1.20498 1.21904 0.99145 0.92885 1.02818 1.20767 0.98910 0.85211 0.91771 1.43600 1.13676 1.03744 1.67835 1.19233 0.93479 0.97336 1.29539 0.92606 1.25811 0.99598 0.99902 0.97267 1.70164 1.08047 1.46100 1.30983 0.85579 0.78845 0.79432 0.78908 1.19533 1.21567 1.21049 1.21605 0.88332 0.94988 0.96318 1.23024 0.99141 0.98199 1.01778 1.23233 1.02117 1.07730 0.92293 0.89862 0.90259 0.87156 0.81797 0.80955 0.81688 0.82922 0.82347 0.84239 0.92777 0.90904 0.93798 0.91165 0.93807 0.86849 0.90845 0.87119 0.87921 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -9.13 8.51 -82.73 -0.70 -9.84 16 3 C 0.20 4.94 6.62 22.51 0.15 5.09 16 4 C -0.23 -3.90 9.04 22.37 0.20 -3.70 16 5 C -0.02 -0.29 10.04 22.25 0.22 -0.06 16 6 C -0.18 -2.68 10.04 22.28 0.22 -2.46 16 7 C -0.01 -0.15 9.50 22.25 0.21 0.06 16 8 C -0.71 -19.33 5.59 22.37 0.13 -19.21 16 9 S 2.50 83.41 4.75 -56.49 -0.27 83.14 16 10 O -0.97 -40.08 17.21 -122.62 -2.11 -42.19 16 11 O -0.97 -34.76 16.74 -127.65 -2.14 -36.90 16 12 C -0.57 -18.21 5.93 71.98 0.43 -17.79 16 13 C -0.13 -5.01 5.55 30.60 0.17 -4.84 16 14 C 0.16 7.33 5.33 86.38 0.46 7.79 16 15 N -0.57 -28.39 2.75 -678.05 -1.86 -30.25 16 16 C -0.27 -14.54 8.47 84.03 0.71 -13.83 16 17 H 0.06 3.10 6.75 -2.91 -0.02 3.08 16 18 C -0.03 -1.52 4.98 84.86 0.42 -1.10 16 19 N -0.91 -51.94 11.50 21.65 0.25 -51.69 16 20 Si 0.94 44.75 29.60 68.60 2.03 46.78 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 C 0.10 4.04 6.56 44.99 0.30 4.34 16 25 C -0.18 -7.14 9.80 30.59 0.30 -6.84 16 26 C -0.21 -8.58 10.36 30.59 0.32 -8.26 16 27 H 0.08 1.00 7.65 -2.39 -0.02 0.98 16 28 H 0.08 1.00 7.67 -2.39 -0.02 0.98 16 29 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.16 1.74 6.30 -2.91 -0.02 1.72 16 31 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.15 3.17 7.21 -2.91 -0.02 3.15 16 34 H 0.16 3.94 8.14 -2.39 -0.02 3.92 16 35 H 0.14 4.36 7.41 -2.39 -0.02 4.35 16 36 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.04 1.84 8.07 -2.39 -0.02 1.82 16 39 H 0.07 3.63 5.59 -2.38 -0.01 3.61 16 40 H 0.25 13.84 8.32 -92.71 -0.77 13.07 16 41 H 0.11 4.16 8.14 -2.38 -0.02 4.14 16 42 H 0.07 3.22 6.46 -2.39 -0.02 3.20 16 43 H 0.11 3.49 8.14 -2.38 -0.02 3.47 16 44 H 0.10 3.42 8.14 -2.38 -0.02 3.40 16 45 H 0.05 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -76.80 382.68 1.53 -75.27 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.99 Total: 25.15 kcal Atomic # 6 Polarization: -64.82 SS G_CDS: 5.35 Total: -59.47 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.61 Total: -81.94 kcal Atomic # 8 Polarization: -83.97 SS G_CDS: -4.95 Total: -88.92 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 83.41 SS G_CDS: -0.27 Total: 83.14 kcal Total: -76.80 1.53 -75.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274360942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.573 kcal (2) G-P(sol) polarization free energy of solvation -76.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds