Wall clock time and date at job start Tue Mar 31 2020 22:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46496 * 109.47409 * 2 1 4 4 C 1.37100 * 119.99914 * 263.25384 * 3 2 1 5 5 H 1.08007 * 120.00271 * 198.85650 * 4 3 2 6 6 C 1.38946 * 120.00069 * 18.86129 * 4 3 2 7 7 N 1.31419 * 119.99848 * 1.78217 * 6 4 3 8 8 Si 1.86793 * 120.00173 * 181.78382 * 6 4 3 9 9 H 1.48502 * 109.47304 * 89.99920 * 8 6 4 10 10 H 1.48509 * 109.47481 * 209.99676 * 8 6 4 11 11 H 1.48499 * 109.47297 * 330.00114 * 8 6 4 12 12 C 1.34781 * 120.00390 * 83.25358 * 3 2 1 13 13 O 1.21287 * 120.00167 * 183.75129 * 12 3 2 14 14 C 1.50703 * 119.99419 * 3.75140 * 12 3 2 15 15 H 1.08997 * 109.47500 * 331.72303 * 14 12 3 16 16 C 1.52997 * 109.46564 * 211.72284 * 14 12 3 17 17 C 1.52996 * 109.47590 * 62.92420 * 16 14 12 18 18 S 1.81399 * 109.47455 * 184.46271 * 17 16 14 19 19 C 1.81399 * 101.91971 * 179.97438 * 18 17 16 20 20 O 1.42100 * 108.57643 * 294.48650 * 18 17 16 21 21 O 1.42101 * 108.57903 * 65.51222 * 18 17 16 22 22 C 1.50704 * 109.47003 * 91.72811 * 14 12 3 23 23 C 1.38229 * 120.00136 * 59.72218 * 22 14 12 24 24 C 1.38241 * 119.99791 * 179.78913 * 23 22 14 25 25 C 1.38232 * 119.99879 * 0.44037 * 24 23 22 26 26 C 1.38236 * 119.99985 * 359.81234 * 25 24 23 27 27 C 1.38233 * 119.99550 * 239.99707 * 22 14 12 28 28 H 1.09004 * 109.47567 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47257 * 300.00302 * 1 2 3 30 30 H 1.09003 * 109.46851 * 59.99934 * 1 2 3 31 31 H 1.09005 * 109.47568 * 239.99648 * 2 1 3 32 32 H 1.09007 * 109.47096 * 119.99619 * 2 1 3 33 33 H 0.96998 * 119.99956 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47018 * 182.92393 * 16 14 12 35 35 H 1.09001 * 109.47702 * 302.92062 * 16 14 12 36 36 H 1.08999 * 109.46805 * 304.46284 * 17 16 14 37 37 H 1.09001 * 109.46845 * 64.46035 * 17 16 14 38 38 H 1.09009 * 109.47085 * 60.00082 * 19 18 17 39 39 H 1.09001 * 109.47308 * 179.97438 * 19 18 17 40 40 H 1.08997 * 109.47579 * 300.00202 * 19 18 17 41 41 H 1.08008 * 120.00367 * 359.97438 * 23 22 14 42 42 H 1.08003 * 119.99784 * 180.27739 * 24 23 22 43 43 H 1.08002 * 119.99977 * 179.83481 * 25 24 23 44 44 H 1.07999 * 119.99947 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.00362 * 359.97438 * 27 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3783 1.9809 -1.1791 5 1 3.0097 2.8571 -1.1686 6 6 1.9309 1.4616 -2.3877 7 7 1.1341 0.4166 -2.3991 8 14 2.4618 2.2488 -3.9963 9 1 3.7155 1.6094 -4.4703 10 1 1.3961 2.0631 -5.0138 11 1 2.6959 3.6997 -3.7838 12 6 2.1137 2.0623 1.1591 13 8 2.4530 3.2267 1.1521 14 6 1.7989 1.3769 2.4638 15 1 1.0741 0.5815 2.2908 16 6 1.2149 2.3941 3.4462 17 6 -0.1047 2.9369 2.8942 18 16 -0.7305 4.2376 3.9929 19 6 -2.2667 4.7246 3.1600 20 8 -1.0598 3.6525 5.2453 21 8 0.1717 5.3348 3.9554 22 6 3.0614 0.7896 3.0402 23 6 4.1322 1.6111 3.3389 24 6 5.2887 1.0728 3.8717 25 6 5.3776 -0.2881 4.0971 26 6 4.3087 -1.1103 3.7935 27 6 3.1507 -0.5715 3.2647 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 0.8220 0.0538 -3.2428 34 1 1.0355 1.9104 4.4063 35 1 1.9184 3.2160 3.5794 36 1 0.0603 3.3501 1.8991 37 1 -0.8338 2.1287 2.8357 38 1 -2.9324 3.8640 3.0934 39 1 -2.7532 5.5167 3.7292 40 1 -2.0378 5.0853 2.1573 41 1 4.0643 2.6739 3.1590 42 1 6.1237 1.7153 4.1093 43 1 6.2822 -0.7090 4.5109 44 1 4.3783 -2.1736 3.9692 45 1 2.3155 -1.2139 3.0276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279236139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:09 Heat of formation + Delta-G solvation = -69.899530 kcal Electronic energy + Delta-G solvation = -28650.021877 eV Core-core repulsion = 24760.541141 eV Total energy + Delta-G solvation = -3889.480737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.81526 -38.13181 -36.84634 -35.92291 -35.46539 -34.27660 -31.83293 -31.06298 -30.60611 -29.61526 -29.48520 -27.10317 -24.89889 -22.77982 -22.40915 -21.96984 -21.20394 -18.76405 -18.53648 -17.04398 -16.95582 -16.47877 -16.21575 -15.90964 -15.85928 -14.94397 -14.83710 -14.32522 -14.12365 -13.95698 -13.76920 -13.35928 -13.21742 -13.17782 -13.04537 -12.83527 -12.58924 -12.15846 -12.10024 -11.96030 -11.87509 -11.80308 -11.61636 -11.37676 -11.12956 -10.98432 -10.95902 -10.85457 -10.82395 -10.46787 -10.36555 -10.24425 -10.07650 -10.01110 -8.94787 -8.77439 -8.63070 -8.13554 -7.72490 -6.28662 -3.92742 0.07628 1.60256 1.68365 2.83066 3.11318 3.20966 3.26666 3.68679 3.77588 4.03108 4.10143 4.11621 4.69927 4.71414 4.76480 4.84793 5.06498 5.12133 5.14622 5.20493 5.27439 5.38732 5.44489 5.58087 5.59505 5.75690 5.83439 5.86311 5.93082 6.11031 6.16237 6.27633 6.29692 6.36064 6.50731 6.61880 6.70160 6.72551 6.77832 6.94955 7.27101 7.31616 7.48312 7.65533 8.07476 8.48102 9.12908 9.39067 9.93085 10.63969 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007899 B = 0.005324 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3543.800895 B = 5258.197798 C = 7521.278334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.115 3.885 3 N -0.438 5.438 4 C -0.293 4.293 5 H 0.099 0.901 6 C 0.025 3.975 7 N -0.881 5.881 8 Si 0.928 3.072 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.455 3.545 13 O -0.585 6.585 14 C -0.060 4.060 15 H 0.095 0.905 16 C -0.083 4.083 17 C -0.604 4.604 18 S 2.419 3.581 19 C -0.659 4.659 20 O -0.948 6.948 21 O -0.936 6.936 22 C -0.064 4.064 23 C -0.102 4.102 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.113 4.113 28 H 0.037 0.963 29 H 0.019 0.981 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.028 0.972 33 H 0.265 0.735 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.144 0.856 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 -2.413 9.629 10.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.008 4.008 3 N -0.156 5.156 4 C -0.421 4.421 5 H 0.117 0.883 6 C -0.176 4.176 7 N -0.523 5.523 8 Si 0.755 3.245 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.242 3.758 13 O -0.470 6.470 14 C -0.083 4.083 15 H 0.113 0.887 16 C -0.122 4.122 17 C -0.734 4.734 18 S 2.602 3.398 19 C -0.808 4.808 20 O -0.946 6.946 21 O -0.933 6.933 22 C -0.065 4.065 23 C -0.120 4.120 24 C -0.139 4.139 25 C -0.146 4.146 26 C -0.142 4.142 27 C -0.131 4.131 28 H 0.056 0.944 29 H 0.038 0.962 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.162 0.838 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.858 -1.604 10.212 10.725 hybrid contribution -0.332 -0.252 -1.787 1.835 sum -3.190 -1.856 8.425 9.198 Atomic orbital electron populations 1.22173 0.97086 0.99757 1.01327 1.21610 0.94124 0.83868 1.01190 1.43750 1.55249 1.11225 1.05382 1.19762 1.27877 1.12148 0.82308 0.88294 1.25298 0.95988 0.96730 0.99582 1.69999 1.33083 1.22723 1.26489 0.85892 0.78058 0.79690 0.80893 1.20471 1.20916 1.19480 1.19695 0.84721 0.86870 0.84505 1.90529 1.53147 1.16590 1.86700 1.20301 0.95112 0.98309 0.94529 0.88690 1.21110 0.93440 0.99835 0.97812 1.30295 1.08256 1.17531 1.17339 1.07830 0.77507 0.77345 0.77146 1.30283 1.22681 1.12402 1.15404 1.93566 1.84341 1.78531 1.38114 1.93607 1.61430 1.51304 1.86945 1.19595 0.95199 0.93515 0.98159 1.21223 0.92678 1.00807 0.97332 1.21117 0.97792 0.95231 0.99808 1.21077 0.98519 0.93883 1.01101 1.21037 0.93647 0.99422 1.00051 1.21057 0.98250 0.94306 0.99486 0.94386 0.96207 0.89319 0.86622 0.95428 0.92414 0.90240 0.89126 0.83801 0.85267 0.85470 0.85623 0.85114 0.85204 0.86313 0.86564 0.86360 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.38 37.15 0.35 -2.46 16 2 C 0.12 2.46 4.91 -4.05 -0.02 2.44 16 3 N -0.44 -10.52 2.64 -114.81 -0.30 -10.83 16 4 C -0.29 -7.74 9.38 -14.93 -0.14 -7.88 16 5 H 0.10 2.77 7.35 -52.48 -0.39 2.39 16 6 C 0.02 0.62 5.31 -17.47 -0.09 0.53 16 7 N -0.88 -21.43 7.87 55.50 0.44 -21.00 16 8 Si 0.93 20.06 29.55 -169.99 -5.02 15.04 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 12 C 0.45 10.28 5.23 -10.98 -0.06 10.22 16 13 O -0.58 -14.98 14.99 5.55 0.08 -14.90 16 14 C -0.06 -1.07 1.61 -92.92 -0.15 -1.21 16 15 H 0.09 1.56 4.94 -51.93 -0.26 1.31 16 16 C -0.08 -1.33 4.19 -26.73 -0.11 -1.44 16 17 C -0.60 -8.30 5.65 37.16 0.21 -8.09 16 18 S 2.42 30.58 5.36 -107.50 -0.58 30.00 16 19 C -0.66 -5.77 10.62 101.05 1.07 -4.70 16 20 O -0.95 -14.16 18.10 -57.83 -1.05 -15.21 16 21 O -0.94 -15.84 18.10 -57.83 -1.05 -16.88 16 22 C -0.06 -1.09 4.64 -104.63 -0.49 -1.58 16 23 C -0.10 -1.75 8.84 -39.58 -0.35 -2.10 16 24 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 25 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 26 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 27 C -0.11 -1.68 8.93 -39.58 -0.35 -2.04 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.02 0.34 7.01 -51.93 -0.36 -0.03 16 30 H 0.09 1.97 6.33 -51.93 -0.33 1.64 16 31 H 0.12 2.73 5.79 -51.93 -0.30 2.43 16 32 H 0.03 0.52 5.59 -51.93 -0.29 0.23 16 33 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.57 7.12 -51.93 -0.37 1.20 16 36 H 0.14 2.25 6.83 -51.92 -0.35 1.89 16 37 H 0.13 1.36 8.14 -51.92 -0.42 0.93 16 38 H 0.13 0.85 8.14 -51.92 -0.42 0.42 16 39 H 0.13 0.94 8.14 -51.92 -0.42 0.52 16 40 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.13 2.37 7.26 -52.48 -0.38 1.99 16 42 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.12 1.59 7.69 -52.49 -0.40 1.19 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -33.83 374.00 -9.54 -43.36 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.37 Total: 9.38 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -1.32 Total: -24.61 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.13 Total: -31.82 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -2.01 Total: -46.98 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 30.58 SS G_CDS: -0.58 Total: 30.00 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.83 -9.54 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279236139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.538 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds